-
1
-
-
0031851758
-
Architecture of nonspecific protein-DNA interactions in the Sso7d-DNA complex
-
Agback P, Baumann H, Knapp S, Ladenstein R, Hard T (1998) Architecture of nonspecific protein-DNA interactions in the Sso7d-DNA complex. Nat Struct Biol 5:579-584
-
(1998)
Nat Struct Biol
, vol.5
, pp. 579-584
-
-
Agback, P.1
Baumann, H.2
Knapp, S.3
Ladenstein, R.4
Hard, T.5
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
0028533719
-
Solution structure and DNA-binding properties of a thermostable protein from the archaeon Sulfolobus solfataricus
-
Baumann H, Knapp S, Lundback T, Ladenstein R, Hard T (1994) Solution structure and DNA-binding properties of a thermostable protein from the archaeon Sulfolobus solfataricus. Nat Struct Biol 1:808-819
-
(1994)
Nat Struct Biol
, vol.1
, pp. 808-819
-
-
Baumann, H.1
Knapp, S.2
Lundback, T.3
Ladenstein, R.4
Hard, T.5
-
4
-
-
21844477811
-
The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota
-
Chen L, Brugger K, Skovgaard M, Redder P, She Q, Torarinsson E, Greve B, Awayez M, Zibat A, Klenk HP, Garrett RA (2005) The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota. J Bacteriol 187:4992-4999
-
(2005)
J Bacteriol
, vol.187
, pp. 4992-4999
-
-
Chen, L.1
Brugger, K.2
Skovgaard, M.3
Redder, P.4
She, Q.5
Torarinsson, E.6
Greve, B.7
Awayez, M.8
Zibat, A.9
Klenk, H.P.10
Garrett, R.A.11
-
5
-
-
0023759962
-
Isolation, characterization and microsequence analysis of a small basic methylated DNA-binding protein from the archaebacterium, Sulfolobus solfataricus
-
Choli T, Henning P, Wittmann-Liebold B, Reinhardt R (1988a) Isolation, characterization and microsequence analysis of a small basic methylated DNA-binding protein from the archaebacterium, Sulfolobus solfataricus. Biochim Biophys Acta 950:193-203
-
(1988)
Biochim Biophys Acta
, vol.950
, pp. 193-203
-
-
Choli, T.1
Henning, P.2
Wittmann-Liebold, B.3
Reinhardt, R.4
-
6
-
-
0023921980
-
Microsequence analysis of DNA-binding proteins 7a, 7b, and 7e from the archaebacterium Sulfolobus acidocaldarius
-
Choli T, Wittmann-Liebold B, Reinhardt R (1988b) Microsequence analysis of DNA-binding proteins 7a, 7b, and 7e from the archaebacterium Sulfolobus acidocaldarius. J Biol Chem 263:7087-7093
-
(1988)
J Biol Chem
, vol.263
, pp. 7087-7093
-
-
Choli, T.1
Wittmann-Liebold, B.2
Reinhardt, R.3
-
7
-
-
0028839434
-
Solution structure of the DNA-binding protein Sac7d from the hyperthermophile Sulfolobus acidocaldarius
-
Edmondson SP, Qiu L, Shriver JW (1995) Solution structure of the DNA-binding protein Sac7d from the hyperthermophile Sulfolobus acidocaldarius. Biochemistry 34:13289-13304
-
(1995)
Biochemistry
, vol.34
, pp. 13289-13304
-
-
Edmondson, S.P.1
Qiu, L.2
Shriver, J.W.3
-
8
-
-
0037154277
-
Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum
-
Fitz-Gibbon ST, Ladner H, Kim UJ, Stetter KO, Simon MI, Miller JH (2002) Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum. Proc Natl Acad Sci USA 99:984-989
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 984-989
-
-
Fitz-Gibbon, S.T.1
Ladner, H.2
Kim, U.J.3
Stetter, K.O.4
Simon, M.I.5
Miller, J.H.6
-
9
-
-
0031718377
-
The crystal structure of the hyperthermophile chromosomal protein Sso7d bound to DNA
-
Gao YG, Su SY, Robinson H, Padmanabhan S, Lim L, McCrary BS, Edmondson SP, Shriver JW, Wang AH (1998) The crystal structure of the hyperthermophile chromosomal protein Sso7d bound to DNA. Nat Struct Biol 5:782-786
-
(1998)
Nat Struct Biol
, vol.5
, pp. 782-786
-
-
Gao, Y.G.1
Su, S.Y.2
Robinson, H.3
Padmanabhan, S.4
Lim, L.5
McCrary, B.S.6
Edmondson, S.P.7
Shriver, J.W.8
Wang, A.H.9
-
11
-
-
0030012909
-
Histones and chromatin structure in hyperthermophilic Archaea
-
Grayling RA, Sandman K, Reeve JN (1996) Histones and chromatin structure in hyperthermophilic Archaea. FEMS Microbiol Rev 18:203-213
-
(1996)
FEMS Microbiol Rev
, vol.18
, pp. 203-213
-
-
Grayling, R.A.1
Sandman, K.2
Reeve, J.N.3
-
12
-
-
0022478821
-
Ribosomal and DNA binding proteins of the thermophilic archaebacterium Sulfolobus acidocaldarius
-
Grote M, Dijk J, Reinhardt R (1986) Ribosomal and DNA binding proteins of the thermophilic archaebacterium Sulfolobus acidocaldarius. Biochim Biophys Acta 873:405-413
-
(1986)
Biochim Biophys Acta
, vol.873
, pp. 405-413
-
-
Grote, M.1
Dijk, J.2
Reinhardt, R.3
-
13
-
-
0032702275
-
Affinity analysis of non-steady-state data obtained under mass transport limited conditions using BIAcore technology
-
Karlsson R (1999) Affinity analysis of non-steady-state data obtained under mass transport limited conditions using BIAcore technology. J Mol Recognit 12:285-292
-
(1999)
J Mol Recognit
, vol.12
, pp. 285-292
-
-
Karlsson, R.1
-
14
-
-
0033616977
-
Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1
-
Kawarabayasi Y, Hino Y, Horikawa H, Yamazaki S, Haikawa Y, Jin-no K, Takahashi M, Sekine M, Baba S, Ankai A, Kosugi H, Hosoyama A, Fukui S, Nagai Y, Nishijima K, Nakazawa H, Takamiya M, Masuda S, Funahashi T, Tanaka T, Kudoh Y, Yamazaki J, Kushida N, Oguchi A, Kikuchi H (1999) Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1. DNA Res 6:83-52
-
(1999)
DNA Res
, vol.6
, pp. 83-52
-
-
Kawarabayasi, Y.1
Hino, Y.2
Horikawa, H.3
Yamazaki, S.4
Haikawa, Y.5
Jin-No, K.6
Takahashi, M.7
Sekine, M.8
Baba, S.9
Ankai, A.10
Kosugi, H.11
Hosoyama, A.12
Fukui, S.13
Nagai, Y.14
Nishijima, K.15
Nakazawa, H.16
Takamiya, M.17
Masuda, S.18
Funahashi, T.19
Tanaka, T.20
Kudoh, Y.21
Yamazaki, J.22
Kushida, N.23
Oguchi, A.24
Kikuchi, H.25
more..
-
15
-
-
0021764377
-
The amino-acid-sequence of a small DNA binding protein from the archaebacterium Sulfolobus solfataricus
-
Kimura M, Kimura J, Davie P, Reinhardt R, Dijk J (1984) The amino-acid-sequence of a small DNA binding protein from the archaebacterium Sulfolobus solfataricus. Febs Letters 176:176-178
-
(1984)
Febs Letters
, vol.176
, pp. 176-178
-
-
Kimura, M.1
Kimura, J.2
Davie, P.3
Reinhardt, R.4
Dijk, J.5
-
16
-
-
0033543174
-
The solution structure of the Sac7d/DNA complex: A small-angle X-ray scattering study
-
Krueger JK, McCrary BS, Wang AH, Shriver JW, Trewhella J, Edmondson SP (1999) The solution structure of the Sac7d/DNA complex: a small-angle X-ray scattering study. Biochemistry 38:10247-10255
-
(1999)
Biochemistry
, vol.38
, pp. 10247-10255
-
-
Krueger, J.K.1
McCrary, B.S.2
Wang, A.H.3
Shriver, J.W.4
Trewhella, J.5
Edmondson, S.P.6
-
17
-
-
2642690670
-
In vitro DNA binding of the archaeal protein Sso7d induces negative supercoiling at temperatures typical for thermophilic growth
-
Lopez-Garcia P, Knapp S, Ladenstein R, Forterre P (1998) In vitro DNA binding of the archaeal protein Sso7d induces negative supercoiling at temperatures typical for thermophilic growth. Nucleic Acids Res 26:2322-2328
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 2322-2328
-
-
Lopez-Garcia, P.1
Knapp, S.2
Ladenstein, R.3
Forterre, P.4
-
18
-
-
0032489503
-
Thermodynamic characterization of non-sequence-specific DNA-binding by the Sso7d protein from Sulfolobus solfataricus
-
Lundback T, Hansson H, Knapp S, Ladenstein R, Hard T (1998) Thermodynamic characterization of non-sequence-specific DNA-binding by the Sso7d protein from Sulfolobus solfataricus. J Mol Biol 276:775-786
-
(1998)
J Mol Biol
, vol.276
, pp. 775-786
-
-
Lundback, T.1
Hansson, H.2
Knapp, S.3
Ladenstein, R.4
Hard, T.5
-
19
-
-
33846190584
-
CC1, a novel crenarchaeal DNA binding protein
-
Luo X, Schwarz-Linek U, Botting CH, Hensel R, Siebers B, White MF (2007) CC1, a novel crenarchaeal DNA binding protein. J Bacteriol 189:403-409
-
(2007)
J Bacteriol
, vol.189
, pp. 403-409
-
-
Luo, X.1
Schwarz-Linek, U.2
Botting, C.H.3
Hensel, R.4
Siebers, B.5
White, M.F.6
-
20
-
-
0001270373
-
Electron microscopic study of DNA complexes with proteins from the archaebacterium Sulfolobus acidocaldarius
-
Lurz R, Grote M, Dijk J, Reinhardt R, Dobrinski B (1986) Electron microscopic study of DNA complexes with proteins from the archaebacterium Sulfolobus acidocaldarius. EMBO J 5:3715-3721
-
(1986)
EMBO J
, vol.5
, pp. 3715-3721
-
-
Lurz, R.1
Grote, M.2
Dijk, J.3
Reinhardt, R.4
Dobrinski, B.5
-
21
-
-
0031957673
-
Small abundant DNA binding proteins from the thermoacidophilic archaeon Sulfolobus shibatae constrain negative DNA supercoils
-
Mai VQ, Chen X, Hong R, Huang L (1998) Small abundant DNA binding proteins from the thermoacidophilic archaeon Sulfolobus shibatae constrain negative DNA supercoils. J Bacteriol 180:2560-2563
-
(1998)
J Bacteriol
, vol.180
, pp. 2560-2563
-
-
Mai, V.Q.1
Chen, X.2
Hong, R.3
Huang, L.4
-
22
-
-
0029156641
-
Gene cloning, expression, and characterization of the Sac7 proteins from the hyperthermophile Sulfolobus acidocaldarius
-
McAfee JG, Edmondson SP, Datta PK, Shriver JW, Gupta R (1995) Gene cloning, expression, and characterization of the Sac7 proteins from the hyperthermophile Sulfolobus acidocaldarius. Biochemistry 34:10063-10077
-
(1995)
Biochemistry
, vol.34
, pp. 10063-10077
-
-
McAfee, J.G.1
Edmondson, S.P.2
Datta, P.K.3
Shriver, J.W.4
Gupta, R.5
-
23
-
-
0029883976
-
Equilibrium DNA binding of Sac7d protein from the hyperthermophile Sulfolobus acidocaldarius: Fluorescence and circular dichroism studies
-
McAfee JG, Edmondson SP, Zegar I, Shriver JW (1996) Equilibrium DNA binding of Sac7d protein from the hyperthermophile Sulfolobus acidocaldarius: fluorescence and circular dichroism studies. Biochemistry 35:4034-4045
-
(1996)
Biochemistry
, vol.35
, pp. 4034-4045
-
-
McAfee, J.G.1
Edmondson, S.P.2
Zegar, I.3
Shriver, J.W.4
-
24
-
-
0025885691
-
DNA binding by the archaeal histone HMf results in positive supercoiling
-
Musgrave DR, Sandman KM, Reeve JN (1991) DNA binding by the archaeal histone HMf results in positive supercoiling. Proc Natl Acad Sci USA 88:10397-10401
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, pp. 10397-10401
-
-
Musgrave, D.R.1
Sandman, K.M.2
Reeve, J.N.3
-
25
-
-
0342614926
-
Codon usage tabulated from international DNA sequence databases: Status for the year 2000
-
Nakamura Y, Gojobori T, Ikemura T (2000) Codon usage tabulated from international DNA sequence databases: status for the year 2000. Nucleic Acids Res 28:292
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 292
-
-
Nakamura, Y.1
Gojobori, T.2
Ikemura, T.3
-
26
-
-
0037096967
-
DNA bending, compaction and negative supercoiling by the architectural protein Sso7d of Sulfolobus solfataricus
-
Napoli A, Zivanovic Y, Bocs C, Buhler C, Rossi M, Forterre P, Ciaramella M (2002) DNA bending, compaction and negative supercoiling by the architectural protein Sso7d of Sulfolobus solfataricus. Nucleic Acids Res 30:2656-2662
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 2656-2662
-
-
Napoli, A.1
Zivanovic, Y.2
Bocs, C.3
Buhler, C.4
Rossi, M.5
Forterre, P.6
Ciaramella, M.7
-
27
-
-
2342509638
-
Archaeal histones: Structures, stability and DNA binding
-
Reeve JN, Bailey KA, Li WT, Marc F, Sandman K, Soares DJ (2004) Archaeal histones: structures, stability and DNA binding. Biochem Soc Trans 32:227-230
-
(2004)
Biochem Soc Trans
, vol.32
, pp. 227-230
-
-
Reeve, J.N.1
Bailey, K.A.2
Li, W.T.3
Marc, F.4
Sandman, K.5
Soares, D.J.6
-
28
-
-
0032510217
-
The hyperthermophile chromosomal protein Sac7d sharply kinks DNA
-
Robinson H, Gao YG, McCrary BS, Edmondson SP, Shriver JW, Wang AH (1998) The hyperthermophile chromosomal protein Sac7d sharply kinks DNA. Nature 392:202-205
-
(1998)
Nature
, vol.392
, pp. 202-205
-
-
Robinson, H.1
Gao, Y.G.2
McCrary, B.S.3
Edmondson, S.P.4
Shriver, J.W.5
Wang, A.H.6
-
29
-
-
0034945083
-
The complete genome of the crenarchaeon Sulfolobus solfataricus P2
-
She Q, Singh RK, Confalonieri F, Zivanovic Y, Allard G, Awayez MJ, Chan-Weiher CC, Clausen IG, Curtis BA, De Moors A, Erauso G, Fletcher C, Gordon PM, Heikamp-de Jong I, Jeffries AC, Kozera CJ, Medina N, Peng X, Thi-Ngoc HP, Redder P, Schenk ME, Theriault C, Tolstrup N, Charlebois RL, Doolittle WF, Duguet M, Gaasterland T, Garrett RA, Ragan MA, Sensen CW, Van der Oost J (2001) The complete genome of the crenarchaeon Sulfolobus solfataricus P2. Proc Natl Acad Sci USA 98:7835-7840
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 7835-7840
-
-
She, Q.1
Singh, R.K.2
Confalonieri, F.3
Zivanovic, Y.4
Allard, G.5
Awayez, M.J.6
Chan-Weiher, C.C.7
Clausen, I.G.8
Curtis, B.A.9
De Moors, A.10
Erauso, G.11
Fletcher, C.12
Gordon, P.M.13
Heikamp-De Jong, I.14
Jeffries, A.C.15
Kozera, C.J.16
Medina, N.17
Peng, X.18
Thi-Ngoc, H.P.19
Redder, P.20
Schenk, M.E.21
Theriault, C.22
Tolstrup, N.23
Charlebois, R.L.24
Doolittle, W.F.25
Duguet, M.26
Gaasterland, T.27
Garrett, R.A.28
Ragan, M.A.29
Sensen, C.W.30
Van Der Oost, J.31
more..
-
30
-
-
9744270182
-
Spatial distribution of marine crenarchaeota group I in the vicinity of deep-sea hydrothermal systems
-
Takai K, Oida H, Suzuki Y, Hirayama H, Nakagawa S, Nunoura T, Inagaki F, Nealson KH, Horikoshi K (2004) Spatial distribution of marine crenarchaeota group I in the vicinity of deep-sea hydrothermal systems. Appl Environ Microbiol 70:2404-2413
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 2404-2413
-
-
Takai, K.1
Oida, H.2
Suzuki, Y.3
Hirayama, H.4
Nakagawa, S.5
Nunoura, T.6
Inagaki, F.7
Nealson, K.H.8
Horikoshi, K.9
-
31
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
32
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu D, Paulsen I, Nelson KE, Nelson W, Fouts DE, Levy S, Knap AH, Lomas MW, Nealson K, White O, Peterson J, Hoffman J, Parsons R, Baden-Tillson H, Pfannkoch C, Rogers YH, Smith HO (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304:66-74
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
Eisen, J.A.6
Wu, D.7
Paulsen, I.8
Nelson, K.E.9
Nelson, W.10
Fouts, D.E.11
Levy, S.12
Knap, A.H.13
Lomas, M.W.14
Nealson, K.15
White, O.16
Peterson, J.17
Hoffman, J.18
Parsons, R.19
Baden-Tillson, H.20
Pfannkoch, C.21
Rogers, Y.H.22
Smith, H.O.23
more..
-
33
-
-
2342463530
-
A novel strategy to engineer DNA polymerases for enhanced processivity and improved performance in vitro
-
Wang Y, Prosen DE, Mei L, Sullivan JC, Finney M, Vander Horn PB (2004) A novel strategy to engineer DNA polymerases for enhanced processivity and improved performance in vitro. Nucleic Acids Res 32:1197-1207
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1197-1207
-
-
Wang, Y.1
Prosen, D.E.2
Mei, L.3
Sullivan, J.C.4
Finney, M.5
Vander Horn, P.B.6
|