메뉴 건너뛰기




Volumn 9, Issue , 2008, Pages

A first glimpse at the transcriptome of Physarum polycephalum

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; FUNGAL PROTEIN; TRANSCRIPTOME;

EID: 39849109512     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-6     Document Type: Article
Times cited : (37)

References (43)
  • 2
    • 23044438627 scopus 로고    scopus 로고
    • Selecting representative model micro-organisms
    • 1156902 15904495 10.1186/1471-2180-5-26
    • Holland BR Schmid J Selecting representative model micro-organisms BMC Microbiol 2005, 5(1):26. 1156902 15904495 10.1186/1471-2180-5-26
    • (2005) BMC Microbiol , vol.5 , Issue.1 , pp. 26
    • Holland, B.R.1    Schmid, J.2
  • 3
    • 33947195752 scopus 로고    scopus 로고
    • Arabidopsis, the botanical Drosophila: From mouse cress to model organism
    • Leonelli S Arabidopsis, the botanical Drosophila: From mouse cress to model organism Endeavour 2007, 1:1.
    • (2007) Endeavour , vol.1 , pp. 1
    • Leonelli, S.1
  • 4
    • 28844492079 scopus 로고    scopus 로고
    • Genomics of the fungal kingdom: Insights into eukaryotic biology
    • 10.1101/gr.3767105 16339359
    • Galagan JE Henn MR Ma LJ Cuomo CA Birren B Genomics of the fungal kingdom: Insights into eukaryotic biology Genome Res 2005, 15(12):1620-1631. 10.1101/gr.3767105 16339359
    • (2005) Genome Res , vol.15 , Issue.12 , pp. 1620-1631
    • Galagan, J.E.1    Henn, M.R.2    Ma, L.J.3    Cuomo, C.A.4    Birren, B.5
  • 5
    • 39849083529 scopus 로고    scopus 로고
    • The choice of model organisms in evo-devo
    • Jenner RA Wills MA The choice of model organisms in evo-devo Nat Rev Genet 2007, 6:6.
    • (2007) Nat Rev Genet , vol.6 , pp. 6
    • Jenner, R.A.1    Wills, M.A.2
  • 6
    • 33847081243 scopus 로고    scopus 로고
    • Comparative proteomic and transcriptomic profiling of the fission yeast Schizosaccharomyces pombe
    • 1828747 17299416
    • Schmidt MW Houseman A Ivanov AR Wolf DA Comparative proteomic and transcriptomic profiling of the fission yeast Schizosaccharomyces pombe Mol Syst Biol 2007, 3:79. 1828747 17299416
    • (2007) Mol Syst Biol , vol.3 , pp. 79
    • Schmidt, M.W.1    Houseman, A.2    Ivanov, A.R.3    Wolf, D.A.4
  • 9
    • 0030667683 scopus 로고    scopus 로고
    • Origin and evolution of the slime molds (Mycetozoa)
    • 23686 9342353 10.1073/pnas.94.22.12007
    • Baldauf SL Doolittle WF Origin and evolution of the slime molds (Mycetozoa) Proc Natl Acad Sci U S A 1997, 94(22):12007-12012. 23686 9342353 10.1073/pnas.94.22.12007
    • (1997) Proc Natl Acad Sci U S A , vol.94 , Issue.22 , pp. 12007-12012
    • Baldauf, S.L.1    Doolittle, W.F.2
  • 10
    • 0034602344 scopus 로고    scopus 로고
    • A kingdom-level phylogeny of eukaryotes based on combined protein data
    • 10.1126/science.290.5493.972 11062127
    • Baldauf SL Roger AJ Wenk-Siefert I Doolittle WF A kingdom-level phylogeny of eukaryotes based on combined protein data Science 2000, 290(5493):972-977. 10.1126/science.290.5493.972 11062127
    • (2000) Science , vol.290 , Issue.5493 , pp. 972-977
    • Baldauf, S.L.1    Roger, A.J.2    Wenk-Siefert, I.3    Doolittle, W.F.4
  • 11
    • 39849094813 scopus 로고    scopus 로고
    • University GSCW
    • University GSCW Physarum polycephalum Genome Project http://genome.wustl.edu/genome.cgi?GENOME=Physarum%20polycephalum
    • Physarum Polycephalum Genome Project
  • 12
    • 0030700436 scopus 로고    scopus 로고
    • Building a plasmodium: Development in the acellular slime mould Physarum polycephalum
    • 10.1002/bies.950191108
    • Bailey J Building a plasmodium: Development in the acellular slime mould Physarum polycephalum BioEssays 1997, 19:985-992. 10.1002/bies.950191108
    • (1997) BioEssays , vol.19 , pp. 985-992
    • Bailey, J.1
  • 13
    • 0009499061 scopus 로고
    • Genes and development in Physarum
    • Dee J Genes and development in Physarum Trends Genet 1987, 3:2087-213. 10.1016/0168-9525(87)90237-X
    • (1987) Trends Genet , vol.3 , pp. 208-213
    • Dee, J.1
  • 14
    • 34748812424 scopus 로고    scopus 로고
    • Mitosis, not just open or closed
    • 2043359 17660363 10.1128/EC.00178-07
    • De Souza CP Osmani SA Mitosis, not just open or closed Eukaryot Cell 2007, 6(9):1521-1527. 2043359 17660363 10.1128/EC.00178-07
    • (2007) Eukaryot Cell , vol.6 , Issue.9 , pp. 1521-1527
    • De Souza, C.P.1    Osmani, S.A.2
  • 15
    • 0027369152 scopus 로고
    • Patterns of inheritance, development and the mitotic cycle in the protist Physarum polycephalum
    • 8310878
    • Burland TG Solnica-Krezel L Bailey J Cunningham DB Dove WF Patterns of inheritance, development and the mitotic cycle in the protist Physarum polycephalum Adv Microb Physiol 1993, 35:1-69. 8310878
    • (1993) Adv Microb Physiol , vol.35 , pp. 1-69
    • Burland, T.G.1    Solnica-Krezel, L.2    Bailey, J.3    Cunningham, D.B.4    Dove, W.F.5
  • 16
    • 0014592418 scopus 로고
    • Sporulation in Physarum polycephalum: A model system for studies on differentiation
    • 10.1016/0014-4827(69)90156-6 5388419
    • Sauer HW Babcock KL Rusch HP Sporulation in Physarum polycephalum: A model system for studies on differentiation Exp Cell Res 1969, 57(2):319-327. 10.1016/0014-4827(69)90156-6 5388419
    • (1969) Exp Cell Res , vol.57 , Issue.2 , pp. 319-327
    • Sauer, H.W.1    Babcock, K.L.2    Rusch, H.P.3
  • 17
    • 0029410619 scopus 로고
    • Functional mapping of the branched signal transduction pathway that controls sporulation in Physarum polycephalum
    • 8570734
    • Starostzik C Marwan W Functional mapping of the branched signal transduction pathway that controls sporulation in Physarum polycephalum Photochem Photobiol 1995, 62(5):930-933. 8570734
    • (1995) Photochem Photobiol , vol.62 , Issue.5 , pp. 930-933
    • Starostzik, C.1    Marwan, W.2
  • 18
    • 0035872865 scopus 로고    scopus 로고
    • Nitric oxide synthase is induced in sporulation of Physarum polycephalum
    • 313797 11358872 10.1101/gad.890501
    • Golderer G Werner ER Leitner S Grobner P Werner-Felmayer G Nitric oxide synthase is induced in sporulation of Physarum polycephalum Genes Dev 2001, 15(10):1299-1309. 313797 11358872 10.1101/gad.890501
    • (2001) Genes Dev , vol.15 , Issue.10 , pp. 1299-1309
    • Golderer, G.1    Werner, E.R.2    Leitner, S.3    Grobner, P.4    Werner-Felmayer, G.5
  • 19
    • 0014681710 scopus 로고
    • Changes in RNA synthesis associated with differentiation (sporulation) in Physarum polycephalum
    • 5392097
    • Sauer HW Babcock KL Rusch HP Changes in RNA synthesis associated with differentiation (sporulation) in Physarum polycephalum Biochim Biophys Acta 1969, 195(2):410-421. 5392097
    • (1969) Biochim Biophys Acta , vol.195 , Issue.2 , pp. 410-421
    • Sauer, H.W.1    Babcock, K.L.2    Rusch, H.P.3
  • 20
    • 33745463000 scopus 로고    scopus 로고
    • Evolutionary dynamics of olfactory and other chemosensory receptor genes in vertebrates
    • 1850483 16607462 10.1007/s10038-006-0391-8
    • Niimura Y Nei M Evolutionary dynamics of olfactory and other chemosensory receptor genes in vertebrates J Hum Genet 2006, 51(6):505-517. 1850483 16607462 10.1007/s10038-006-0391-8
    • (2006) J Hum Genet , vol.51 , Issue.6 , pp. 505-517
    • Niimura, Y.1    Nei, M.2
  • 21
    • 0347722473 scopus 로고    scopus 로고
    • Genomics and variation of ionotropic glutamate receptors
    • 10.1196/annals.1300.003 14684433
    • Lipsky RH Goldman D Genomics and variation of ionotropic glutamate receptors Ann N Y Acad Sci 2003, 1003:22-35. 10.1196/annals.1300.003 14684433
    • (2003) Ann N Y Acad Sci , vol.1003 , pp. 22-35
    • Lipsky, R.H.1    Goldman, D.2
  • 22
    • 17944394278 scopus 로고    scopus 로고
    • Signaling receptome: A genomic and evolutionary perspective of plasma membrane receptors involved in signal transduction
    • 12815191
    • Ben-Shlomo I Yu Hsu S Rauch R Kowalski HW Hsueh AJ Signaling receptome: a genomic and evolutionary perspective of plasma membrane receptors involved in signal transduction Sci STKE 2003, 2003(187):RE9. 12815191
    • (2003) Sci STKE , vol.2003 , Issue.187
    • Ben-Shlomo, I.1    Yu Hsu, S.2    Rauch, R.3    Kowalski, H.W.4    Hsueh, A.J.5
  • 23
    • 33644559348 scopus 로고    scopus 로고
    • Functional evolution of the photolyase/cryptochrome protein family: Importance of the C terminus of mammalian CRY1 for circadian core oscillator performance
    • 1430250 16478995 10.1128/MCB.26.5.1743-1753.2006
    • Chaves I Yagita K Barnhoorn S Okamura H van der Horst GT Tamanini F Functional evolution of the photolyase/cryptochrome protein family: importance of the C terminus of mammalian CRY1 for circadian core oscillator performance Mol Cell Biol 2006, 26(5):1743-1753. 1430250 16478995 10.1128/MCB.26.5.1743-1753.2006
    • (2006) Mol Cell Biol , vol.26 , Issue.5 , pp. 1743-1753
    • Chaves, I.1    Yagita, K.2    Barnhoorn, S.3    Okamura, H.4    van der Horst, G.T.5    Tamanini, F.6
  • 24
    • 33644838294 scopus 로고    scopus 로고
    • Cryptochrome 1 contributes to blue-light sensing in pea
    • 1283782 16244154 10.1104/pp.105.067462
    • Platten JD Foo E Elliott RC Hecht V Reid JB Weller JL Cryptochrome 1 contributes to blue-light sensing in pea Plant Physiol 2005, 139(3):1472-1482. 1283782 16244154 10.1104/pp.105.067462
    • (2005) Plant Physiol , vol.139 , Issue.3 , pp. 1472-1482
    • Platten, J.D.1    Foo, E.2    Elliott, R.C.3    Hecht, V.4    Reid, J.B.5    Weller, J.L.6
  • 25
    • 23244448468 scopus 로고    scopus 로고
    • CPD photolyase gene from Spinacia oleracea: Repair of UV-damaged DNA and expression in plant organs
    • (Tokyo) 10.1269/jrr.46.157 15988133
    • Yoshihara R Imaki T Hori M Watanabe C Yamamoto K Takimoto K CPD photolyase gene from Spinacia oleracea: Repair of UV-damaged DNA and expression in plant organs J Radiat Res (Tokyo) 2005, 46(2):157-164. 10.1269/jrr.46.157 15988133
    • (2005) J Radiat Res , vol.46 , Issue.2 , pp. 157-164
    • Yoshihara, R.1    Imaki, T.2    Hori, M.3    Watanabe, C.4    Yamamoto, K.5    Takimoto, K.6
  • 26
    • 33846681383 scopus 로고    scopus 로고
    • Different levels of alternative splicing among eukaryotes
    • 1802581 17158149 10.1093/nar/gkl924
    • Kim E Magen A Ast G Different levels of alternative splicing among eukaryotes Nucleic Acids Res 2007, 35(1):125-131. 1802581 17158149 10.1093/nar/gkl924
    • (2007) Nucleic Acids Res , vol.35 , Issue.1 , pp. 125-131
    • Kim, E.1    Magen, A.2    Ast, G.3
  • 28
    • 4944241489 scopus 로고    scopus 로고
    • Intron retention is a major phenomenon in alternative splicing in Arabidopsis
    • 10.1111/j.1365-313X.2004.02172.x 15341630
    • Ner-Gaon H Halachmi R Savaldi-Goldstein S Rubin E Ophir R Fluhr R Intron retention is a major phenomenon in alternative splicing in Arabidopsis Plant J 2004, 39(6):877-885. 10.1111/j.1365-313X.2004.02172.x 15341630
    • (2004) Plant J , vol.39 , Issue.6 , pp. 877-885
    • Ner-Gaon, H.1    Halachmi, R.2    Savaldi-Goldstein, S.3    Rubin, E.4    Ophir, R.5    Fluhr, R.6
  • 29
    • 1942533477 scopus 로고    scopus 로고
    • Detection and evaluation of intron retention events in the human transcriptome
    • 1370565 15100430 10.1261/rna.5123504
    • Galante PA Sakabe NJ Kirschbaum-Slager N de Souza SJ Detection and evaluation of intron retention events in the human transcriptome Rna 2004, 10(5):757-765. 1370565 15100430 10.1261/rna.5123504
    • (2004) Rna , vol.10 , Issue.5 , pp. 757-765
    • Galante, P.A.1    Sakabe, N.J.2    Kirschbaum-Slager, N.3    de Souza, S.J.4
  • 30
    • 2142738304 scopus 로고    scopus 로고
    • WebLogo: A sequence logo generator
    • 419797 15173120 10.1101/gr.849004
    • Crooks GE Hon G Chandonia JM Brenner SE WebLogo: A sequence logo generator Genome Res 2004, 14(6):1188-1190. 419797 15173120 10.1101/ gr.849004
    • (2004) Genome Res , vol.14 , Issue.6 , pp. 1188-1190
    • Crooks, G.E.1    Hon, G.2    Chandonia, J.M.3    Brenner, S.E.4
  • 31
    • 33748596625 scopus 로고    scopus 로고
    • Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons
    • 1569180 16938881 10.1073/pnas.0603042103
    • Zhang XH Chasin LA Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons Proc Natl Acad Sci U S A 2006, 103(36):13427-13432. 1569180 16938881 10.1073/pnas.0603042103
    • (2006) Proc Natl Acad Sci U S A , vol.103 , Issue.36 , pp. 13427-13432
    • Zhang, X.H.1    Chasin, L.A.2
  • 32
    • 33645521073 scopus 로고    scopus 로고
    • Evolution of exon-intron structure and alternative splicing in fruit flies and malarial mosquito genomes
    • 1457027 16520458 10.1101/gr.4236606
    • Malko DB Makeev VJ Mironov AA Gelfand MS Evolution of exon-intron structure and alternative splicing in fruit flies and malarial mosquito genomes Genome Res 2006, 16(4):505-509. 1457027 16520458 10.1101/ gr.4236606
    • (2006) Genome Res , vol.16 , Issue.4 , pp. 505-509
    • Malko, D.B.1    Makeev, V.J.2    Mironov, A.A.3    Gelfand, M.S.4
  • 33
    • 0015074068 scopus 로고
    • Isolation and DNA content of nuclei of Physarum polycephalum
    • FAU - Mohberg, J 10.1016/0014-4827(71)90682-3 4997359
    • Mohberg J Fau-Rusch HP Rusch HP Isolation and DNA content of nuclei of Physarum polycephalum Exp Cell Res 1971, 66(2):305-16. FAU - Mohberg, J 10.1016/0014-4827(71)90682-3 4997359
    • (1971) Exp Cell Res , vol.66 , pp. 305-316
    • Mohberg, J.1    Fau-Rusch, H.P.2    Rusch, H.P.3
  • 34
    • 0017366028 scopus 로고
    • Nuclear DNA content and chromosome numbers throughout the life cycle of the Colonia strain of the myxomycete, Physarum polycephalum
    • 561091
    • Mohberg J Nuclear DNA content and chromosome numbers throughout the life cycle of the Colonia strain of the myxomycete, Physarum polycephalum J Cell Sci 1977, 24:95-108. 561091
    • (1977) J Cell Sci , vol.24 , pp. 95-108
    • Mohberg, J.1
  • 38
    • 7244245762 scopus 로고    scopus 로고
    • Finishing the euchromatic sequence of the human genome
    • 10.1038/nature03001 15496913
    • Finishing the euchromatic sequence of the human genome Nature 2004, 431(7011):931-945. 10.1038/nature03001 15496913
    • (2004) Nature , vol.431 , Issue.7011 , pp. 931-945
  • 39
    • 13444309653 scopus 로고    scopus 로고
    • Isolation of Physarum polycephalum plasmodial mutants altered in sporulation by chemical mutagenesis of flagellates
    • 10.1016/j.ejop.2004.08.001
    • Sujatha A Balaji S Devi R Marwan W Isolation of Physarum polycephalum plasmodial mutants altered in sporulation by chemical mutagenesis of flagellates Eur J Protistol 2005, 41:19-27. 10.1016/j.ejop.2004.08.001
    • (2005) Eur J Protistol , vol.41 , pp. 19-27
    • Sujatha, A.1    Balaji, S.2    Devi, R.3    Marwan, W.4
  • 40
    • 0032126977 scopus 로고    scopus 로고
    • Kinetic analysis of a signal-transduction pathway by time-resolved somatic complementation of mutants
    • 9622571
    • Starostzik C Marwan W Kinetic analysis of a signal-transduction pathway by time-resolved somatic complementation of mutants J Exp Biol 1998, 201(Pt 13):1991-1999. 9622571
    • (1998) J Exp Biol , vol.201 , Issue.PART 13 , pp. 1991-1999
    • Starostzik, C.1    Marwan, W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.