Microarray analysis of Streptococcus pneumoniae gene expression changes to human lung epithelial cells

Canadian Journal of Microbiology

Volumn 54, Issue 3, 2008, Pages 189-200

  Song, Xin Ming ^a   Connor, Wayne ^a   Jalal, Shakiba ^a   Hokamp, Karsten ^b   Potter, Andrew A ^a  

^a UNIVERSITY OF SASKATCHEWAN   (Canada)

^b TRINITY COLLEGE DUBLIN   (Ireland)

Author keywords

Adherence; Epithelial cells; Microarray; Streptococcus pneumoniae

Indexed keywords

BIOLOGICAL ORGANS; CELL CULTURE; MICROARRAYS; OLIGONUCLEOTIDES; PATHOGENS; PULMONARY DISEASES;

HUMAN LUNG EPITHELIAL CELLS; STREPTOCOCCUS PNEUMONIAE;

GENE EXPRESSION;

BACTERIUM; GENE EXPRESSION; POLYMERASE CHAIN REACTION; QUANTITATIVE ANALYSIS; VIRULENCE;

ARTICLE; BACTERIUM ISOLATION; CONTROLLED STUDY; GENE EXPRESSION; GENE LOCUS; GENETIC ASSOCIATION; HUMAN; HUMAN CELL; LUNG ALVEOLUS EPITHELIUM; MICROARRAY ANALYSIS; MUTAGENESIS; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; STREPTOCOCCUS PNEUMONIAE; UNINDEXED SEQUENCE;

BACTERIAL ADHESION; BACTERIAL PROTEINS; CELL LINE; EPITHELIAL CELLS; GENE DELETION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; RESPIRATORY MUCOSA; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, BACTERIAL; RNA, MESSENGER; STREPTOCOCCUS PNEUMONIAE;

STREPTOCOCCUS PNEUMONIAE;

EID: 40849133913     PISSN: 00084166     EISSN: None     Source Type: Journal    
DOI: 10.1139/W07-133     Document Type: Article

References (36)

1. Bergmann, S., and Hammerschmidt, S. 2006. Versatility of pneumococcal surface proteins. Microbiology, 152: 295-303. doi:10.1099/mic.0.28610-0.
2. Bricker, A.L., and Camilli, A. 1999. Transformation of a type 4 encapsulated strain of Streptococcus pneumoniae. FEMS Microbiol. Lett. 172: 131-135. doi:10.1111/j.1574-6968.1999.tb13460.x.
3. Bruckner, R., Nuhn, M., Reichmann, P., Weber, B., and Hakenbeck, R. 2004. Mosaic genes and mosaic chromosomes - genomic variation in Streptococcus pneumoniae. Int. J. Med. Microbiol. 294: 157-168. doi:10.1016/j.ijmm.2004.06.019.
4. Di Cello, F., Xie, Y., Paul-Satyaseela, M., and Kim, K.S. 2005. Approaches to bacterial RNA isolation and purification for microarray analysis of Escherichia coli K1 interaction with human brain microvascular endothelial cells. J. Clin. Microbiol. 43: 4197-4199. doi:10.1128/JCM.43.8.4197-4199.2005.
5. Dintilhac, A., and Claverys, J.P. 1997. The adc locus, which affects competence for genetic transformation in Streptococcus pneumoniae, encodes an ABC transporter with a putative lipoprotein homologous to a family of streptococcal adhesins. Res. Microbiol. 148: 119-131. doi:10.1016/S0923-2508(97)87643-7.
6. Dintilhac, A., Alloing, G., Granadel, C., and Claverys, J.P. 1997. Competence and virulence of Streptococcus pneumoniae: Adc and PsaA mutants exhibit a requirement for Zn and Mn resulting from inactivation of putative ABC metal permeases. Mol. Microbiol. 25: 727-739. doi:10.1046/j.1365-2958.1997.5111879.x.
7. Gaynor, E.C., Cawthraw, S., Manning, G., MacKichan, J.K., Falkow, S., and Newell, D.G. 2004. The genome-sequenced variant of Campylobacter jejuni NCTC 11168 and the original clonal clinical isolate differ markedly in colonization, gene expression, and virulence-associated phenotypes. J. Bacteriol. 186: 503-517. doi:10.1128/JB.186.2.503-517.2004.
8. Hammerschmidt, S. 2006. Adherence molecules of pathogenic pneumococci. Curr. Opin. Microbiol. 9: 12-20. doi:10.1016/j.mib.2005.11.001.
9. Hammerschmidt, S., Wolff, S., Hocke, A., Rosseau, S., Muller, E., and Rohde, M. 2005. Illustration of pneumococcal polysaccharide capsule during adherence and invasion of epithelial cells. Infect. Immun. 73: 4653-4667. doi:10.1128/IAI.73.8.4653-4667.2005.
10. Hendriksen, W.T., Silva, N., Bootsma, H.J., Blue, C.E., Paterson, G.K., Kerr, A.R., et al. 2007. Regulation of gene expression in Streptococcus pneumoniae by response regulator 09 is strain dependent. J. Bacteriol. 189: 1382-1389. doi:10.1128/JB.01144-06.
11. Hirst, R.A., Kadioglu, A., O'Callaghan, C., and Andrew, P.W. 2004. The role of pneumolysin in pneumococcal pneumonia and meningitis. Clin. Exp. Immunol. 138: 195-201. doi:10.1111/j.1365-2249.2004.02611.x.
12. Hokamp, K., Roche, F.M., Acab, M., Rousseau, M.E., Kuo, B., Goode, D., et al. 2004. ArrayPipe: a flexible processing pipeline for microarray data. Nucleic Acids Res. 32: W457-W459. doi:10.1093/nar/gkh446.
13. Hsieh, Y.C., Wang, J.T., Lee, W.S., Hsueh, P.R., Shao, P.L., Chang, L.Y., et al. 2006. Serotype competence and penicillin resistance in Streptococcus pneumoniae. Emerg. Infect. Dis. 12: 1709-1714.
14. 2+-dependent regulation of multiple genes in Streptococcus pneumoniae through PsaR and the resultant impact on virulence. Infect. Immun. 74: 1171-1180. doi:10.1128/IAI.74.2.1171-1180.2006.
15. Kharat, A.S., and Tomasz, A. 2003. Inactivation of the srtA gene affects localization of surface proteins and decreases adhesion of Streptococcus pneumoniae to human pharyngeal cells in vitro. Infect. Immun. 71: 2758-2765. doi:10.1128/IAI.71.5.2758-2765.2003.
16. King, S.J., Hippe, K.R., and Weiser, J.N. 2006. Deglycosylation of human glycoconjugates by the sequential activities of exoglycosidases expressed by Streptococcus pneumoniae. Mol. Microbiol. 59: 961-974. doi:10.1111/j.1365-2958.2005.04984.x.
17. Klein, D.L. 1999. Pneumococcal disease and the role of conjugate vaccines. Microb. Drug Resist. 5: 147-157.
18. Kronenberg, A., Zucs, P., Droz, S., and Muhlemann, K. 2006. Distribution and invasiveness of Streptococcus pneumoniae serotypes in Switzerland, a country with low antibiotic selection pressure, from 2001 to 2004. J. Clin. Microbiol. 44: 2032-2038. doi:10.1128/JCM.00275-06.
19. Lanie, J.A., Ng, W.L., Kazmierczak, K.M., Andrzejewski, T.M., Davidsen, T.M., Wayne, K.J., et al. 2007. Genome sequence of Avery's virulent serotype 2 strain D39 of Streptococcus pneumoniae and comparison with that of unencapsulated laboratory strain R6. J. Bacteriol. 189: 38-51. doi:10.1128/JB.01148-06.
20. Lau, G.W., Haataja, S., Lonetto, M., Kensit, S.E., Marra, A., Bryant, A.P., et al. 2001. A functional genomic analysis of type 3 Streptococcus pneumoniae virulence. Mol. Microbiol. 40: 555-571. doi:10.1046/j.1365-2958.2001.02335.x.
21. Lau, P.C., Sung, C.K., Lee, J.H., Morrison, D.A., and Cvitkovitch, D.G. 2002. PCR ligation mutagenesis in transformable streptococci: application and efficiency. J. Microbiol. Methods, 49: 193-205. doi:10.1016/S0167- 7012(01)00369-4.
22. T method. Methods, 25: 402-408. doi:10.1006/meth.2001.1262.
23. Lu, Y.J., and Rock, C.O. 2006. Transcriptional regulation of fatty acid biosynthesis in Streptococcus pneumoniae. Mol. Microbiol. 59: 551-566. doi:10.1111/j.1365-2958.2005.04951.x.
24. McAllister, L.J., Tseng, H.J., Ogunniyi, A.D., Jennings, M.P., McEwan, A.G., and Paton, J.C. 2004. Molecular analysis of the psa permease complex of Streptococcus pneumoniae. Mol. Microbiol. 53: 889-901. doi:10.1111/j.1365-2958.2004.04164.x.
25. Mitchell, T.J. 2006. Streptococcus pneumoniae: infection, inflammation and disease. Adv. Exp. Med. Biol. 582: 111-124.
26. Musser, J.M., and DeLeo, F.R. 2005. Toward a genome-wide systems biology analysis of host-pathogen interactions in group A Streptococcus. Am. J. Pathol. 167: 1461-1472.
27. Ng, W.L., Kazmierczak, K.M., Robertson, G.T., Gilmour, R., and Winkler, M.E. 2003. Transcriptional regulation and signature patterns revealed by microarray analyses of Streptococcus pneumoniae R6 challenged with sublethal concentrations of translation inhibitors. J. Bacteriol. 185: 359-370. doi:10.1128/JB.185.1.359-370.2003.
28. Orihuela, C.J., Radin, J.N., Sublett, J.E., Gao, G., Kaushal, D., and Tuomanen, E.I. 2004. Microarray analysis of pneumococcal gene expression during invasive disease. Infect. Immun. 72: 5582-5596. doi:10.1128/IAI.72.10. 5582-5596.2004.
29. Panina, E.M., Mironov, A.A., and Gelfand, M.S. 2003. Comparative genomics of bacterial zinc regulons: enhanced ion transport, pathogenesis, and rearrangement of ribosomal proteins. Proc. Natl. Acad. Sci. U.S.A. 100: 9912-9917. doi:10.1073/pnas.1733691100.
30. Reymond, N., Charles, H., Duret, L., Calevro, F., Beslon, G., and Fayard, J.M. 2004. ROSO: optimizing oligonucleotide probes for microarrays. Bioinformatics, 20: 271-273. doi:10.1093/bioinformatics/btg401.
31. Silva, N.A., McCluskey, J., Jefferies, J.M., Hinds, J., Smith, A., Clarke, S.C., et al. 2006. Genomic diversity between strains of the same serotype and multilocus sequence type among pneumococcal clinical isolates. Infect. Immun. 74: 3513-3518. doi:10.1128/IAI.00079-06.
32. Sinha, S.C., Krahn, J., Shin, B.S., Tomchick, D.R., Zalkin, H., and Smith, J.L. 2003. The purine repressor of Bacillus subtilis: a novel combination of domains adapted for transcription regulation. J. Bacteriol. 185: 4087-4098. doi:10.1128/JB.185.14.4087-4098.2003.
33. Song, X.M., Perez-Casal, J., and Potter, A.A. 2004. The Mig protein of Streptococcus dysgalactiae inhibits bacterial internalization into bovine mammary gland epithelial cells. FEMS Microbiol. Lett. 231: 33-38. doi:10.1016/S0378-1097(03)00923-6.
34. Song, J.H., Ko, K.S., Lee, J.Y., Baek, J.Y., Oh, W.S., Yoon, H.S., et al. 2005. Identification of essential genes in Streptococcus pneumoniae by allelic replacement mutagenesis. Mol. Cells, 19: 365-374.
35. Wilkinson, S.P., and Grove, A. 2006. Ligand-responsive transcriptional regulation by members of the MarR family of winged helix proteins. Curr. Issues Mol. Biol. 8: 51-62.
36. Williams, S.P., Tait-Kamradt, A.G., Norton, J.E., Albert, T.J., and Dougherty, T.J. 2007. Nucleotide sequence changes between Streptococcus pneumoniae R6 and D39 strains determined by an oligonucleotide hybridization DNA sequencing technology. J. Microbiol. Methods, 70: 65-74. doi:10.1016/j.mimet.2007.03.009.