Comamonas composti sp. nov., isolated from food waste compost

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 1, 2008, Pages 251-256

  Young, Chiu Chung ^a   Chou, Jui Hsing ^a   Arun, A B ^a   Yen, Wen Shao ^a   Sheu, Shih Yi ^b   Shen, Fo Ting ^a   Lai, Wai An ^a   Rekha, P D ^a   Chen, Wen Ming ^b  

^a NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

^b NATIONAL KAOHSIUNG UNIVERSITY OF APPLIED SCIENCES   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CYTOSINE; GENOMIC DNA; GUANINE; RNA 16S; FATTY ACID;

ARTICLE; BACTERIAL CELL; BACTERIAL STRAIN; BACTERIUM ISOLATE; BIOCHEMISTRY; COMAMONAS; COMAMONAS COMPOSTI; COMAMONAS KOREENSIS; COMAMONAS ODONTOTERMITIS; COMAMONAS TERRIGENA; COMAMONAS TESTOSTERONI; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; GENOTYPE; GENUS; GRAM NEGATIVE BACTERIUM; LIPID COMPOSITION; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; TAXONOMY; BACTERIUM IDENTIFICATION; CLASSIFICATION; DNA SEQUENCE; FOOD CONTROL; GENETICS; ISOLATION AND PURIFICATION; METHODOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PHYSIOLOGY; RNA GENE; SPECIES DIFFERENCE; TAIWAN; WASTE DISPOSAL;

BACTERIA (MICROORGANISMS); COMAMONAS; COMAMONAS KOREENSIS; COMAMONAS TERRIGENA; COMAMONAS TESTOSTERONI; NEGIBACTERIA;

BACTERIAL TYPING TECHNIQUES; COMAMONAS; DNA, BACTERIAL; FATTY ACIDS; FOOD MICROBIOLOGY; GENES, RRNA; GENOTYPE; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; REFUSE DISPOSAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; TAIWAN;

EID: 40449100127     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65277-0     Document Type: Article

References (22)

1. Bauer, A. W., Kirby, W. M. M., Sherris, J. C. & Turck, M. (1966). Antibiotic susceptibility testing by a standardized single disk method. Am J Clin Pathol 45, 493-496.
2. Chang, Y. H., Han, J. I., Chun, J., Lee, K. C., Rhee, M. S., Kim, Y. B. & Bae, K. S. (2002). Comamonas koreensis sp. nov., a non-motile species from wetland in Woopo, Korea. Int J Syst Evol Microbiol 52, 377-381.
3. Chen, W. M., Laevens, S., Lee, T. M., Coenye, T., De Vos, P., Mergeay, M. & Vandamme, P. (2001). Ralstonia taiwanensis sp. nov., isolated from root nodules of Mimosa species and sputum of a cystic fibrosis patient. Int J Syst Evol Microbiol 51, 1729-1735.
4. Chou, J.-H., Sheu, S.-Y., Lin, K.-Y., Chen, W.-M., Arun, A. B. & Young, C.-C. (2007). Comamonas odontotermitis sp. nov., isolated from the gut of the termite Odontotermes formosanus. Int J Syst Evol Microbiol 57, 887-891.
5. Chung, Y. C., Kobayashi, T., Kanai, H., Akiba, T. & Kudo, T. (1995). Purification and properties of extracellular amylase from the hyperthermophilic archeon Thermococcus profundus DT5432. Appl Environ Microbiol 61, 1502-1506.
6. De Vos, P., Kersters, K., Falsen, E., Pot, B., Gillis, M., Segers, P. & De Ley, J. (1985). Comamonas Davis and Park 1962, gen. nov., nom. rev. emend., and Comamonas terrigena Hugh 1962, sp. nov., nom. rev. Int J Syst Bacteriol 35, 443-453.
7. Etchebehere, C., Errazquin, M. I., Dabert, P., Moletta, R. & Muxi, L. (2001). Comamonas nitrativorans sp. nov., a novel denitrifier isolated from a denitrifying reactor treating landfill leachate. Int J Syst Evol Microbiol 51, 977-983.
8. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
9. GCG (1995). Wisconsin Package Version 8.1 Program Manual. Madison, WI: Genetics Computer Group.
10. Gumaelius, L., Magnusson, G., Pettersson, B. & Dalhammar, G. (2001). Comamonas denitrificans sp. nov., an efficient denitrifying bacterium isolated from activated sludge. Int J Syst Evol Microbiol 51, 999-1006.
11. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
12. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
13. Kluge, A. G. & Farris, F. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
14. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
15. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
16. Powers, E M. (1995). Efficacy of the Ryu non-staining KOH technique for rapidly determining gram reactions of food-borne and waterborne bacteria and yeasts. Appl Environ Microbiol 6, 3756-3758.
17. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
18. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
19. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
20. Tago, Y. & Yokota, A. (2004). Comamonas badia sp. nov., a floc-forming bacterium isolated from activated sludge. J Gen Appl Microbiol 50, 243-248.
21. Wauters, G., De Baere, T., Willems, A., Falsen, E. & Vaneechoutte, M. (2003). Description of Comamonas aquatica comb. nov. and Comamonas kerstersii sp. nov. for two subgroups of Comamonas terrigena and emended description of Comamonas terrigena. Int J Syst Evol Microbiol 53, 859-862.
22. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.