FISH mapping and identification of Zhikong scallop (Chlamys farreri) chromosomes

Marine Biotechnology

Volumn 10, Issue 2, 2008, Pages 151-157

  Zhang, Lingling ^a   Bao, Zhenmin ^a   Wang, Shi ^a   Hu, Xiaoli ^a   Hu, Jingjie ^a  

^a OCEAN UNIVERSITY OF CHINA   (China)

Author keywords

Chlamys farreri; Chromosome identification; FISH; Fosmid; Zhikong scallop

Indexed keywords

CHLAMYS FARRERI; CHROMOSOME IDENTIFICATION; ZHIKONG SCALLOP;

CLONING; CYTOLOGY; DNA; FLUORESCENCE; GENE EXPRESSION;

CHROMOSOMES;

BIVALVE; CHROMOSOME; CYTOGENETICS; FLUORESCENCE; HYBRIDIZATION; IDENTIFICATION METHOD; KARYOTYPE; MAPPING;

ANIMAL; ANIMAL DISEASE; ARTICLE; CHROMOSOME; CHROMOSOME MAP; FLUORESCENCE IN SITU HYBRIDIZATION; GENETICS; KARYOTYPING; METABOLISM; METAPHASE; METHODOLOGY; SCALLOP;

ANIMALS; CHROMOSOME MAPPING; CHROMOSOMES; IN SITU HYBRIDIZATION, FLUORESCENCE; KARYOTYPING; METAPHASE; PECTINIDAE;

CHLAMYS FARRERI; PECTINIDAE;

EID: 40449102215     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-007-9045-x     Document Type: Article

References (29)

1. Benson G (1999) Tandem repeats finder: a program to analyzeDNAsequences. Nucleic Acids Res 27, 573-580
2. Eirín-López JM, González-Tizón AM, Martínez A, Méndez J (2002) Molecular and evolutionary analysis of mussel histone genes (Mytilus spp): possible evidence of an Borphon origin" for H1 histone genes. J Mol Evol 55, 272-283
3. Eirín-López JM, Fernanda Ruiz M, González- Tizón AM, Martínez A, Sánchez L, Méndez J (2004) Molecular evolutionary characterization of the mussel Mytilus histone multigene family: first record of a tandemly repeated unit of five histone genes containing an H1 subtype with Borphon" features. J Mol Evol 58, 131-144
4. Gajardo G, Parraguez M, Colihueque N (2002) Karyotype analysis and chromosome banding of the Chilean- Peruvian scallop Argopecten purpuratus (Lamarck, 1819). J Shellfish Res 21, 585-590
5. Gonzáles-Tizón A, Martínez-Lage A, Mariñas L, Feire R, Cornudella L, Méndez Y (1998) Cytogenetic characterization of Donax trunculus (Mollusca, Bivalvia) 13th International Chromosome Conference [abstract]. Cytogenet Cell Genet 81, 109
6. Guo X, Allen SK (1997) Fluorescence in situ hybridization of the vertebrate telomere sequence to chromosome ends of the Pacific oyster, Crassostrea gigas Thunberg. J Shellfish Res 16, 87-89
7. Huang X, Bao Z, Bi K, Hu J, Zhang C, Zhang Q, Hu X (2006) Chromosomal localization of the major ribosomal RNA genes in scallop Chlamys farreri. Acta Oceanol Sin 25, 108-115
8. InsuaA, López-PiñónMJ,Méndez J (1998) Characterization of Aequipecten opercularis (Bivalvia: Pectinidae) chromosomes by different staining techniques and fluorescent in situ hybridization. Genes Genet Syst 73, 193-200
9. Kim JS, Klein PE, Klein RR, Price HJ, Mullet JE, Stelly DM (2005) Chromosome identification and nomenclature of sorghum bicolor. Genetics 169, 1169-1173
10. Li L, Xiang J, Liu X, Zhang Y, Dong B, Zhang X (2005) Construction of AFLP-based genetic linkage map for Zhikong scallop, Chlamys farreri Jones et Preston and mapping of sex-linked markers. Aquaculture 245, 63-73
11. Li C, Song L, Zhao J, Zou H, Su J, Zhang H (2006) Genomic organization, nucleotide sequence analysis of the core histone genes cluster in Chlamys farreri and molecular evolution assessment of the H2A and H2B. DNA Seq 17, 440-451
12. Nagashima K, Sato M, Kawamata K, Nakamura A, Ohta T (2005) Genetic structure of Japanese scallop population in Hokkaido, analyzed by mitochondrial haplotype distribution. Mar Biotechnol 7, 1-10
13. Qin Y, Liu X, Zhang H, Zhang G, Guo X (2007) Identification and mapping of amplified fragment length polymorphism markers linked to shell color in Bay scallop, Argopecten irradians irradians (Lamarck, 1819). Mar Biotechnol 9, 66-73
14. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning: A Laboratory Manual, 2nd ed. (Cold Spring Harbor, NY: Cold Spring Harbor Laboratory)
15. Sato M, Kawamata K, Zaslavskaya N, Nakamura A, Ohta T, Nishikiori T, Brykov V, Nagashima K (2005) Development of microsatellite markers for Japanese scallop (Mizuhopecten yessoensis) and their application to a population genetic study. Mar Biotechnol 7, 713-728
16. Song L, Xu W, Li C, Li H, Wu L, Xiang J, Guo X (2006) Development of expressed sequence tags from the bay scallop, Argopecten irradians irradians. Mar Biotechnol 8, 161-169
17. Wang Y, Guo X (2004) Chromosomal rearrangement in Pectinidae revealed by rRNA loci and implications for bivalve evolution. Biol Bull 207, 247-256
18. Wang Y, Xu Z, Guo X (2001) A centromeric satellite sequence in the Pacific oyster (Crassostrea gigas Thunberg) identified by fluorescence in situ hybridization. Mar Biotechnol 3, 486-492
19. Wang S, Bao Z, Pan J, Zhang L, Yao B, Zhan A, Bi K, Zhang Q (2004) AFLP linkage map of an intraspecific cross in Chlamys farreri. J Shellfish Res 23, 491-499
20. Wang L, Song L, Chang Y, Xu W, Ni D, Guo X (2005a) A preliminary genetic map of Zhikong scallop (Chlamys farreri Jones et Preston 1904). Aquac Res 36, 643-653
21. Wang Y, Xu Z, Pierce JC, Guo X (2005b) Characterization of eastern oyster (Crassostrea virginica Gmelin) chromosomes by fluorescence in situ hybridization with bacteriophage P1 clones. Mar Biotechnol 7, 207-214
22. Wang S, Bao Z, Li N, Zhang L, Hu J (2007) Analysis of the secondary structure of ITS1 in Pectinidae: implications for phylogenetic reconstruction and structural evolution. Mar Biotechnol 9, 231-242
23. Xu Z, Guo X, Gaffney PM, Pierce JC (2001) Chromosomal location of themajor ribosomalRNAgenes in Crassostrea virginica and Crassostrea gigas. Veliger 44, 86-90
24. Yoshido A, Bando H, Yasukochi Y, Sahara K (2005) The Bombyx mori karyotype and the assignment of linkage groups. Genetics 170, 675-685
25. Zhang QY, Yu G, Cooper RK, Tiersch TR (1999) Chromosomal location by fluorescence in situ hybridization of the 28S ribosomal RNA gene of the eastern oyster. J Shellfish Res 18, 431-435
26. Zhang L, Bao Z, Cheng J, Li H, Huang X, Wang S, Zhang C, Hu, J (2007a) Fosmid library construction and initial analysis of end sequences in Zhikong scallop (Chlamys farreri). Mar Biotechnol [DOI 101007/s10126-007-9014-4]
27. Zhang L, Bao Z, Wang S, Huang X, Hu J (2007b) Chromosome rearrangements in Pectinidae (Bivalvia: Pteriomorphia) implied based on chromosomal localization of histone H3 gene in four scallops. Genetica 130, 193-198
28. Zhang L, Chen C, Cheng J, Wang S, Hu X, Hu J, Bao, Z (2007c) Initial analysis of tandemly repetitive sequences in the genome of Zhikong scallop (Chlamys farreri Jones et Preston) DNA Seq [DOI 101080/10425170701462316]
29. Zwick MS, Hanson RE, McKnight TD, Islam-Faridi MN, Stelly DM, Wing RA, Price HJ (1997) A rapid procedure for the isolation of C0t-1 DNA from plants. Genome 40, 138-142