On Recursive Production and Evolvability of Cells: Catalytic Reaction Network Approach

Geometric Structures of Phase Space in Multidimensional Chaos: Applications to Chemical Reaction Dynamics in Complex Systems

Volumn 130, Issue , 2005, Pages 543-598

  Kaneko, Kunihiko ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

Chemical reaction network; Constructive biology; Evolution; Heredity; Hypercycle; Log normal distribution; Minority control; Origin of Life; Self reproduction

Indexed keywords

CATALYSIS; CYTOLOGY; GENES; INDICATORS (CHEMICAL); INFORMATION DISSEMINATION; MOLECULES; NORMAL DISTRIBUTION;

CHEMICAL REACTION NETWORKS; EVOLUTION; HEREDITY; HYPERCYCLE; LOG-NORMAL DISTRIBUTION; ORIGIN OF LIFE; SELF REPRODUCTION;

SYNTHESIS (CHEMICAL);

EID: 40849109174     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/0471712531.ch27     Document Type: Chapter

References (55)

1. K. Kaneko What is Life?: A Complex Systems Approach, University of Tokyo Press, Tokyo, 2003 (in Japanese).
2. K. Kaneko and T. Yomo, J. Theor. Biol. 214, 563-576 (2002).
3. C. Shannon and W. Weaver, The Mathematical Theory of Communication, University of llinois Press, Champaign, IL, 1949.
4. L. Brillouin, Science and Information Theory, Academic Press, New York, 1969.
5. H. Jeong et al., Nature 407, 651 (2000);
6. H. Jeong, S. P. Mason, and A.-L. Barabási, Nature 411, 41 (2001).
7. D. R. Mills, R. L. Peterson, and S. Spiegelman, Proc. Natl. Acad. Sci. USA 58, 217; (1967)
8. D. R. Mills, F. R. Kramer, and S. Spiegelman, Science 180, 916 (1973).
9. M. Eigen and P. Schuster, The Hypercycle, Springer, Berlin, 1979.
10. M. Boerlijst and P. Hogeweg, Physica 48D, 17 (1991);
11. P. Hogeweg, Physica 75D, 275-291 (1994).
12. F. Dyson, Origins of Life, Cambridge University Press, Cambridge, 1985.
13. S. A. Kauffman, The Origin of Order, Oxford University Press, New York, 1993.
14. R. Bagley, J. D. Farmer, and S. Kauffmans, in Artificial Life, C. Langton, ed., 1989, pp. 93-140.
15. A. G. Cairns-Smith, Clay Minerals and the Origin of Life, Cambridge University Press, New York, 1982.
16. K. Kaneko, in Function and Regulation of Cellular Systems, A. Deutsch et al., eds., Birkhauser, Boston, 2003.
17. K. Kaneko, Complexity 3, 53-60 (1998).
18. K. Kaneko and T. Yomo, Physica 75D, 89-102 (1994); Bull. Math. Biol. 59, 139 (1997); J. Theor. Biol. 199, 243-256 (1999).
19. C. Furusawa and K. Kaneko, Bull. Math. Biol. 60, 659-687 (1998); Phys. Rev. Lett. 84, 6130-6133 (2000); J. Theor. Biol. 209, 395-416 (2001); Anat. Rec. 268, 327-342 (2002); J. Theor. Biol. 224, 413-435 (2003).
20. K. Kaneko and T. Yomo, Proc. R. Soc. B 267, 2367-2373 (2000);
21. K. Kaneko, Popul. Ecol. 44, 71-85 (2002).
22. T. Matsuura, T. Yomo, M. Yamaguchi, N. Shibuya., E. P. Ko-Mitamura, Y. Shima, and I. Urabe, Proc. Natl. Acad. Sci. USA 99, 7514-7517 (2002).
23. E. Ko, T. Yomo, and I. Urabe, Physica 75D, 81-88 (1993).
24. A. Kashiwagi, W. Noumachi, M. Katsuno, M. T. Alam, I. Urabe, and T. J. Yomo, Mol. Evol. 52, 502-509 (2001).
25. A. Kashiwagi, I. Urabe, K. Kaneko, and T. Yomo, submitted 2003.
26. T. Ariizumi and M. Asashima, Int. J. Dev. Biol. 45, 273-279 (2001).
27. C. Langton, eds., Artificial Life Addison-Wesley, Reading, MA, 1989.
28. W. Fontana and L. W. Buss, Bull. Math. Biol. 56, 1-64 (1994).
29. A. Awazu and K. Kaneko, preprint 2003.
30. C. Furusawa and K. Kaneko, Phys. Rev. Lett. 90, 088102 (2003).
31. B. Alberts, D. Bray, J. Lewis, M. Raff, K. Roberts, and J. D.Watson, TheMolecular Biology of the Cell, 1983, 1989, 1994, 2002.
32. B. Hess and A. Mikhailov, Science 264, 223 (1994);
33. A.Mikhailov and B. Hess, J. Theor. Biol. 176, 185-192 (1995).
34. Y. Togashi and K. Kaneko, Phys. Rev. Lett. 86, 2459 (2001)
35. E. Szathmary and J. Maynard Smith, J. Theor. Biol. 187, 555-571 (1997).
36. M. Eigen, Steps Towards Life, Oxford University Press, New York, 1992.
37. K. Kaneko, J. Biol. Phys. 28, 781 (2002); Adv. Complex Syst. 6, 79-92 (2003).
38. K. Kaneko, Phys. Rev. E 68, 031909 (2003).
39. D. Segré, D. Ben-Eli, and D. Lancet, Proc. Natl. Acad. Sci. USA 97, 4112 (2000);
40. D. Segré et al., J. Theor. Biol. 213, 481 (2001);
41. D. Segré and D. Lancet, EMBO Rep. 1, 217 (2000).
42. J. Hofbauer and K. Sigmund, Evolutionary Games and Population Dynamics, Cambridge University Press, Cambridge, 1998.
43. K. Kaneko and T. Ikegami, Physica D 56, 406-429 (1992).
44. T. Ikegami and T. Hashimoto, Artifi. Life 2, 305-318 (1996).
45. H. Takagi and K. Kaneko, preprint 2003.
46. A. S. Mikhailov and V. Calenbuhr, From Cells to Societies, Springer, Berlin, 2002.
47. D. Sornette, Critical Phenomena in Natural Science, Springer, Berlin, 2002.
48. C. Furusawa, T. Suzuki, A. Kashiwagi, T. Yomo, and K. Kaneko, Ubiquity of Log-Normal Distribution in Gene Expression, preprint.
49. G. K. Zipf, Human Behavior and the Principle of Least Effort, Addison-Wesley, Cambridge, 1949.
50. K. Sato, Y. Ito, T. Yomo, and K. Kaneko, Proc. Natl. Acad. Sci. USA 100, 14086-14090 (2003).
51. K. Kaneko, Physica D 41, 137-172 (1990).
52. I. Tsuda, Neural Networks 5, 313 (1992).
53. K. Kaneko and I. Tsuda, ed., Focus issue on "Chaotic Itinerancy," Chaos 13, 926 (2003).
54. Y. Togashi and K. Kaneko, J. Phys. Soc. Japan 72, 62-68 (2003); preprint 2003.
55. K. Kaneko, Adv. Complex Syst. 6, 79-92 (2003).