Paludibacterium yonneupense gen. nov., sp. nov., isolated from a wetland, Yongneup, in Korea

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 1, 2008, Pages 190-194

  Kwon, Soon Wo ^a   Kim, Byung Yong ^a   Kim, Wan Gyu ^b   Yoo, Kwan Hee ^c   Yoo, Seung Hee ^a   Son, Jung A ^b   Weon, Hang Yeon ^b  

^a National Institute of Agricultural Science   (South Korea)

^b National Institute of Animal Science   (South Korea)

^c Sangji University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CYTOSINE; FATTY ACID; GUANINE; ISOPRENOID; QUINONE DERIVATIVE; RNA 16S; UBIQUINONE;

ANAEROBIC BACTERIUM; AQUASPIRILLUM SERPENS; AQUITALEA MAGNUSONII; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BETAPROTEOBACTERIA; CHROMOBACTERIUM; CONTROLLED STUDY; FLAGELLUM; GRAM NEGATIVE BACTERIUM; GULBENKIANIA MOBILIS; KOREA; NEISSERIACEAE; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PALUDIBACTERIUM YONGNEUPENSE; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; TAXONOMY; WETLAND; BACTERIUM IDENTIFICATION; CHEMISTRY; CLASSIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; PHENOTYPE; RNA GENE; SPECIES DIFFERENCE;

AQUASPIRILLUM SERPENS; BACTERIA (MICROORGANISMS); BETAPROTEOBACTERIA; CHROMOBACTERIUM; NEGIBACTERIA; NEISSERIACEAE;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; BETAPROTEOBACTERIA; DNA, BACTERIAL; FATTY ACIDS; GENES, RRNA; KOREA; MOLECULAR SEQUENCE DATA; PHENOTYPE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; WETLANDS;

EID: 40449083959     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64831-0     Document Type: Article

References (20)

1. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A. & Struhl, K. (editors) (1987). Current Protocols in Molecular Biology. New York: Wiley.
2. Breznak, J. A. & Costilow, R. N. (1994). Physicochemical factors in growth. In Methods for General and Molecular Bacteriology, pp. 137-154. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
3. Chern, L.-L., Stackebrandt, E., Lee, S.-F., Lee, F.-L., Chen, J.-K. & Fu, H.-M. (2004). Chitinibacter tainanensis gen. nov., sp. nov., a chitin-degrading aerobe from soil in Taiwan. Int J Syst Evol Microbiol 54, 1387-1391.
4. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
5. AL. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), pp. 824-827. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
6. Groth, I., Schumann, P., Weiss, N., Martin, K. & Rainey, F. A. (1996). Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46, 234-239.
7. VP. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), pp. 858-859. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
8. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform 5, 150-163.
9. Lau, H.-T., Faryna, J. & Triplett, E. W. (2006). Aquitalea magnusonii gen. nov., sp. nov., a novel Gram-negative bacterium isolated from a humic lake. Int J Syst Evol Microbiol 56, 867-871.
10. Martin, P. A. W., Gundersen-Rindal, D., Blackburn, M. & Buyer, J. (2007). Chromobacterium subtsugae sp. nov., a betaproteobacterium toxic to Colorado potato beetle and other insect pests. Int J Syst Evol Microbiol 57, 993-999.
11. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
12. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
13. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
14. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequencing weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
15. AL emend. Dewhirst, Paster and Bright 1989, 265. In Bergey's Manual of Systematic Bacteriology, 2nd edn; vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), pp. 775-863. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
16. Vaz-Moreira, I., Nobre, M. F., Nunes, O. C. & Manaia, C. M. (2007). Gulbenkiania mobilis gen. nov., sp. nov., isolated from treated municipal wastewater. Int J Syst Evol Microbiol 57, 1108-1112.
17. Vela, A. I., Collins, M. D., Lawson, P. A., García, N., Domínguez, L. & Fernández-Garayzábal, J. F. (2005). Uruburuella suis gen. nov., sp. nov., isolated from clinical specimens of pigs. Int J Syst Evol Microbiol 55, 643-647.
18. Weisburg, W. G., Barns, S. M., Pelletier, D. A. & Lane, D. J. (1991). 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697-703.
19. Xie, C. H. & Yokota, A. (2005). Phylogenetic analysis of Alysiella and related genera of Neisseriaceae: proposal of Alysiella crassa comb. nov., Conchiformibium steedae gen. nov., comb. nov., Conchiformibium kuhniae sp. nov. and Bergeriella denitrificans gen. nov., comb. nov. J Gen Appl Microbiol 51, 1-10.
20. Yang, H.-C., Im, W.-T., An, D.-S., Park, W.-S., Kim, I. S. & Lee, S.-T. (2005). Silvimonas terrae gen. nov., sp. nov., a novel chitin-degrading facultative anaerobe belonging to the 'Betaproteobacteria'. Int J Syst Evol Microbiol 55, 2329-2332.