Thermodynamics of peptide aggregation processes: An analysis from perspectives of three statistical ensembles

Journal of Chemical Physics

Volumn 128, Issue 8, 2008, Pages

  Junghans, Christoph ^a,b   Bachmann, Michael ^a,c   Janke, Wolfhard ^a  

^a UNIVERSITY OF LEIPZIG   (Germany)

^b MAX PLANCK INSTITUTE FOR POLYMER RESEARCH   (Germany)

^c LUND UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER SIMULATION; CONFORMATIONS; HYDROPHOBICITY; PEPTIDES; PHASE SEPARATION; STATISTICAL METHODS;

CONTROL PARAMETER; HETEROPOLYMERS; MICROCANONICAL ENTROPY; SURFACE EFFECTS;

THERMODYNAMICS;

PEPTIDE;

ARTICLE; CHEMISTRY; COMPUTER SIMULATION; DIMERIZATION; ELECTRICITY; ENTROPY; HYDROPHOBICITY; MONTE CARLO METHOD; PHASE TRANSITION; PROTEIN CONFORMATION; STATISTICAL MODEL; THERMODYNAMICS;

COMPUTER SIMULATION; DIMERIZATION; ELECTROSTATICS; ENTROPY; HYDROPHOBICITY; MODELS, STATISTICAL; MONTE CARLO METHOD; PEPTIDES; PHASE TRANSITION; PROTEIN CONFORMATION; THERMODYNAMICS;

EID: 40149099893     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.2830233     Document Type: Article

References (29)

1. J. Gsponer and M. Vendruscolo, Prot. Pept. Lett. 13, 287 (2006).
2. H. Lin, R. Bhatia, and R. Lal, FASEB J. FAJOEC 0892-6638 15, 2433 (2001).
3. A. Quist, I. Doudevski, H. Lin, R. Azimova, D. Ng, B. Frangione, B. Kagan, J. Ghiso, and R. Lal, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 10.1073/pnas.0502066102 102, 10427 (2005).
4. H. A. Lashuel and P. T. Lansbury, Jr., Q. Rev. Biophys. QURBAW 0033-5835 39, 167 (2006).
5. D. H. E. Gross, Microcanonical Thermodynamics (World Scientific, Singapore, 2001).
6. D. H. E. Gross and J. F. Kenney, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1901658 122, 224111 (2005).
7. W. Thirring, Z. Physik 235, 339 (1970).
8. M. Schmidt, R. Kusche, T. Hippler, J. Donges, W. Kronmüller, B. von Issendorff, and H. Haberland, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.86.1191 86, 1191 (2001).
9. M. Pichon, B. Tamain, R. Bougault, and O. Lopez, Nucl. Phys. A NUPABL 0375-9474 749, 93c (2005).
10. O. Lopez, D. Lacroix, and E. Vient, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.95.242701 95, 242701 (2005).
11. W. Janke, Nucl. Phys. B (Proc. Suppl.) 63A-C, 631 (1998).
12. H. Behringer and M. Pleimling, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.74.011108 74, 011108 (2006).
13. D. J. Wales and R. S. Berry, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.73.2875 73, 2875 (1994); D. J. Wales and J. P. K. Doye, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.470494 103, 3061 (1995).
14. S. Hilbert and J. Dunkel, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.74.011120 74, 011120 (2006); J. Dunkel and S. Hilbert, Physica A PHYADX 0378-4371 10.1016/j.physa.2006.05.018 370, 390 (2006).
15. A. Nußbaumer, E. Bittner, T. Neuhaus, and W. Janke, Europhys. Lett. EULEEJ 0295-5075 10.1209/epl/i2006-10190-9 75, 716 (2006).
16. D. H. E. Gross, Physica E (Amsterdam) PELNFM 1386-9477 29, 251 (2005).
17. C. Junghans, M. Bachmann, and W. Janke, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.97.218103 97, 218103 (2006).
18. F. H. Stillinger, T. Head-Gordon, and C. L. Hirshfeld, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.48.1469 48, 1469 (1993); F. H. Stillinger and T. Head-Gordon, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.52.2872 52, 2872 (1995).
19. S. Schnabel, M. Bachmann, and W. Janke, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.98.048103 98, 048103 (2007); S. Schnabel, M. Bachmann, and W. Janke, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.2437204 126, 105102 (2007).
20. M. Bachmann, H. Arkn, and W. Janke, Phys. Rev. E PLEEE8 1063-651X 10.1103/PhysRevE.71.031906 71, 031906 (2005).
21. B. A. Berg and T. Neuhaus, Phys. Lett. B PYLBAJ 0370-2693 10.1016/0370-2693(91)91256-U 267, 249 (1991); B. A. Berg and T. Neuhaus, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.68.9 68, 9 (1992).
22. W. Janke, Physica A PHYADX 0378-4371 10.1016/S0378-4371(98)00014-4 254, 164 (1998); B. A. Berg, Fields Inst. Commun. ZZZZZZ 1069-5265 26, 1 (2000).
23. W. Janke, in Computer Simulations of Surfaces and Interfaces, NATO Advanced Studies Institute, Series II. Mathematics, Physics and Chemistry, edited by, B. Dünweg, D. P. Landau, and, A. I. Milchev, (Kluwer, Dordrecht, 2003), Vol. 114, p. 137.
24. T. elik and B. A. Berg, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.69.2292 69, 2292 (1992).
25. K. Hukushima and K. Nemoto, J. Phys. Soc. Jpn. JUPSAU 0031-9015 10.1143/JPSJ.65.1604 65, 1604 (1996); K. Hukushima, H. Takayama, and K. Nemoto, Int. J. Mod. Phys. C IJMPEO 0129-1831 10.1142/S0129183196000272 7, 337 (1996).
26. C. J. Geyer, in Computing Science and Statistics, Proceedings of the 23rd Symposium on the Interface, edited by, E. M. Keramidas, (Interface Foundation, Fairfax Station, 1991), p. 156.
27. U. H. E. Hansmann and L. T. Wille, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.88.068105 88, 068105 (2002).
28. M. Bachmann and W. Janke, Phys. Rev. Lett. PRLTAO 0031-9007 10.1103/PhysRevLett.91.208105 91, 208105 (2003); M. Bachmann and W. Janke, J. Chem. Phys. JCPSA6 0021-9606 10.1063/1.1651055 120, 6779 (2004).
29. C. Junghans, M. Bachmann, and W. Janke (unpublished).