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Volumn 178, Issue 1, 2008, Pages 427-437

Testing for archaic hominin admixture on the X chromosome: Model likelihoods for the modern human RRM2P4 region from summaries of genealogical topology under the structured coalescent

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DNA HYBRIDIZATION; DNA SEQUENCE; GENETIC ANALYSIS; GENETIC VARIABILITY; HUMAN; PRIORITY JOURNAL; PSEUDOGENE; X CHROMOSOME;

EID: 40849086684     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.107.080432     Document Type: Article
Times cited : (26)

References (37)
  • 1
    • 9144273827 scopus 로고    scopus 로고
    • Early dispersal of Homo from Africa
    • ANTON, S. C., and C. C. SWISHER, 2004 Early dispersal of Homo from Africa. Annu. Rev. Anthropol. 33: 271-296.
    • (2004) Annu. Rev. Anthropol , vol.33 , pp. 271-296
    • ANTON, S.C.1    SWISHER, C.C.2
  • 2
    • 27244436951 scopus 로고    scopus 로고
    • The heritage of pathogen pressures and ancient demography in the human innate-immunity CD209/CD209L region
    • BARREIRO, L. B., E. PATIN, O. NEYROLLES, H. M. CANN, B. GICQUEL et al., 2005 The heritage of pathogen pressures and ancient demography in the human innate-immunity CD209/CD209L region. Am. J. Hum. Genet. 77: 869-886.
    • (2005) Am. J. Hum. Genet , vol.77 , pp. 869-886
    • BARREIRO, L.B.1    PATIN, E.2    NEYROLLES, O.3    CANN, H.M.4    GICQUEL, B.5
  • 3
    • 0346218002 scopus 로고    scopus 로고
    • A comparison of two popular statistical methods for estimating the time to most recent common ancestor (TMRCA) from a sample of DNA sequences
    • BASU, A., and P. MAJUMDAR, 2003 A comparison of two popular statistical methods for estimating the time to most recent common ancestor (TMRCA) from a sample of DNA sequences. J. Genet. 82: 7-12.
    • (2003) J. Genet , vol.82 , pp. 7-12
    • BASU, A.1    MAJUMDAR, P.2
  • 4
    • 0036964474 scopus 로고    scopus 로고
    • Approximate Bayesian computation in population genetics
    • BEAUMONT, M. A., W. ZHANG and D. J. BALDING, 2002 Approximate Bayesian computation in population genetics. Genetics 162: 2025-2035.
    • (2002) Genetics , vol.162 , pp. 2025-2035
    • BEAUMONT, M.A.1    ZHANG, W.2    BALDING, D.J.3
  • 6
    • 0012714531 scopus 로고    scopus 로고
    • A diffusion wave out of Africa: The mechanism of the modern human revolution?
    • ESWARAN, V., 2002 A diffusion wave out of Africa: the mechanism of the modern human revolution? Curr. Anthropol. 43: 749-774.
    • (2002) Curr. Anthropol , vol.43 , pp. 749-774
    • ESWARAN, V.1
  • 7
    • 33845335816 scopus 로고    scopus 로고
    • Evidence that the adaptive allele of the brain size gene microcephalin introgressed into Homo sapiens from an archaic Homo lineage
    • EVANS, P. D., N. MEKEL-BOBROV, E. J. VALLENDER, R. R. HUDSON and B. T. LAHN, 2006 Evidence that the adaptive allele of the brain size gene microcephalin introgressed into Homo sapiens from an archaic Homo lineage. Proc. Natl. Acad. Sci. USA 103: 18178-18183.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 18178-18183
    • EVANS, P.D.1    MEKEL-BOBROV, N.2    VALLENDER, E.J.3    HUDSON, R.R.4    LAHN, B.T.5
  • 8
    • 26044441323 scopus 로고    scopus 로고
    • Cross-cultural estimation of the human generation interval for use in genetics-based population divergence studies
    • FENNER, J. N., 2005 Cross-cultural estimation of the human generation interval for use in genetics-based population divergence studies. Am. J. Phys. Anthropol. 128: 415-423.
    • (2005) Am. J. Phys. Anthropol , vol.128 , pp. 415-423
    • FENNER, J.N.1
  • 9
    • 33747457749 scopus 로고    scopus 로고
    • Reconstructing human origins in the genomic era
    • GARRIGAN, D., and M. F. HAMMER, 2006 Reconstructing human origins in the genomic era. Nat. Rev. Genet. 7: 669-680.
    • (2006) Nat. Rev. Genet , vol.7 , pp. 669-680
    • GARRIGAN, D.1    HAMMER, M.F.2
  • 10
    • 25444460109 scopus 로고    scopus 로고
    • Deep haplotype divergence and long-range linkage disequilibrium at Xp21.1 provide evidence that humans descend from a structured ancestral population
    • GARRIGAN, D., Z. MOBASHER, S. B. KINGAN, J. A. WILDER and M. F. HAMMER, 2005a Deep haplotype divergence and long-range linkage disequilibrium at Xp21.1 provide evidence that humans descend from a structured ancestral population. Genetics 170: 1849-1856.
    • (2005) Genetics , vol.170 , pp. 1849-1856
    • GARRIGAN, D.1    MOBASHER, Z.2    KINGAN, S.B.3    WILDER, J.A.4    HAMMER, M.F.5
  • 13
    • 34548452457 scopus 로고
    • Simulating probability distributions in the coalescent
    • GRIFFITHS, R. C., and S. TAVARÉ, 1994 Simulating probability distributions in the coalescent. Theor. Popul. Biol. 46: 131-159.
    • (1994) Theor. Popul. Biol , vol.46 , pp. 131-159
    • GRIFFITHS, R.C.1    TAVARÉ, S.2
  • 14
    • 0030949513 scopus 로고    scopus 로고
    • Archaic African and Asian lineages in the genetic ancestry of modern humans
    • HARDING, R. M., S. M. FULLERTON, R. C. GRIFFITHS, J. BOND, M. J. COX et al., 1997 Archaic African and Asian lineages in the genetic ancestry of modern humans. Am. J. Hum. Genet. 60: 772-789.
    • (1997) Am. J. Hum. Genet , vol.60 , pp. 772-789
    • HARDING, R.M.1    FULLERTON, S.M.2    GRIFFITHS, R.C.3    BOND, J.4    COX, M.J.5
  • 15
    • 33644780854 scopus 로고    scopus 로고
    • Fixation of the human-specific CMP-N-acetylneuraminic acid hydroxylase pseudogene and implications of haplotype diversity for human evolution
    • HAYAKAWA, T., I. AKI, A. VARKI, Y. SATTA and N. TAKAHATA, 2006 Fixation of the human-specific CMP-N-acetylneuraminic acid hydroxylase pseudogene and implications of haplotype diversity for human evolution. Genetics 172: 1139-1146.
    • (2006) Genetics , vol.172 , pp. 1139-1146
    • HAYAKAWA, T.1    AKI, I.2    VARKI, A.3    SATTA, Y.4    TAKAHATA, N.5
  • 16
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • HUDSON, R. R., 2002 Generating samples under a Wright-Fisher neutral model of genetic variation. Bioinformatics 18: 337-338.
    • (2002) Bioinformatics , vol.18 , pp. 337-338
    • HUDSON, R.R.1
  • 17
    • 0037003075 scopus 로고    scopus 로고
    • High levels of Y-chromosome differentiation among native Siberian populations and the genetic signature of a boreal hunter-gatherer way of life
    • KARAFET, T. M., L. P. OSIPOVA, M. A. GUBINA, O. L. POSUKH, S. L. ZEGURA et al., 2002 High levels of Y-chromosome differentiation among native Siberian populations and the genetic signature of a boreal hunter-gatherer way of life. Hum. Biol. 74: 761-789.
    • (2002) Hum. Biol , vol.74 , pp. 761-789
    • KARAFET, T.M.1    OSIPOVA, L.P.2    GUBINA, M.A.3    POSUKH, O.L.4    ZEGURA, S.L.5
  • 18
    • 0002556819 scopus 로고
    • KINGMAN, J. F. C, Editor, Applied Probability Trust, Sheffield, UK
    • KINGMAN, J. F. C. (Editor), 1982 On the Genealogy of Large Populations. Applied Probability Trust, Sheffield, UK.
    • (1982) On the Genealogy of Large Populations
  • 19
    • 0027389296 scopus 로고
    • DNA sequence variation at the period locus within and among species at the Drosophila melangaster complex
    • KLIMAN, R. M., and J. HEY, 1993 DNA sequence variation at the period locus within and among species at the Drosophila melangaster complex. Genetics 133: 375-387.
    • (1993) Genetics , vol.133 , pp. 375-387
    • KLIMAN, R.M.1    HEY, J.2
  • 20
    • 0033790285 scopus 로고    scopus 로고
    • Archaic lineages in the history of modern humans
    • LABUDA, D., E. ZIȨTKIEWICZ and V. YOTOVA, 2000 Archaic lineages in the history of modern humans. Genetics 156: 799-808.
    • (2000) Genetics , vol.156 , pp. 799-808
    • LABUDA, D.1    ZIȨTKIEWICZ, E.2    YOTOVA, V.3
  • 21
    • 0034493580 scopus 로고    scopus 로고
    • The revolution that wasn't: A new interpretation of the origin of modern human behavior
    • MCBREARTY, S., and A. S. BROOKS, 2000 The revolution that wasn't: a new interpretation of the origin of modern human behavior. J. Hum. Evol. 39: 453-563.
    • (2000) J. Hum. Evol , vol.39 , pp. 453-563
    • MCBREARTY, S.1    BROOKS, A.S.2
  • 22
    • 13944279562 scopus 로고    scopus 로고
    • Stratigraphic placement and age of modern humans from Kibish, Ethiopia
    • MCDOUGALL, I., F. H. BROWN and J. G. FLEAGLE, 2005 Stratigraphic placement and age of modern humans from Kibish, Ethiopia. Nature 433: 733-736.
    • (2005) Nature , vol.433 , pp. 733-736
    • MCDOUGALL, I.1    BROWN, F.H.2    FLEAGLE, J.G.3
  • 23
    • 33750964658 scopus 로고    scopus 로고
    • Scanning the human genome for signals of selection
    • MCVEAN, G., and C. C. SPENCER, 2006 Scanning the human genome for signals of selection. Curr. Opin. Genet. Dev. 16: 624-629.
    • (2006) Curr. Opin. Genet. Dev , vol.16 , pp. 624-629
    • MCVEAN, G.1    SPENCER, C.C.2
  • 24
    • 0030790185 scopus 로고    scopus 로고
    • Structured coalescent processes on different time scales
    • NORDBORG, M., 1997 Structured coalescent processes on different time scales. Genetics 146: 1501-1514.
    • (1997) Genetics , vol.146 , pp. 1501-1514
    • NORDBORG, M.1
  • 26
    • 33746585377 scopus 로고    scopus 로고
    • Possible ancestral structure in human populations
    • PLAGNOL, V., and J. D. WALL, 2006 Possible ancestral structure in human populations. PLoS Genet. 2: e105.
    • (2006) PLoS Genet , vol.2
    • PLAGNOL, V.1    WALL, J.D.2
  • 27
    • 1642320096 scopus 로고    scopus 로고
    • The distribution of the ancestral haplotype in finite stepping-stone models with population expansion
    • SATTA, Y., and N. TAKAHATA, 2004 The distribution of the ancestral haplotype in finite stepping-stone models with population expansion. Mol. Ecol. 13: 877-886.
    • (2004) Mol. Ecol , vol.13 , pp. 877-886
    • SATTA, Y.1    TAKAHATA, N.2
  • 28
    • 0001085724 scopus 로고
    • On the genealogy of nested subsamples from a haploid population
    • SAUNDERS, I. W., S. TAVARÉ and G. A. WATTERSON, 1984 On the genealogy of nested subsamples from a haploid population. Adv. Appl. Probab. 16: 471-491.
    • (1984) Adv. Appl. Probab , vol.16 , pp. 471-491
    • SAUNDERS, I.W.1    TAVARÉ, S.2    WATTERSON, G.A.3
  • 29
    • 33847626542 scopus 로고    scopus 로고
    • Divergent haplotypes and human history as revealed in a worldwide survey of X-linked DNA sequence variation
    • SHIMADA, M. K., K. PANCHAPAKESAN, S. TISHKOFF, A. Q. NATO, JR. and J. HEY, 2007 Divergent haplotypes and human history as revealed in a worldwide survey of X-linked DNA sequence variation. Mol. Biol. Evol. 24: 687-698.
    • (2007) Mol. Biol. Evol , vol.24 , pp. 687-698
    • SHIMADA, M.K.1    PANCHAPAKESAN, K.2    TISHKOFF, S.3    NATO JR., A.Q.4    HEY, J.5
  • 31
    • 0035144108 scopus 로고    scopus 로고
    • Testing multiregionality of modern human origins
    • TAKAHATA, N., S. H. LEE and Y. SATTA, 2001 Testing multiregionality of modern human origins. Mol. Biol. Evol. 18: 172-183.
    • (2001) Mol. Biol. Evol , vol.18 , pp. 172-183
    • TAKAHATA, N.1    LEE, S.H.2    SATTA, Y.3
  • 32
    • 0036262985 scopus 로고    scopus 로고
    • Frequentist estimation of coalescence times from nucleotide sequence data using a tree-based partition
    • TANG, H., D. O. SIEGMUND, P. SHEN, P. J. OEFNER and M. W. FELDMAN, 2002 Frequentist estimation of coalescence times from nucleotide sequence data using a tree-based partition. Genetics 161: 447-459.
    • (2002) Genetics , vol.161 , pp. 447-459
    • TANG, H.1    SIEGMUND, D.O.2    SHEN, P.3    OEFNER, P.J.4    FELDMAN, M.W.5
  • 33
    • 0037034778 scopus 로고    scopus 로고
    • TEMPLETON, A., 2002 Out of Africa again and again. Nature 416: 45-51.
    • TEMPLETON, A., 2002 Out of Africa again and again. Nature 416: 45-51.
  • 34
    • 0034090691 scopus 로고    scopus 로고
    • Detecting ancient admixture in humans using sequence polymorphism data
    • WALL, J. D., 2000 Detecting ancient admixture in humans using sequence polymorphism data. Genetics 154: 1271-1279.
    • (2000) Genetics , vol.154 , pp. 1271-1279
    • WALL, J.D.1
  • 35
    • 33750951625 scopus 로고    scopus 로고
    • Archaic admixture in the human genome
    • WALL, J. D., and M. F. HAMMER, 2006 Archaic admixture in the human genome. Curr. Opin. Genet. Dev. 16: 606-610.
    • (2006) Curr. Opin. Genet. Dev , vol.16 , pp. 606-610
    • WALL, J.D.1    HAMMER, M.F.2
  • 36
    • 0036178949 scopus 로고    scopus 로고
    • A nomenclature system for the tree of human Y-chromosomal binary haplogroups
    • Y CHROMOSOME CONSORTIUM
    • Y CHROMOSOME CONSORTIUM, 2002 A nomenclature system for the tree of human Y-chromosomal binary haplogroups. Genome Res. 12: 339-348.
    • (2002) Genome Res , vol.12 , pp. 339-348
  • 37
    • 0242407044 scopus 로고    scopus 로고
    • Haplotypes in the Dystrophin DNA segment point to a mosaic origin of modern human diversity
    • ZIȨTKIEWICZ, E., V. YOTOVA, D. GEHL, T. WAMBACH, I. ARRIETA et al., 2003 Haplotypes in the Dystrophin DNA segment point to a mosaic origin of modern human diversity. Am. J. Hum. Genet. 73: 994-1015.
    • (2003) Am. J. Hum. Genet , vol.73 , pp. 994-1015
    • ZIȨTKIEWICZ, E.1    YOTOVA, V.2    GEHL, D.3    WAMBACH, T.4    ARRIETA, I.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.