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Volumn 53, Issue 6, 2008, Pages 1027-1034

Extrachromosomal circular DNA derived from tandemly repeated genomic sequences in plants

Author keywords

Copy number polymorphisms; Extrachromosomal circular DNA; Genome evolution; Ribosomal DNA; Tandem repeats

Indexed keywords

GENES; MOLECULAR STRUCTURE; PLANTS (BOTANY); POLYMORPHISM; YEAST;

EID: 40549104792     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/j.1365-313X.2007.03394.x     Document Type: Article
Times cited : (93)

References (46)
  • 1
    • 0028873712 scopus 로고
    • Nuclear DNA amounts in angiosperms
    • Bennett, M.D. Leitch, I.J. (1995) Nuclear DNA amounts in angiosperms. Ann. Bot. 76, 113 176.
    • (1995) Ann. Bot. , vol.76 , pp. 113-176
    • Bennett, M.D.1    Leitch, I.J.2
  • 2
    • 40549112962 scopus 로고
    • Extrachromosomal DNA from a dicot plant Vigna radiata
    • Bhattachyryya, N. Roy, P. (1986) Extrachromosomal DNA from a dicot plant Vigna radiata. FEBS Lett. 208, 386 390.
    • (1986) FEBS Lett. , vol.208 , pp. 386-390
    • Bhattachyryya, N.1    Roy, P.2
  • 3
    • 0014407722 scopus 로고
    • Repeated sequences in DNA
    • Britten, R.J. Kohne, D.E. (1968) Repeated sequences in DNA. Science, 161, 529.
    • (1968) Science , vol.161 , pp. 529
    • Britten, R.J.1    Kohne, D.E.2
  • 4
    • 0026579423 scopus 로고
    • Sequence and organization of 5s ribosomal RNA encoding genes of Arabidopsis thaliana
    • Campell, B.R., Song, Y.G., Posch, T.E., Cullis, C.A. Town, C.D. (1992) Sequence and organization of 5s ribosomal RNA encoding genes of Arabidopsis thaliana. Gene, 112, 225 228.
    • (1992) Gene , vol.112 , pp. 225-228
    • Campell, B.R.1    Song, Y.G.2    Posch, T.E.3    Cullis, C.A.4    Town, C.D.5
  • 5
    • 0028108183 scopus 로고
    • The evolutionary dynamics of repetitive DNA in eukaryotes
    • Charlesworth, B., Sniegowski, P. Stephan, W. (1994) The evolutionary dynamics of repetitive DNA in eukaryotes. Nature, 371, 215 220.
    • (1994) Nature , vol.371 , pp. 215-220
    • Charlesworth, B.1    Sniegowski, P.2    Stephan, W.3
  • 6
    • 0029924018 scopus 로고    scopus 로고
    • Induction of circles of heterogeneous sizes in carcinogen-treated cells: Two-dimensional gel analysis of circular DNA molecules
    • Cohen, S. Lavi, S. (1996) Induction of circles of heterogeneous sizes in carcinogen-treated cells: two-dimensional gel analysis of circular DNA molecules. Mol. Cell. Biol. 16, 2002 2014.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 2002-2014
    • Cohen, S.1    Lavi, S.2
  • 7
    • 0035875136 scopus 로고    scopus 로고
    • A novel cell-free system reveals a mechanism of circular DNA formation from tandem repeats
    • Cohen, S. Mechali, M. (2001) A novel cell-free system reveals a mechanism of circular DNA formation from tandem repeats. Nucleic Acids Res. 29, 2542 2548.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 2542-2548
    • Cohen, S.1    Mechali, M.2
  • 8
    • 0036960825 scopus 로고    scopus 로고
    • Formation of extrachromosomal circles from telomeric DNA in Xenopus laevis
    • Cohen, S. Mechali, M. (2002) Formation of extrachromosomal circles from telomeric DNA in Xenopus laevis. EMBO Rep. 3, 1168 1174.
    • (2002) EMBO Rep. , vol.3 , pp. 1168-1174
    • Cohen, S.1    Mechali, M.2
  • 9
    • 0030898526 scopus 로고    scopus 로고
    • Small polydispersed circular DNA (spcDNA) in human cells: Association with genomic instability
    • Cohen, S., Regev, A. Lavi, S. (1997) Small polydispersed circular DNA (spcDNA) in human cells: association with genomic instability. Oncogene, 14, 977 985.
    • (1997) Oncogene , vol.14 , pp. 977-985
    • Cohen, S.1    Regev, A.2    Lavi, S.3
  • 10
    • 0032824151 scopus 로고    scopus 로고
    • Regulated formation of extrachromosomal circular DNA molecules during development in Xenopus laevis
    • Cohen, S., Menut, S. Mechali, M. (1999) Regulated formation of extrachromosomal circular DNA molecules during development in Xenopus laevis. Mol. Cell. Biol. 19, 6682 6689.
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 6682-6689
    • Cohen, S.1    Menut, S.2    Mechali, M.3
  • 11
    • 0038817792 scopus 로고    scopus 로고
    • Extrachromosomal circular DNA of tandemly repeated genomic sequences in Drosophila
    • Cohen, S., Yacobi, K. Segal, D. (2003) Extrachromosomal circular DNA of tandemly repeated genomic sequences in Drosophila. Genome Res. 13, 1133 1145.
    • (2003) Genome Res. , vol.13 , pp. 1133-1145
    • Cohen, S.1    Yacobi, K.2    Segal, D.3
  • 12
    • 23344447972 scopus 로고    scopus 로고
    • Evidence for rolling circle replication of tandem genes in Drosophila
    • Cohen, S., Agmon, N., Yacobi, K., Mislovati, M. Segal, D. (2005) Evidence for rolling circle replication of tandem genes in Drosophila. Nucleic Acids Res. 33, 4519 4526.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 4519-4526
    • Cohen, S.1    Agmon, N.2    Yacobi, K.3    Mislovati, M.4    Segal, D.5
  • 13
    • 33746827680 scopus 로고    scopus 로고
    • Mouse major satellite DNA is prone to eccDNA formation via DNA ligase IV-dependent pathway
    • Cohen, Z., Bacharach, E. Lavi, S. (2006) Mouse major satellite DNA is prone to eccDNA formation via DNA ligase IV-dependent pathway. Oncogene, 25, 4515 4524.
    • (2006) Oncogene , vol.25 , pp. 4515-4524
    • Cohen, Z.1    Bacharach, E.2    Lavi, S.3
  • 14
    • 0025280090 scopus 로고
    • A repeated chromosomal DNA sequence is amplified as a circular extrachromosomal molecule in rice (Oryza sativa L.)
    • Cuzzoni, E., Ferretti, L., Giordani, C., Castiglione, S. Sala, F. (1990) A repeated chromosomal DNA sequence is amplified as a circular extrachromosomal molecule in rice (Oryza sativa L.). Mol. Gen. Genet. 222, 58 64.
    • (1990) Mol. Gen. Genet. , vol.222 , pp. 58-64
    • Cuzzoni, E.1    Ferretti, L.2    Giordani, C.3    Castiglione, S.4    Sala, F.5
  • 15
    • 0024729318 scopus 로고
    • Extrachromosomal circular DNAs in Drosophila melanogaster: Comparison between embryos and Kc0% cells
    • Degroote, F., Pont, G., Micard, D. Picard, G. (1989) Extrachromosomal circular DNAs in Drosophila melanogaster: comparison between embryos and Kc0% cells. Chromosoma, 98, 201 206.
    • (1989) Chromosoma , vol.98 , pp. 201-206
    • Degroote, F.1    Pont, G.2    Micard, D.3    Picard, G.4
  • 16
    • 0036061848 scopus 로고    scopus 로고
    • Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis
    • Devos, K.M., Brown, J.K. Bennetzen, J.L. (2002) Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis. Genome Res. 12, 1075 1079.
    • (2002) Genome Res. , vol.12 , pp. 1075-1079
    • Devos, K.M.1    Brown, J.K.2    Bennetzen, J.L.3
  • 17
    • 0025672711 scopus 로고
    • Extrachromosomal circular DNAs and genomic sequence plasticity in eukaryotic cells
    • Gaubatz, J.W. (1990) Extrachromosomal circular DNAs and genomic sequence plasticity in eukaryotic cells. Mutat. Res. 237, 271 292.
    • (1990) Mutat. Res. , vol.237 , pp. 271-292
    • Gaubatz, J.W.1
  • 18
    • 0025160913 scopus 로고
    • Organization of the 5s ribosomal-RNA genes in the soybean Glycine max (L) Merrill and conservation of the 5s rDNA repeat structure in higher plants
    • Gottlobmchugh, S.G., Levesque, M., Mackenzie, K., Olson, M., Yarosh, O. Johnson, D.A. (1990) Organization of the 5s ribosomal-RNA genes in the soybean Glycine max (L) Merrill and conservation of the 5s rDNA repeat structure in higher plants. Genome, 33, 486 494.
    • (1990) Genome , vol.33 , pp. 486-494
    • Gottlobmchugh, S.G.1    Levesque, M.2    MacKenzie, K.3    Olson, M.4    Yarosh, O.5    Johnson, D.A.6
  • 19
    • 0028809948 scopus 로고
    • Extrachromosomal circular forms of the tobacco retrotransposon Tto1
    • Hirochika, H. Otsuki, H. (1995) Extrachromosomal circular forms of the tobacco retrotransposon Tto1. Gene, 165, 229 232.
    • (1995) Gene , vol.165 , pp. 229-232
    • Hirochika, H.1    Otsuki, H.2
  • 20
    • 0031443346 scopus 로고    scopus 로고
    • A repetitive DNA sequence common to the different B chromosomes of the genus Brachycome
    • Houben, A., Leach, C.R., Verlin, D., Rofe, R. Timmis, J.N. (1997) A repetitive DNA sequence common to the different B chromosomes of the genus Brachycome. Chromosoma, 106, 513 519.
    • (1997) Chromosoma , vol.106 , pp. 513-519
    • Houben, A.1    Leach, C.R.2    Verlin, D.3    Rofe, R.4    Timmis, J.N.5
  • 21
    • 0033943032 scopus 로고    scopus 로고
    • Cloning and characterisation of polymorphic heterochromatic segments of Brachycome dichromosomatica
    • Houben, A., Wanner, G., Hanson, L., Verlin, D., Leach, C.R. Timmis, J.N. (2000) Cloning and characterisation of polymorphic heterochromatic segments of Brachycome dichromosomatica. Chromosoma, 109, 206 213.
    • (2000) Chromosoma , vol.109 , pp. 206-213
    • Houben, A.1    Wanner, G.2    Hanson, L.3    Verlin, D.4    Leach, C.R.5    Timmis, J.N.6
  • 22
    • 0035652204 scopus 로고    scopus 로고
    • The genomic complexity of micro B chromosomes of Brachycome dichromosomatica
    • Houben, A., Verlin, D., Leach, C.R. Timmis, J.N. (2001) The genomic complexity of micro B chromosomes of Brachycome dichromosomatica. Chromosoma, 110, 451 459.
    • (2001) Chromosoma , vol.110 , pp. 451-459
    • Houben, A.1    Verlin, D.2    Leach, C.R.3    Timmis, J.N.4
  • 23
    • 0025856926 scopus 로고
    • Improved telomere detection using a telomere repeat probe (TTAGGG)n generated by PCR
    • Ijdo, J.W., Wells, R.A., Baldini, A. Reeders, S.T. (1991) Improved telomere detection using a telomere repeat probe (TTAGGG)n generated by PCR. Nucleic Acids Res. 19, 4780.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 4780
    • Ijdo, J.W.1    Wells, R.A.2    Baldini, A.3    Reeders, S.T.4
  • 24
    • 0141726792 scopus 로고    scopus 로고
    • B chromosomes in plants: Escapees from the a chromosome genome?
    • Jones, N. Houben, A. (2003) B chromosomes in plants: escapees from the A chromosome genome? Trends Plant Sci. 8, 417 423.
    • (2003) Trends Plant Sci. , vol.8 , pp. 417-423
    • Jones, N.1    Houben, A.2
  • 25
    • 15044362584 scopus 로고    scopus 로고
    • Structure and genomic organization of centromeric repeats in Arabidopsis species
    • Kawabe, A. Nasuda, S. (2005) Structure and genomic organization of centromeric repeats in Arabidopsis species. Mol. Genet. Genomics, 272, 593 602.
    • (2005) Mol. Genet. Genomics , vol.272 , pp. 593-602
    • Kawabe, A.1    Nasuda, S.2
  • 27
    • 0034675997 scopus 로고    scopus 로고
    • Species-specific double-strand break repair and genome evolution in plants
    • Kirik, A., Salomon, S. Puchta, H. (2000) Species-specific double-strand break repair and genome evolution in plants. EMBO J. 19, 5562 5566.
    • (2000) EMBO J. , vol.19 , pp. 5562-5566
    • Kirik, A.1    Salomon, S.2    Puchta, H.3
  • 28
    • 0022474241 scopus 로고
    • A repetitive DNA family (Sau3A family) in human chromosomes: Extrachromosomal DNA and DNA polymorphism
    • Kiyama, R., Matsui, H. Oishi, M. (1986) A repetitive DNA family (Sau3A family) in human chromosomes: extrachromosomal DNA and DNA polymorphism. Proc. Natl Acad. Sci. USA, 83, 4665 4669.
    • (1986) Proc. Natl Acad. Sci. USA , vol.83 , pp. 4665-4669
    • Kiyama, R.1    Matsui, H.2    Oishi, M.3
  • 29
    • 0023660028 scopus 로고
    • A group of repetitive human DNA families that is characterized by extrachromosomal oligomers and restriction-fragment length polymorphism
    • Kiyama, R., Matsui, H., Okumura, K. Oishi, M. (1987) A group of repetitive human DNA families that is characterized by extrachromosomal oligomers and restriction-fragment length polymorphism. J. Mol. Biol. 193, 591 597.
    • (1987) J. Mol. Biol. , vol.193 , pp. 591-597
    • Kiyama, R.1    Matsui, H.2    Okumura, K.3    Oishi, M.4
  • 30
    • 0035740612 scopus 로고    scopus 로고
    • Chromatin elimination - An oddity or a common mechanism in differentiation and development?
    • Kloc, M. Zagrodzinska, B. (2001) Chromatin elimination - an oddity or a common mechanism in differentiation and development? Differentiation, 68, 84 91.
    • (2001) Differentiation , vol.68 , pp. 84-91
    • Kloc, M.1    Zagrodzinska, B.2
  • 31
    • 33846026008 scopus 로고    scopus 로고
    • Formation of non-random extrachromosomal elements during development, differentiation and oncogenesis
    • Kuttler, F. Mai, S. (2007) Formation of non-random extrachromosomal elements during development, differentiation and oncogenesis. Semin. Cancer Biol. 17, 56 64.
    • (2007) Semin. Cancer Biol. , vol.17 , pp. 56-64
    • Kuttler, F.1    Mai, S.2
  • 32
    • 33745744815 scopus 로고    scopus 로고
    • Telomerase- and capping-independent yeast survivors with alternate telomere states
    • Larrivee, M. Wellinger, R.J. (2006) Telomerase- and capping-independent yeast survivors with alternate telomere states. Nat. Cell Biol. 8, 741 747.
    • (2006) Nat. Cell Biol. , vol.8 , pp. 741-747
    • Larrivee, M.1    Wellinger, R.J.2
  • 34
    • 0346091244 scopus 로고    scopus 로고
    • Genome downsizing in polyploid plants
    • Leitch, I.J. Bennett, M.D. (2004) Genome downsizing in polyploid plants. Biol. J. Linn. Soc. 82, 651 663.
    • (2004) Biol. J. Linn. Soc. , vol.82 , pp. 651-663
    • Leitch, I.J.1    Bennett, M.D.2
  • 35
    • 0036918868 scopus 로고    scopus 로고
    • The impact of polyploidy on grass genome evolution
    • Levy, A.A. Feldman, M. (2002) The impact of polyploidy on grass genome evolution. Plant Physiol. 130, 1587 1593.
    • (2002) Plant Physiol. , vol.130 , pp. 1587-1593
    • Levy, A.A.1    Feldman, M.2
  • 36
    • 11144296219 scopus 로고    scopus 로고
    • Polyploidization-induced genome variation in Triticale
    • Ma, X.F., Fang, P. Gustafson, J.P. (2004) Polyploidization-induced genome variation in Triticale. Genome, 47, 839 848.
    • (2004) Genome , vol.47 , pp. 839-848
    • Ma, X.F.1    Fang, P.2    Gustafson, J.P.3
  • 37
    • 0023660409 scopus 로고
    • Some extrachromosomal circular DNAs from Drosophila embryos are homologous to tandemly repeated genes
    • Pont, G., Degroote, F. Picard, G. (1987) Some extrachromosomal circular DNAs from Drosophila embryos are homologous to tandemly repeated genes. J. Mol. Biol. 195, 447 451.
    • (1987) J. Mol. Biol. , vol.195 , pp. 447-451
    • Pont, G.1    Degroote, F.2    Picard, G.3
  • 38
    • 0032585645 scopus 로고    scopus 로고
    • Telomeric repeats on small polydisperse circular DNA (spcDNA) and genomic instability
    • Regev, A., Cohen, S., Cohen, E., Bar-Am, I. Lavi, S. (1998) Telomeric repeats on small polydisperse circular DNA (spcDNA) and genomic instability. Oncogene, 17, 3455 3461.
    • (1998) Oncogene , vol.17 , pp. 3455-3461
    • Regev, A.1    Cohen, S.2    Cohen, E.3    Bar-Am, I.4    Lavi, S.5
  • 39
    • 0000072952 scopus 로고
    • In situ hybridization confirms jumping nucleolus organizing regions in Allium
    • Schubert, I. Wobus, U. (1985) In situ hybridization confirms jumping nucleolus organizing regions in Allium. Chromosoma, 92, 143 148.
    • (1985) Chromosoma , vol.92 , pp. 143-148
    • Schubert, I.1    Wobus, U.2
  • 40
    • 0033804272 scopus 로고    scopus 로고
    • Ribosomal DNAs: An exception to the conservation of gene order in rice genomes
    • Shishido, R., Sano, Y. Fukui, K. (2000) Ribosomal DNAs: an exception to the conservation of gene order in rice genomes. Mol. Gen. Genet. 263, 586 591.
    • (2000) Mol. Gen. Genet. , vol.263 , pp. 586-591
    • Shishido, R.1    Sano, Y.2    Fukui, K.3
  • 41
    • 1842664385 scopus 로고    scopus 로고
    • Transgene intergration in plants: Poking or patching holes in promiscuous genomes?
    • Somers, D.A. Makarevitch, I. (2004) Transgene intergration in plants: poking or patching holes in promiscuous genomes? Curr. Opin. Biotechnol. 15, 126 131.
    • (2004) Curr. Opin. Biotechnol. , vol.15 , pp. 126-131
    • Somers, D.A.1    Makarevitch, I.2
  • 42
    • 0037112912 scopus 로고    scopus 로고
    • Variation in satellite DNA profiles-causes and effects
    • Ugarkovic, D. Plohl, M. (2002) Variation in satellite DNA profiles-causes and effects. EMBO J. 21, 5955 5959.
    • (2002) EMBO J. , vol.21 , pp. 5955-5959
    • Ugarkovic, D.1    Plohl, M.2
  • 43
    • 7044232011 scopus 로고    scopus 로고
    • Homologous recombination generates T-loop-sized deletions at human telomeres
    • Wang, R.C., Smogorzewska, A. de Lange, T. (2004) Homologous recombination generates T-loop-sized deletions at human telomeres. Cell, 119, 355 368.
    • (2004) Cell , vol.119 , pp. 355-368
    • Wang, R.C.1    Smogorzewska, A.2    De Lange, T.3
  • 44
    • 33847187005 scopus 로고    scopus 로고
    • Telomere rapid deletion regulates telomere length in Arabidopsis thaliana
    • Watson, J.M. Shippen, D.E. (2007) Telomere rapid deletion regulates telomere length in Arabidopsis thaliana. Mol. Cell. Biol. 27, 1706 1715.
    • (2007) Mol. Cell. Biol. , vol.27 , pp. 1706-1715
    • Watson, J.M.1    Shippen, D.E.2
  • 45
    • 84972884783 scopus 로고
    • Zein specific restriction enzyme fragments of maize DNA
    • Wienand, U. Feix, G. (1980) Zein specific restriction enzyme fragments of maize DNA. FEBS Lett. 116, 14 16.
    • (1980) FEBS Lett. , vol.116 , pp. 14-16
    • Wienand, U.1    Feix, G.2
  • 46
    • 34250862091 scopus 로고    scopus 로고
    • Ku suppresses formation of telomeric circles and alternative telomere lengthening in Arabidopsis
    • Zellinger, B., Akimcheva, S., Puizina, J., Schirato, M. Riha, K. (2007) Ku suppresses formation of telomeric circles and alternative telomere lengthening in Arabidopsis. Mol. Cell, 27, 163 169.
    • (2007) Mol. Cell , vol.27 , pp. 163-169
    • Zellinger, B.1    Akimcheva, S.2    Puizina, J.3    Schirato, M.4    Riha, K.5


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