Proteome profiling of embryo chick retina

Proteome Science

Volumn 6, Issue , 2008, Pages

  Mizukami, Mina ^a   Kanamoto, Takashi ^a   Souchelnytskyi, Nazariy ^b   Kiuchi, Yoshiaki ^a  

^a HIROSHIMA UNIVERSITY   (Japan)

^b KAROLINSKA UNIVERSITY HOSPITAL   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

4 AMINOBUTYRIC ACID A RECEPTOR; ALPHA ENOLASE; CASPASE 8; CELL PROTEIN; CYTOKERATIN 9; FATTY ACID BINDING PROTEIN; PROTEIN SIN3B; PROTEIN SMT3A; UNCLASSIFIED DRUG; WNT PROTEIN; WNT9 PROTEIN; ZINC FINGER PROTEIN;

ANIMAL TISSUE; ARTICLE; CELL DEATH; CELL METABOLISM; CELL PROLIFERATION; CELL STRUCTURE; CELL TRANSPORT; CHICK EMBRYO; CONTROLLED STUDY; EMBRYO; EXTRACELLULAR MATRIX; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN SYNTHESIS REGULATION; PROTEOMICS; RETINA DEVELOPMENT; SIGNAL TRANSDUCTION; TWO DIMENSIONAL GEL ELECTROPHORESIS;

EID: 41049088532     PISSN: None     EISSN: 14775956     Source Type: Journal    
DOI: 10.1186/1477-5956-6-3     Document Type: Article

References (46)

1. Adler R A model of retinal cell differentiation in the chick Prog Ret Eye Res 2000, 19:529-557. 10.1016/S1350-9462(00)00008-2
2. Austin CP Feldman DE Ida JA Jr Cepko CL Vertebrate retinal ganglion cells are selected from competent progenitors by the action of Notch Development 1995, 121:3637-3650. 8582277
3. Sadzinski LM Matter JM Ong MT Hernandez J Ballivet M Specification of neurotransmitter receptor identity in developing retina: The chick ATH5 promoter integrates the positive and negative effects of several bHLH proteins Development 2001, 128:217-231. 11124117
4. Liu W Khare SL Liang X Peters MA Liu X Cepko CL Xiang M All Brn3 genes can promote retinal ganglion cell differentiation in the chick Development 2000, 127:3237-3247. 10887080
5. Oblander SA Ensslen-Craig SE Longo FM Brady-Kalnay SM E-cadherin promotes retinal ganglion cell neurite outgrowth in a protein tyrosine phosphatase-mu-dependent manner Mol Cell Neurosci 2007, 34:481-492. 10.1016/j.mcn.2006.12.002 17276081 1853338
6. Walkenhorst J Dutting D Handwerker C Huai J Tanaka H Drescher U The EphA4 receptor tyrosine kinase is necessary for the guidance of nasal retinal ganglion cell axons in vitro Mol Cell Neurosci 2000, 16:365-375. 10.1006/mcne.2000.0878 11085874
7. Philipsborn CV Lang S Loeschinger J Bernard A David C Lehnert D Bonhoeffer F Bastmeyer M Growth cone navigation in substrate-bound ephrin gradients Development 2006, 133:2487-2495. 10.1242/dev.02412 16763203
8. Sakagami K Ishii A Shimada N Yasuda K RaxL regulates chick ganglion cell development Mech Dev 2003, 12:881-895. 10.1016/S0925-4773(03)00163-1
9. Turner BA Sparrow J Cai B Monroe J Mikawa T Hempstead BL TrkB/BDNF signaling regulates photoreceptor progenitor cell fate decisions Dev Biol 2006, 299:455-465. 10.1016/j.ydbio.2006.08.025 17005175
10. Moreira EF Adler R Effects of follistatin overexpression on cell differentistion in the chick embryo retina Dev Biol 2006, 298:272-284. 10.1016/j.ydbio.2006.06.035 16872597
11. Godbout R Marusyk H Bisgrove D Dabbagh L Poppema S Localization of a fatty acid binding and its transcript in the developing chick retina Exp Eye Res 1995, 60:645-657. 10.1016/S0014-4835(05)80006-5 7641847
12. Bisgrove DA Godbout R Differential expression of AP-2α and AP-2β in the developing chick retina: Repression of R-FABP promoter activity by AP-2 Dev Dynamics 1999, 214:195-206. 10.1002/ (SICI)1097-0177(199903)214:3<195::AID-AJA3<3.0.CO;2-8
13. Bisgrove DA Monckton EA Godbout R Involvement of AP-2 in regulation of the R-FABP gene in the developing chick retina Mol Cell Biol 1997, 17:5935-5945. 232441 9315651
14. Godbout R Identification and characterization of transcripts present at elevated levels in the undifferentiated chick retina Exp Eye Res 1993, 56:95-106. 10.1006/exer.1993.1014 7916696
15. Fuhrman S Levine EM Reh TA Extraocular mesenchyme patterns the optic vesicle during early eye development in the embryonic chick Development 2000, 127:4599-4609. 11023863
16. Rodriguez J Esteve P Weinl C Ruiz JM Fermin Y Trousse F Dwivedy A Holt C Bovolenta P SFRP1 regulates the growth of retinal ganglion cell axons through Fz2 receptor Nat Neurosci 2005, 8:1301-1309. 10.1038/nn1547 16172602
17. Qian JQ Jiang Z Li M Heaphy P Liu YH Shackleford GM Mouse Wnt9b transforming activity, tissue-specific expression, and evolution GENOMICS 2003, 8:34-46. 10.1016/S0888-7543(02)00012-5
18. Bergstein I Eisenbreg LM Bhalerao J Jenkins NA Copeland NG Osborne MP Bowcock AM Brown AMC Isolation of two novel WNT Genes, WNT14 and WNT15, one of which (WNT15) is closely linked to WNT3 on human chromosome 17q21 GENOMICS 1997, 46:450-458. 10.1006/geno.1997.5041 9441749
19. Osakabe F Ooto S Akagi T Mandai M Akaike A Takahashi M Wnt signaling promotes regeneration in the retina of adult mammals J Neurosci 2007, 27:4210-4219. 10.1523/JNEUROSCI.4193-06.2007 17428999
20. Cho SH Cepko CL Wnt2b/β-catenin-mediated canonical Wnt signaling determines the peripheral Fates of the chick eye Development 2006, 133:3167-3177. 10.1242/dev.02474 16854977
21. Nishida T Kaneko F Kitagawa M Yasuda H Characterization of a novel mammalian SUMO-1/Smt3-specific is opeptidase, a homologue of rat AXAM, which is an axin-binding protein promoting β-catenin degradation J Biol Chem 2001, 276:39060-39066. 10.1074/jbc.M103955200 11489887
22. Yamaguchi M Tonou-Fujimori N Komori A Maeda R Nojima Y Li H Okamoto H Masai I Histone deacetylase 1 regulates retinal neurogenesis in zebrafish by suppressing Wnt and Notch signaling pathways Development 2005, 132:3027-3043. 10.1242/dev.01881 15944187
23. Romm E Nielsen JA Kim JG Hudson LD Myt1 family recruits histone deacetylase to regulate neural transcription J Neurochem 2005, 93:1444-1453. 1201409 15935060 10.1111/j.1471-4159.2005.03131.x
24. Jehuda P Sepkuty JP Cohen AS Eccles C Rafiq A Behar K Ganel R Coulter DA Rothstein JD A neuronal glutamate transporter contributes to neurotransmitter GABA synthesis and epilepsy J Neurosci 2002, 22:6372-6379. 12151515
25. Catsicas M Mobbs P GABA-B receptors regulate chick retinal calcium waves J Neurosci 2001, 21:897-910. 11157076
26. Catsicas M Allcorn S Mobbs P Early activation of Ca(2+)-permeable AMPA receptors reduces neurite outgrowth in embryonic chick retinal neurons J Neurobiol 2001, 49:200-211. 10.1002/neu.1075 11745658
27. Catsicas M Bonness V Becker D Mobbs P Spontaneous Ca2+ transients and their transmission in the developing chick retina Cur Biol 1998, 8:283-286. 10.1016/S0960-9822(98)70110-1
28. Wong WT Sanes JR Wong ROL Developmentally regulated spontaneous activity in the embryonic chick retina J Neurosci 1998, 18:8839-8852. 9786990
29. Hering H Kroger S Formation of synaptic specializations in the inner plexiform layer of the developing chick retina J Comp Neurol 1996, 375:3934-05. 10.1002/ (SICI)1096-9861(19961118)375:3<393::AID-CNE4<3.0.CO;2-Y 8915838
30. Hu M Bruun A Ehinger B The expression of GABA(A) receptors during the development of the rabbit retina Acta Ophthalmol Scand 1998, 76:515-520. 10.1034/j.1600-0420.1998.760501.x 9826031
31. Mitchell CK Redburn DA GABA and GABA-A receptors are maximally expressed in association with cone synaptogenesis in neonatal rabbit retina Dev Brain Res 1996, 95:63-71. 10.1016/0165-3806(96)00064-8 synaptogenesis in neonatal rabbit retina
32. Karne A Oakley DM Wong GK Wong RO Immunocytochemical localization of GABA, GABAA receptors, and synapse-associated proteins in the developing and adult ferret retina Vis Neurosci 1997, 14:1097-1108. 9447691
33. Croci C Brandstatter JH Enz R ZIP3, a new splice variant of the PKC-ζ-interacting protein family, binds to GABAc receptors, PKC-ζ, and Kvβ2 J Biol Chem 2003, 278:6128-6135. 10.1074/ jbc.M205162200 12431995
34. Kang X Chong J Ni M HYPERSENSITIVE TO RED AND BLUE 1, a ZZ-Type zinc finger protein, regulates phytochrome B-mediated red and cryptochrome-mediated blue light responses Plant Cell 2005, 17:822-835. 1069701 15705950 10.1105/tpc.104.029165
35. Weishaupt JH Diem R Kermer P Krajewski S Reed JC Bahr M Contribution of caspase-8 to apoptosis of axotomized rat retinal ganglion cells in vivo Neurobiol Dis 2003, 13:124-135. 10.1016/S0969-9961(03)00032-9 12828936
36. Neekhra A Luthra S Chwa M Seigel G Gramajo AL Kuppermann BD Kenney MC Caspase-8, -12, and -3 activation by 7-ketocholesterol in retinal neurosensory cells Invest Ophthalmol Vis Sci 2007, 48:1362-1367. 10.1167/ iovs.06-0900 17325185
37. Kim HS Park CK Retinal ganglion cell death is delayed by activation of retinal intrinsic cell survival program Brain Res 2005, 1057:17-28. 10.1016/j.brainres.2005.07.005 16139821
38. Zwaan J Wang L Garza A Lam KW Neuron-specific enolase expression during eye development in the chicken embryo Exp Eye Res 1994, 58:91-97. 10.1006/exer.1994.1198 8157105
39. Lokhov PG Moshkovskii SA Ipatova OM Prozorovskii VN Cytosolic insulin-binding proteins of mouse liver cells Protein Pept Lett 2004, 11:29-33. 10.2174/0929866043478356 14965276
40. Kozielski F Sack S Marx A Thormahlen M Schonbrunn E Biou V Thompson A Mandelkow EM Mandelkow E The crystal structure of dimeric kinesin and implications for microtuble-dependent motility Cell 1997, 91:985-994. 10.1016/S0092-8674(00)80489-4 9428521
41. Bost-Usinger L Chen RJ Hillman D Park H Burnside B Multiple kinesin family members expressed in teleost retina and RPE include a novel C-terminal kinesin Exp Eye Res 1997, 64:781-794. 10.1006/exer.1996.0271 9245909
42. Whitehead JL Wang SY Bost-Usinger L Hoang E Frazer KA Burnside B Photoreceptor localization of the KIF3A and KIF3B subunits of the heterotrimeric microtubule motor kinesin ll in vertebrate retina Exp Eye Res 1999, 69:4915-03. 10.1006/exer.1999.0724 10548469
43. Whited JL Cassell A Brouillette M Garrity PA Dynactin is required to maintain nuclear position within postmitotic Drosophila photoreceptor neurons Development 2004, 131(19):4677-4686. 10.1242/dev.01366 15329347
44. Pramatarova A Ochalski PG Lee CH Howell BW Mouse Disabled 1 regulates the nuclear position of neurons in a Drosophila eye model Mol Cell Biol 2006, 26:1510-1517. 1367204 16449660 10.1128/MCB.26.4.1510-1517.2006
45. Louis S Ramagli Quantifying protein in 2-D page solubilization buffers Methods in Molecular Biology Humana Press Inc., Totowa, NJ Link AJ 1999 112 http://humanapress.com/index.php?option=com_searchresult&task= favorites&search=Methods%20in%20Molecular%20Biology&category= books
46. Kanamoto T Hellman U Heldin CH Souchelnytskyi S Functional proteomics of transforming growth factor-beta-1stimulated Mv1Lu epithelial cells: Rad51 as a target of TGF beta1-dependent regulation of DNA repair EMBO J 2002, 21(5):1219-1230. 125881 11867550 10.1093/emboj/21.5.1219