Contrasting genetic structure of two Pacific Hymeniacidon species

Hydrobiologia

Volumn 603, Issue 1, 2008, Pages 313-326

  Hoshino, Sayumi ^a   Saito, Daichi S ^a   Fujita, Toshihiko ^a  

^a DEPARTMENT OF BOTANY   (Japan)

Author keywords

Dispersal; Distribution; Hymeniacidon flavia; Hymeniacidon sinapium; Phylogeography; Porifera

Indexed keywords

BIOMARKERS; DNA; ENZYMES; GENETIC ENGINEERING;

CONTRASTING GENETIC STRUCTURE; GEOGRAPHIC DISTRIBUTION; HYMENIACIDON SINAPIUM; PHYLOGEOGRAPHY;

BIODIVERSITY;

DISPERSAL; GENETIC DIFFERENTIATION; GENETIC MARKER; GENETIC STRUCTURE; GEOGRAPHICAL DISTRIBUTION; MITOCHONDRIAL DNA; NUCLEIC ACID ANALYSIS; PHYLOGEOGRAPHY; SPONGE;

ASIA; EURASIA; FAR EAST; JAPAN; KOREA; KYUSHU; SHIKOKU;

HALICHONDRIIDAE; HYMENIACIDON; HYMENIACIDON SINAPIUM; PORIFERA;

EID: 41049096161     PISSN: 00188158     EISSN: 15735117     Source Type: Journal    
DOI: 10.1007/s10750-008-9295-2     Document Type: Article

References (57)

1. Avise, J. C., 2000. Phylogeography, the History and Formation of Species. Harvard University Press, Cambridge.
2. Boury-Esnault, N., A. M. Sole-Cava & J. P. Thorpe, 1992. Genetic and cytological divergence between color morphs of the Mediterranean sponge Oscarella lobularis Schmidt (Porifera, Demospongiae, Oscarellidae). Journal of Natural History 26: 271-284.
3. Chombard, C., N. Boury-Esnault & S. Tillier, 1998. Reassessment of homology of morphological characters in tetractinellid sponges based on molecular data. Systematic Biology 47: 351-366.
4. Clement, M., D. Posada & K. A. Crandall, 2000. TCS, a computer program to estimate gene genealogies. Molecular Ecology 9: 1657-1660.
5. Collins, B., 2003. The TIMES Comprehensive Atlas of the World, 11th edn. Harper Collins, London.
6. Crandall, K. A. & A. R. Templeton, 1993. Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics 134: 959-969.
7. Duran, S., M. Pascual, A. Estoup & X. Turon, 2002. Polymorphic microsatellite loci in the sponge Crambe crambe (Porifera: Poecilosclerida) and their variation in two distant populations. Molecular Ecology Notes 2: 478-480.
8. Duran, S., G. Giribet & X. Turon, 2004a. Phylogeographical history of the sponge Crambe crambe (Porifera, Poecilosclerida), range expansion and recent invasion of the Macronesian islands from the Mediterranean Sea. Molecular Ecology 13: 109-122.
9. Duran, S., M. Pascual, A. Estoup & X. Turon, 2004b. Strong population structure in the marine sponge Crambe crambe (Poecilosclerida) as revealed by microsatellite markers. Molecular Ecology 13: 511-522.
10. Duran, S., M. Pascual & X. Turon, 2004c. Low levels of genetic variation in mtDNA sequences over the western Mediterranean and Atlantic range of the sponge Crambe crambe (Poecilosclerida). Marine Biology 144: 31-35.
11. Evans, C. W., 1977. The ultrastructure of larvae from the marine sponge Halichondria moorei Bergquist (Porifera, Demospongiae). Cahiers de Biologie Marine 18: 427-433.
12. Excoffier, L. G. L. & S. Schneider, 2005. Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1: 47-50.
13. Hooper, J. N. A. & R. W. M. van Soest, 2002. Systema Porifera: a guide to the classification of sponges. Plenum Publishers, New York.
14. Horikoshi, M., Y. Nagata & T. Satou, 1987. Nature in Japan 7. Iwanami, Tokyo, Japan. 299 pp.
15. Hoshino, S., Y. Watanabe & M. Takeda, 2003. Systematic status of Halichondria japonica (Kadota) (Demospongiae, Halichondria) from Japan. Bollettino dei Musei e degli Istituti Biologici del l'Universita di Genova 68: 373-379.
16. Jarman, S. N., R. D. War & N. G. Elliott, 2002. Oligonucleotide primers for PCR amplification of coelomate introns. Marine Biotechnology 4: 347-355.
17. Jones, G. P., M. J. Milicich, M. J. Emslie & C. Lunow, 1999. Self-recruitment in a coral reef fish population. Nature 402: 802-804.
18. Klautau, M., C. A. M. Russo, C. Lazoski, N. Boury-Esnault, J. P. Thorpe & A. M. Sole-Cava, 1999. Does cosmopolitanism result from overconservative systematics? A case study using the marine sponge Chondrilla nucula. Evolution 53: 1414-1422.
19. Kojima, S., R. Segawa & I. Hayashi, 1997. Genetic differentiation among populations of the Japanese turban shell Turbo (Batillus) cornutus corresponding to warm currents. Marine Ecology Progress Series 150: 149-155.
20. Kojima, S., R. Sagawa & I. Hayashi, 2000. Stability of the courses of the warm coastal currents along the Kyushu Islands suggested by the population structure of the Japanese Turban shell, Turbo (Batillus) cornutus. Journal of Oceanography 56: 601-604.
21. Kojima, S., I. Hayashi, D. Kim, A. Iijima & T. Furota, 2004. Phylogeography of an intertidal direct-developing gastropod, Batillaria cumingi, around the Japanese islands. Marine Ecology Progress Series 276: 161-172.
22. Lavrov, D. V. & B. F. Lang, 2005. Transfer RNA gene recruitment in mitochondrial DNA. Trends in Genetics 21: 129-133.
23. Lavrov, D. V., L. Forget, M. Kelly & B. F. Lang, 2005. Mitochondrial genomes of two demosponges provide insights into an early stage of animal evolution. Molecular Biology and Evolution 22: 1231-1239.
24. Lento, G. M., C. S. Baker, V. David, N. Yuhki, N. J. Gales & S. J. O'Brien, 2003. Automated single-strand conformation polymorphism reveals low diversity of a major histocompatibility complex class II gene in threatened New Zealand sea lion. Molecular Ecology Notes 3: 346-349.
25. Liao, D., 1999. Concerted evolution: molecular mechanism and biological implications. American Journal of Human Genetics 64: 24-30.
26. Lobo-Hajdu, G., C. A. R. Guimaraes, A. Salgado, F. R. M. Lamaro, T. Vieiralves, J. J. Mansure & R. M. Albano, 2003. Intragenomic, intra- and interspecific variation in the rDNA ITS of Porifera revealed by PCR-single strand conformation polymorphism (PCR-SSCP). Bollettino dei Musei e degli Istituti Biologici dell'universita di Genova 68: 413-423.
27. Maldonado, M., 2006. The ecology of the sponge larva. Canadian Journal of Zoology 84: 175-194.
28. Maldonado, M. & C. M. Young, 1996. Effects of physical factors on larval behavior, settlement and recruitment of four tropical demosponges. Marine Ecology Progress Series 138: 169-180.
29. Milligan, B., 1998. Total DNA isolation. In Hoelzel, A. R. (ed.), Molecular Genetic Analysis of Populations, a Practical Approach, 2nd edn. IRL Press, Oxford, 29-64.
30. Muricy, G., A. Sole-Cava, J. P. Thorpe & N. Boury-Esnault, 1996. Genetic evidence for extensive cryptic speciation in the subtidal sponge Plakina trilopha (Porifera, Demospongiae, Homoscleromorpha) from the western Mediterranean. Marine Ecology Progress Series 138: 181-187.
31. Nei, M., 1987. Molecular Evolutionary Genetics. Columbia University Press, New York.
32. Nei, M. & A. P. Rooney, 2005. Concerted and birth-and-death evolution of multigene families. Annual Review of Genetics 39: 121-152.
33. Ohshima, K., 1990. The history of straits around the Japanese islands in the late-quaternary. The Quaternary Research 29: 193-208.
34. Park, M. H., C. J. Sim, J. Baek & G. S. Min, 2007. Identification of genes suitable for DNA barcoding of morphologically indistinguishable Korean Halichondriidae sponges. Molecules and Cells 23: 220-227.
35. Posada, D., K. A. Crandall & A. R. Templeton, 2000. GeoDis, a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Molecular Ecology 9: 487-488.
36. Shanks, A. L., B. A. Grantham & M. H. Carr, 2003. Propagule dispersal distance and the size and spacing of marine reserves. Ecological Applications 13: S159-S169.
37. Shearer, T. L., M. J. van Oppen, S. L. Romano & G. Wörheide, 2002. Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria). Molecular Ecology 11: 2475-2487.
38. Sim, C. J., 1985. A systematic study on the marine sponges from the South Sea and the Yellow Sea of Korea. Korean Journal of Systematic Zoology 1: 21-30.
39. Sim, C. J. & G. J. Bakus, 1986. Marine sponges of Santa Catalina Island, California. Allan Hancock Foundation Publications. Occasional Papers 5: 1-23.
40. Sim, C. J. & K. J. Le, 2003. A new species of the genus Hymeniacidon (Demospongiae, Halichondrida, Halichondriidae) from Korea. Korean Journal of Biological Sciences 7: 187-190.
41. Sole-Cava, A. M. & J. P. Thorpe, 1986. Genetic differentiation between morphotypes of the marine sponge Suberites ficus (Demospongiae, Hadromerida). Marine Biology 93: 247-253.
42. Sole-Cava, A. M., M. Klautau, N. Boury-Esnault, R. Borojecic & J. P. Thorpe, 1991. Genetic evidence for cryptic speciation in an allopatric population of two cosmopolitan species of the calcareous sponge genus Clathrina. Marine Biology 111: 381-386.
43. Swearer, S. E., J. E Caselle, D. W. Lea & R. R. Warner, 1999. Larval retention and recruitment in an island population of a coral-reef fish. Nature 402: 799-802.
44. Tajima, F., 1983. Evolutionary relationship of DNA sequences in finite populations. Genetics 105: 437-460.
45. Templeton, A. R, 1998 Nested clade analysis of phylogeographical data, testing hypotheses about gene flow and population history. Molecular Ecology 7: 381-397.
46. Templeton, A. R. & C. F. Sing, 1993. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination. Genetics 134: 659-669.
47. Templeton, A. R., E. Boerwinkle & C. F. Sing, 1987. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila. Genetics 117: 343-351.
48. Templeton, A. R., K. A. Crandall & C. F. Sing, 1992. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132: 619-633.
49. Templeton, A. R., E. Routman & C. A. Phillips, 1995. Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics 140: 767-782.
50. Thorrold, S. R., C. Latkoczy, P. K. Swart & C. M. Jones, 2001. Natal homing in a marine fish metapopulation. Science 291: 297-299.
51. Uriz, M. J., M. Maldonado, X. Turon & R. Marti, 1998. How do reproductive output, larval behavior, and recruitment contribute to adult spatial patterns in Mediterranean encrusting sponges? Marine Ecology Progress Series 167: 137-148.
52. van Oppen, M. J. H., G. Wörheide & M. Takabayashi, 2002. Nuclear markers in evolutionary and population genetic studies of scleractinian corals and sponges. In Moosa, K. (ed.), Proceedings of the 9th International Coral Reef Symposium, Bali, October 2000, Vol. 1, 131-138.
53. Woollacott, R. M., 1990. Structure and swimming behavior of the larva of Halichondria melanadocia (Porifera, Demospongiae). Journal of Morphology 205: 135-145.
54. Wörheide, G., 2006. Low variation in partial cytochrome oxidase subunit I (COI) mitochondrial sequences in the coralline demosponge Astrosclera willeyana across the Indo-Pacific. Marine Biology 148: 907-912.
55. Wörheide, G., J. N. A. Hooper & B. M. Degnan, 2002. Phylogeography of western Pacific Leucetta 'chagosensis' (Porifera, Calcarea) from ribosomal DNA sequences: implications for population history and conservation of the Great Barrier Reef World Heritage Area (Australia). Molecular Ecology 11: 1753-1768.
56. Wörheide, G., S. A. Nichols & J. Goldberg, 2004. Intragenomic variation of the rDNA internal transcribed spacers in sponges (phylum Porifera): implications for phylogenetic studies. Molecular Phylogenetics and Evolution 33: 816-830.
57. Zhang, D. X. & G. M. Hewitt, 2003. Nuclear DNA analyses in genetic studies of populations: practice, problems and prospects. Molecular Ecology 12: 563-584.