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Volumn 2, Issue 2, 2004, Pages 333-342

Clustering of amino acids for protein secondary structure prediction

Author keywords

Clustering of amino acids; Prediction of protein secondary structure

Indexed keywords

AMINO ACID; MEMBRANE PROTEIN;

EID: 4043080770     PISSN: 02197200     EISSN: None     Source Type: Journal    
DOI: 10.1142/S0219720004000582     Document Type: Article
Times cited : (7)

References (20)
  • 1
    • 0015967881 scopus 로고
    • "Conformational parameters for amino acids in helical, betasheet, and random coil regions calculated from proteins"
    • P. Y. Chou and G. D. Fasman, "Conformational parameters for amino acids in helical, betasheet, and random coil regions calculated from proteins", Biochemistry 13(2), 211-222 (1974a).
    • (1974) Biochemistry , vol.13 , Issue.2 , pp. 211-222
    • Chou, P.Y.1    Fasman, G.D.2
  • 2
    • 0015987426 scopus 로고
    • "Prediction of protein conformation"
    • P. Y. Chou and G. D. Fasman, "Prediction of protein conformation", Biochemistry 13(2), 222-245 (1974b).
    • (1974) Biochemistry , vol.13 , Issue.2 , pp. 222-245
    • Chou, P.Y.1    Fasman, G.D.2
  • 3
    • 0017873321 scopus 로고
    • "Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins"
    • J. Garnier, D. Osguthorpe and B. Robson, "Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins", J. Mol. Biol. 120, 97 120 (1978).
    • (1978) J. Mol. Biol. , vol.120 , pp. 97-120
    • Garnier, J.1    Osguthorpe, D.2    Robson, B.3
  • 4
    • 0023555768 scopus 로고
    • "Further developments of protein secondary structure prediction using information theory. Newparameters and consideration of residue pairs"
    • J. F. Gibrat, J. Garnier and B. Robson, "Further developments of protein secondary structure prediction using information theory. Newparameters and consideration of residue pairs", J. Mol. Biol. 198, 425-443 (1987).
    • (1987) J. Mol. Biol. , vol.198 , pp. 425-443
    • Gibrat, J.F.1    Garnier, J.2    Robson, B.3
  • 5
    • 0029884694 scopus 로고    scopus 로고
    • "GOR method for predicting protein secondary structure from amino acid sequence"
    • J. Garnier, J. F. Gibrat and B. Robson, "GOR method for predicting protein secondary structure from amino acid sequence", Methods in Enzymology 266, 540-553 (1996).
    • (1996) Methods in Enzymology , vol.266 , pp. 540-553
    • Garnier, J.1    Gibrat, J.F.2    Robson, B.3
  • 6
    • 0024610919 scopus 로고
    • "A tutorial on hidden Markov models and selected applications in speech recognition"
    • L. R. Rabiner, "A tutorial on hidden Markov models and selected applications in speech recognition", Proc. IEEE 77(2), 257-286 (1989).
    • (1989) Proc. IEEE , vol.77 , Issue.2 , pp. 257-286
    • Rabiner, L.R.1
  • 7
    • 0027174134 scopus 로고
    • "Prediction of protein secondary structure by the hidden Markov model"
    • K. Asai, S. Hayamizu and K. Handa, "Prediction of protein secondary structure by the hidden Markov model", Bioinformatics 9, 141-146 (1993).
    • (1993) Bioinformatics , vol.9 , pp. 141-146
    • Asai, K.1    Hayamizu, S.2    Handa, K.3
  • 8
    • 4043060292 scopus 로고
    • Stultz et al. (1993) (pg. 1).
    • (1993) , pp. 1
    • Stultz, A.1
  • 10
    • 0033405214 scopus 로고    scopus 로고
    • "Hidden Markov model approach for identifying the modular framework of the protein backbone"
    • A. C. Camproux, P. Tuffery, J. P. Chevrolat, J. F. Boisvieux and S. Hazout, "Hidden Markov model approach for identifying the modular framework of the protein backbone", Protein Eng. 12(12), 1063-1073 (1999).
    • (1999) Protein Eng. , vol.12 , Issue.12 , pp. 1063-1073
    • Camproux, A.C.1    Tuffery, P.2    Chevrolat, J.P.3    Boisvieux, J.F.4    Hazout, S.5
  • 11
    • 0034047548 scopus 로고    scopus 로고
    • "Bayesian segmentation of protein secondary structure"
    • S. C. Schmidler, J. S. Liu and D. L. Brutlag, "Bayesian segmentation of protein secondary structure", J. Comp. Biol. 7(1/2), 233-248 (2000).
    • (2000) J. Comp. Biol. , vol.7 , Issue.1-2 , pp. 233-248
    • Schmidler, S.C.1    Liu, J.S.2    Brutlag, D.L.3
  • 12
    • 0020997912 scopus 로고
    • "Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features"
    • W. Kabsch and C. Sander, "Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features", Biopolymers 22, 2577-2637 (1983).
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 13
    • 0028205447 scopus 로고
    • "Enlarged representative set of protein structures"
    • U. Hobohm and C. Sander, "Enlarged representative set of protein structures", Protein Science 3, 522-524 (1994).
    • (1994) Protein Science , vol.3 , pp. 522-524
    • Hobohm, U.1    Sander, C.2
  • 14
    • 0027291015 scopus 로고
    • "Prediction of protein secondary structure at better than 70% accuracy"
    • B. Rost and C. Sander, "Prediction of protein secondary structure at better than 70% accuracy", J. Mol. Biol. 232, 584-599 (1993).
    • (1993) J. Mol. Biol. , vol.232 , pp. 584-599
    • Rost, B.1    Sander, C.2
  • 15
    • 0028961335 scopus 로고
    • "SCOP: A structural classification of proteins database for the investigation of sequences and structures"
    • A. G. Murzin, S. E. Brenner, T. Hubbard and C. Chothia, "SCOP: A structural classification of proteins database for the investigation of sequences and structures", J. Mol. Biol. 247, 536-540 (1995).
    • (1995) J. Mol. Biol. , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 16
    • 0031841279 scopus 로고    scopus 로고
    • "The HSSP database of protein structure-sequence alignments and family profiles"
    • C. Dodge, R. Schneider and C. Sander, "The HSSP database of protein structure-sequence alignments and family profiles", Nucleic Acids Res 26, 313-315 (1998).
    • (1998) Nucleic Acids Res , vol.26 , pp. 313-315
    • Dodge, C.1    Schneider, R.2    Sander, C.3
  • 17
    • 4043156610 scopus 로고    scopus 로고
    • CASP4
    • CASP4, http://predictioncenter.llnl.gov/casp4/ (2000).
    • (2000)
  • 18
    • 0025908768 scopus 로고
    • "Method of calculation of discrete secondary structures in globular proteins"
    • V. V. Solovyev and A. A. Salamov, "Method of calculation of discrete secondary structures in globular proteins", Mol. Biol. 25(3), 810-824 (1991).
    • (1991) Mol. Biol. , vol.25 , Issue.3 , pp. 810-824
    • Solovyev, V.V.1    Salamov, A.A.2
  • 19
    • 0028605560 scopus 로고
    • "Predicting alpha-helix and beta-strand segments of globular protein"
    • V. V. Solovyev and A. A. Salamov, "Predicting alpha-helix and beta-strand segments of globular protein", Comput. Appl. Biosci. 10(6), 661-669 (1994).
    • (1994) Comput. Appl. Biosci. , vol.10 , Issue.6 , pp. 661-669
    • Solovyev, V.V.1    Salamov, A.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.