Microsatellite DNA variation of the gametophyte clones isolated from introduced laminaria japonica (Phaeophyta) and L. longissima of China and varieties derived from them

Journal of Integrative Plant Biology

Volumn 50, Issue 3, 2008, Pages 352-359

  Li, Bing Jun ^a,c   Shi, Yuan Yuan ^a   Yang, Guan Pin ^a   Che, Shi ^b   Xiao jie, Li ^b   Yi zhou, Cong ^b  

^a OCEAN UNIVERSITY OF CHINA   (China)

^b Shandong Oriental Ocean Sci tech Co Ltd   (China)

^c YANTAI UNIVERSITY   (China)

Author keywords

Genetic differentiation; Genetic diversity; Laminaria japonica; Laminaria longissima; Microsatellite DNA marker

Indexed keywords

MICROSATELLITE DNA; PLANT DNA;

ALGA; CLONE; DNA; GAMETOPHYTE; GENETIC DIFFERENTIATION; GENETIC MARKER; GENETIC VARIATION;

ALLELE; ARTICLE; CELL CLONE; CHINA; CYTOLOGY; GENETIC MARKER; GENETIC VARIABILITY; GENETICS; GERM CELL; LAMINARIA; PHYLOGENY;

ALLELES; CHINA; CLONE CELLS; DNA, PLANT; GENETIC MARKERS; GERM CELLS; LAMINARIA; MICROSATELLITE REPEATS; PHYLOGENY; VARIATION (GENETICS);

LAMINARIA; LAMINARIA JAPONICA; LAMINARIA LONGISSIMA; PHAEOPHYCEAE;

EID: 40449105431     PISSN: 16729072     EISSN: 17447909     Source Type: Journal    
DOI: 10.1111/j.1744-7909.2007.00622.x     Document Type: Article

References (35)

1. Cornuet JM, Luikart G (1996). Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144, 2001-2014.
2. Evans LV (1965). Cytological studies in the Laminarials. Ann. Bot. 29, 541-542.
3. Fang TC, Ou YL, Cui JJ (1985). Breeding of hybrid Laminaria "Danza No. 10" - an application of the Laminaria haploid cell clones. J. Shandong Coll. Oceanol. 15, 64-72 (in Chinese with an English abstract).
4. Flint-Garcia SA, Thornsberry JM, Buckler IV ES (2003). Structure of linkage disequilibrium in plants. Annu. Rev. Plant Biol. 54, 357-374.
5. Gaggiotti OE, Lange O, Rassmann K, Glidden C (1999). A comparison of two indirect methods for estimating average levels of gene flow using microsatellite data. Mol. Ecol. 8, 1513-1520.
6. Goudet J (1995). F-STAT (v1.2): A computer program to calculate F-statistics. J. Hered. 86, 485-486.
7. He YJ, Zou YP, Wang XD, Zheng ZG, Zhang DM, Duan DL (2003). Assessing the germplasm of Laiminaria (Phaeophyceae) with random amplified polymorphic DNA (RAPD) method. Chin. J. Oceanol. Limnol. 21, 141-148 (in Chinese with an English abstract).
8. Kumar S, Tamura K, Nei M (2004). MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5, 150-163.
9. Li XJ, Cong YZ, Yang GP, Qu SC, Li ZL, Wang GW et al. (2006). Trait evaluation and trial cultivation of Dongfang No.2, the hybrid of a male gametophyte clone of Laminaria longissima (Laminariales, Phaeophyta) and a female one of L. japonica. J. Appl. Phycol. 19, 139-151.
10. Li Z, Zhang Q, Yang Y, Xie J, Luo S (2003a). Study on the technique of large-scale culture of the clone of Laminaria gametophyte. Shandong Fisheries 20, 1-3 (in Chinese with an English abstract).
11. Li D, Wu C, Liu W, Zang K, Xia J (2003b). A new technology of Laminaria japonica sporeling culture by the use of gametophyte clones. Acta Oceanol. Sin. 25, 141-145.
12. Li DP, Zhou ZG, Liu HH, Wu CY (1999). A new method of Laminaria japonica strain selection and sporeling raising by the use of gametophyte clones. Hydrobiologia 398/399, 473-476.
13. Odongo DO, Oura CAL, Spooner PR, Kiara H, Mburu OH, Hanotte OH et al. (2006). Linkage disequilibrium between alleles at highly polymorphic mini- and micro-satellite loci of Theileria parva isolated from cattle in three regions of Kenya. Int. J. Parasitol. 36, 937-946.
14. Patwary MU, Van Der Meer JP (1994). Application of RAPD markers in an examination of heterosis in Gelidium vagum (RHODOPHYTA). J. Phycol. 30, 91-97.
15. Pritchard JK, Stephens M, Donnelly P (2000). Inference of population structure from multilocus genotype data. Genetics 155, 945-959.
16. Raymond M, Rousset F (1995). GENEPOP (v 1.2): Population genetics software for exact tests and ecumenicism. J. Hered. 86, 248-249.
17. Rice WR (1989). Analyzing tables of statistical tests. Evolution 43, 223-225.
18. Schneider S, Roessli D, Excoffier L (2000). ARLEQUIN, Version 2.0: A Software for Population Genetic Data Analysis. Geneva: University of Geneva.
19. Shi CJ, Hu ZM, He YJ, Zou YP, Zhang DM, Duan DL (2005). Identification and assessing the cultivars of Laminaria Lamx. (Phaeophyceae) with molecular markers. J. Integr. Plant Biol. 47, 283-291.
20. Tom DI (1992). North Pacific and North Atlantic digitata Laminaria species (Phaeophyta) hybridization experiment and temperature response. Phycologia 31, 147-163.
21. Tseng CK (2001). Algal biotechnology industries and research activities in China. J. Appl. Phycol. 13, 375-380.
22. Tseng CK, Sun KY, Wu CY (1955). On the cultivation of Haidai (Laminaria japonica Aresch) by summering young sporophytes at low temperature. Acta Bot. Sin. 4, 255-264 (in Chinese with an English abstract).
23. Tseng CK, Wang S, Liu SJ, Guo XK, Zhang DM, Miao GR (1984). Cultivation of Microalgae. Shanghai Science and Technology Press, Shanghai, China. pp. 87-92 (in Chinese).
24. Varela-Alvarez E, Andreakis N, Lago-Leston A, Pearson GA, Serrao EA, Procaccini G et al. (2006). Genomic DNA isolation from green and brown algae (Caulerpales and Fucales) for microsatellite library construction. J. Phycol. 42, 741-745.
25. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Homes M et al. (1995). AFLP: A new technique for DNA fingerprinting. Nucleic Acids Res. 23, 4407-4414.
26. Wang GG, Li YH, Xia P (2005b). A simple method for DNA extraction from sporophyte in the brown alga Laminaria japonica. J. Appl. Phycol. 17, 75-79.
27. Wang XL, Liu CL, Li XJ (2005a). Assessment of genetic diversities of selected Laminaria (Laminariales, Phaeophyta) gametophytes by inter-simple sequence repeat analysis. J. Integr. Plant Biol. 47, 753-758.
28. Wang XL, Yang YX, Cong YZ, Duan DL (2004). DNA fingerprinting of selected Laminaria (Phaeophyta) gametophytes by RAPD markers. Aquaculture 238, 143-153.
29. Wang SJ (1994). Seaweed Biotechnology. Shanghai Science and Technology Press. Shanghai, China. pp. 104-111 (in Chinese).
30. Wu CY, Lin GH (1987). Progress in the genetics and breeding of economic seaweeds in China. Hydrobiologia 151/152, 57-61.
31. Yeh FC, Yang R, Boyle TJ, Ye Z, Xiyan JM (2000). POPGENE 32, Microsoft Windows-Based Freeware for Population Genetic Analysis. Molecular Biology and Biotechnology Centre, University of Alberta, Edmonton, Canada.
32. Zane L, Bargelloni L, Patarnello T (2002). Strategies for microsatellite isolation: A review. Mol. Ecol. 11, 1-16.
33. Zemke-White WL, Ohno M (1999). World seaweed utilization: An end-of-century summary. J. Appl. Phycol. 11, 369-376.
34. Zhang QS, Tang XX, Cong YZ, Qu SC, Luo SJ, Yang GP (2007). Breeding of an elite Laminaria variety 90-1 through inter-specific gametophyte crossing. J. Appl. Phycol. 19, 303-311.
35. Zhang QS, Tang XX, Zhang PY, Qu SC, Li XJ (2005). Study on seedling collection technology in the production of Laminaria gametophyte clone. High Technol. Lett. 15, 89-92 (in Chinese with an English abstract).