-
1
-
-
0037445309
-
Phylogeny of numerically abundant culturable anaerobic bacteria associated with degradation of rice plant residue in Japanese paddy field soil
-
Akasaka, H., Izawa, T., Ueki, K. & Ueki, A. (2003a). Phylogeny of numerically abundant culturable anaerobic bacteria associated with degradation of rice plant residue in Japanese paddy field soil. FEMS Microbiol Ecol 43, 149-161.
-
(2003)
FEMS Microbiol Ecol
, vol.43
, pp. 149-161
-
-
Akasaka, H.1
Izawa, T.2
Ueki, K.3
Ueki, A.4
-
2
-
-
0344897060
-
Propionicimonas paludicola gen. nov., sp. nov., a novel facultatively anaerobic, Gram-positive, propionate-producing bacterium isolated from plant residue in irrigated rice-field soil
-
2003b
-
Akasaka, H., Ueki, A., Hanada, S., Kamagata, Y. & Ueki, K. (2003b). Propionicimonas paludicola gen. nov., sp. nov., a novel facultatively anaerobic, Gram-positive, propionate-producing bacterium isolated from plant residue in irrigated rice-field soil. Int J Syst Evol Microbiol 53, 1991-1998.
-
(1991)
Int J Syst Evol Microbiol
, vol.53
-
-
Akasaka, H.1
Ueki, A.2
Hanada, S.3
Kamagata, Y.4
Ueki, K.5
-
3
-
-
31144434893
-
Effects of plant residue extract and cobalamin on growth and propionate production of Propionicimonas paludicola isolatqd from plant residue in irrigated rice field soil
-
Akasaka, H., Ueki, K. & Ueki, A. (2004). Effects of plant residue extract and cobalamin on growth and propionate production of Propionicimonas paludicola isolatqd from plant residue in irrigated rice field soil. Microbes Environ 19, 112-119.
-
(2004)
Microbes Environ
, vol.19
, pp. 112-119
-
-
Akasaka, H.1
Ueki, K.2
Ueki, A.3
-
4
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
5
-
-
31144470693
-
Bacteroides intestinalis sp. nov.,, isolated from human faeces
-
Bakir, M. A., Kitahara, M., Sakamoto, M., Matsumoto, M. & Benno, Y. (2006). Bacteroides intestinalis sp. nov.,, isolated from human faeces. Int J Syst Evol Microbiol 56, 151-154.
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 151-154
-
-
Bakir, M.A.1
Kitahara, M.2
Sakamoto, M.3
Matsumoto, M.4
Benno, Y.5
-
6
-
-
0033774937
-
A PCR assay to discriminate human and ruminal feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA
-
Bernhard, A. E. & Field, K. G. (2000). A PCR assay to discriminate human and ruminal feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA. Appl Environ Microbiol 66, 4571-4574.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 4571-4574
-
-
Bernhard, A.E.1
Field, K.G.2
-
7
-
-
22744444875
-
Novel predominant archaeal and bacterial groups revealed by molecular analysis of an anaerobic sludge digester
-
Chouari, R., Le Paslier, D., Daegelen, P., Ginestet, P., Weissenbach, J. & Sghir, A. (2005). Novel predominant archaeal and bacterial groups revealed by molecular analysis of an anaerobic sludge digester. Environ Microbiol 7, 1104-1115.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1104-1115
-
-
Chouari, R.1
Le Paslier, D.2
Daegelen, P.3
Ginestet, P.4
Weissenbach, J.5
Sghir, A.6
-
8
-
-
0000685441
-
The road map to the Manual
-
2nd edn, Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer
-
Garrity, G. M. & Holt, J. G. (2001). The road map to the Manual. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 119-166. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
-
(2001)
Bergey's Manual of Systematic Bacteriology
, vol.1
, pp. 119-166
-
-
Garrity, G.M.1
Holt, J.G.2
-
9
-
-
0030872620
-
Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis
-
Godon, J.-J., Zumstein, E., Dabert, P., Habouzit, F. & Moletta, R. (1997). Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis. Appl Environ Microbiol 63, 2802-2813.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 2802-2813
-
-
Godon, J.-J.1
Zumstein, E.2
Dabert, P.3
Habouzit, F.4
Moletta, R.5
-
10
-
-
0003535096
-
-
4th edn. Blacksburg, VA: Virginia Polytechnic Institute and State University
-
Holdeman, L. V., Cato, E. P. & Moore, W. E. C. (1977). Anaerobe Laboratory Manual, 4th edn. Blacksburg, VA: Virginia Polytechnic Institute and State University.
-
(1977)
Anaerobe Laboratory Manual
-
-
Holdeman, L.V.1
Cato, E.P.2
Moore, W.E.C.3
-
11
-
-
39749130499
-
-
Holdeman, L. V., Kelly, R. W. & Moore., W. E. C. (1984). Genus I. Bacteroides Castellani and Chalmers 1919, 959. In Bergey's Manual of Systematic, Bacteriology, 1, pp. 604-631. Edited by N. R. Krieg & J. G. Holt. Baltimore: Williams & Wilkins.
-
Holdeman, L. V., Kelly, R. W. & Moore., W. E. C. (1984). Genus I. Bacteroides Castellani and Chalmers 1919, 959. In Bergey's Manual of Systematic, Bacteriology, vol. 1, pp. 604-631. Edited by N. R. Krieg & J. G. Holt. Baltimore: Williams & Wilkins.
-
-
-
-
13
-
-
0034509027
-
Methanogenic activities on rice roots and plant residue and their contributions to methanogenesis in wetland rice field soil
-
Kaku, N., Ueki, A., Fujii, H. & Ueki., K. (2000). Methanogenic activities on rice roots and plant residue and their contributions to methanogenesis in wetland rice field soil. Soil Biol Biochem 32, 2001-2010.
-
(2000)
Soil Biol Biochem
, vol.32
, pp. 2001-2010
-
-
Kaku, N.1
Ueki, A.2
Fujii, H.3
Ueki, K.4
-
14
-
-
77956800518
-
Lipid and cell-wall analysis in bacterial systematics
-
Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
-
(1987)
Methods Microbiol
, vol.19
, pp. 161-207
-
-
Komagata, K.1
Suzuki, K.2
-
15
-
-
33847732738
-
Effect of process temperature on bacterial and archaeal communities in two methanogenic bioreactors treating organic household waste
-
Levén, L., Eriksson, A. R. B. & Schnürer, A. (2007). Effect of process temperature on bacterial and archaeal communities in two methanogenic bioreactors treating organic household waste. FEMS Microbiol Ecol 59, 683-693.
-
(2007)
FEMS Microbiol Ecol
, vol.59
, pp. 683-693
-
-
Levén, L.1
Eriksson, A.R.B.2
Schnürer, A.3
-
16
-
-
0019982011
-
Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxyl acids
-
Miller, L. T. (1982). Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxyl acids. J Clin Microbiol 10, 584-586.
-
(1982)
J Clin Microbiol
, vol.10
, pp. 584-586
-
-
Miller, L.T.1
-
17
-
-
0018423505
-
Cellular fatty acid comppsition in Gram-negative obligately anaerobic rods
-
Miyagawa, E., Azuma, R. & Suto, E. (1979). Cellular fatty acid comppsition in Gram-negative obligately anaerobic rods. J Gen Appl Microbiol 25, 41-51.
-
(1979)
J Gen Appl Microbiol
, vol.25
, pp. 41-51
-
-
Miyagawa, E.1
Azuma, R.2
Suto, E.3
-
18
-
-
0028230078
-
Comparative distribution and taxonomic value of cellular fatty acids in thirty-three genera of anaerobic Gram-negative bacilli
-
Moore, L. V. H., Bourne, D. M. & Moore, W. E. C. (1994). Comparative distribution and taxonomic value of cellular fatty acids in thirty-three genera of anaerobic Gram-negative bacilli. Int J Syst Bacteriol 44, 338-347.
-
(1994)
Int J Syst Bacteriol
, vol.44
, pp. 338-347
-
-
Moore, L.V.H.1
Bourne, D.M.2
Moore, W.E.C.3
-
19
-
-
0021266754
-
Bacteroides cellulosolvens sp. nov., a cellulolytic species from sewage-sludge
-
Murray, W. D., Sowden, L. C. & Colvin, J. R. (1984). Bacteroides cellulosolvens sp. nov., a cellulolytic species from sewage-sludge. Int J Syst Bacteriol 34, 185-187.
-
(1984)
Int J Syst Bacteriol
, vol.34
, pp. 185-187
-
-
Murray, W.D.1
Sowden, L.C.2
Colvin, J.R.3
-
20
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer, G., de Waal, E. C. & Uitterlinden, A. G. (1993). Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59, 695-700.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
de Waal, E.C.2
Uitterlinden, A.G.3
-
21
-
-
0028118435
-
Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related species
-
Paster, B. J., Dewhirst, F. E., Olsen, I. & Fraser, G. J. (1994). Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related species. J Bacteriol 176, 725-732.
-
(1994)
J Bacteriol
, vol.176
, pp. 725-732
-
-
Paster, B.J.1
Dewhirst, F.E.2
Olsen, I.3
Fraser, G.J.4
-
22
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
23
-
-
0023021290
-
Bacteroides xylanolyticus sp. nov., a xylanolytic bacterium from methane producing-cattle manure
-
Scholten-Koerselman, I., Houwaard, F., Janssen, P. & Zehnder, A. J. B. (1986). Bacteroides xylanolyticus sp. nov., a xylanolytic bacterium from methane producing-cattle manure. Antonie van Leeuwenhoek 52, 543-554.
-
(1986)
Antonie van Leeuwenhoek
, vol.52
, pp. 543-554
-
-
Scholten-Koerselman, I.1
Houwaard, F.2
Janssen, P.3
Zehnder, A.J.B.4
-
24
-
-
0034840478
-
The cellulosome and cellulose degradation by anaerobic bacteria
-
Schwarz, W. H. (2001). The cellulosome and cellulose degradation by anaerobic bacteria. Appl Microbiol Biotechnol 56, 634-649.
-
(2001)
Appl Microbiol Biotechnol
, vol.56
, pp. 634-649
-
-
Schwarz, W.H.1
-
25
-
-
0018874185
-
Fatty acid and isoprenoid quinone composition in the classification of Bacteroides melaninogenicus and related taxa
-
Shah, H. N. & Collins, M. D. (1980). Fatty acid and isoprenoid quinone composition in the classification of Bacteroides melaninogenicus and related taxa. J Appl Bacteriol 48, 75-87.
-
(1980)
J Appl Bacteriol
, vol.48
, pp. 75-87
-
-
Shah, H.N.1
Collins, M.D.2
-
26
-
-
0021012378
-
Genus Bacteroides. A chemotaxonomical perspective
-
Shah, H. N. & Collins, M. D. (1983). Genus Bacteroides. A chemotaxonomical perspective. J Appl Bacteriol 55, 403-416.
-
(1983)
J Appl Bacteriol
, vol.55
, pp. 403-416
-
-
Shah, H.N.1
Collins, M.D.2
-
27
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
28
-
-
0018718715
-
Cellular fatty acid composition of sulfate-reducing bacteria
-
Ueki, A. & Suto, T. (1979). Cellular fatty acid composition of sulfate-reducing bacteria. J Gen Appl Microbiol 25, 185-196.
-
(1979)
J Gen Appl Microbiol
, vol.25
, pp. 185-196
-
-
Ueki, A.1
Suto, T.2
-
29
-
-
0013190054
-
Sulfate reduction in the anaerobic digestion of animal waste
-
Ueki, A., Matsuda, K. & Ohtsuki, C. (1986). Sulfate reduction in the anaerobic digestion of animal waste. J Gen Appl Microbiol 32, 111-123.
-
(1986)
J Gen Appl Microbiol
, vol.32
, pp. 111-123
-
-
Ueki, A.1
Matsuda, K.2
Ohtsuki, C.3
-
30
-
-
31144439293
-
Paludtbacter propionicigenes gen. nov., sp. nov., a novel strictly anaerobic, Gram-negative, propionate-producing bacterium isolated from plant residue in irrigated rice-field soil in Japan
-
Ueki, A., Akasaka, H., Suzuki, D. & Ueki, K. (2006a). Paludtbacter propionicigenes gen. nov., sp. nov., a novel strictly anaerobic, Gram-negative, propionate-producing bacterium isolated from plant residue in irrigated rice-field soil in Japan. Int J Syst Evol Microbiol 56, 39-44.
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 39-44
-
-
Ueki, A.1
Akasaka, H.2
Suzuki, D.3
Ueki, K.4
-
31
-
-
33749033890
-
Xylanibacter oryzae gen. nov.; sp. nov., a novel strictly anaerobic, Gram-negative, xylanolytic bacterium isolated from rice-plant residue in flooded rice-field soil in Japan
-
Ueki, A., Akasaka, H., Suzuki, D., Hattori, S. & Ueki, K. (2006b). Xylanibacter oryzae gen. nov.; sp. nov., a novel strictly anaerobic, Gram-negative, xylanolytic bacterium isolated from rice-plant residue in flooded rice-field soil in Japan. Int J Syst Evol Microbiol 56, 2215-2221.
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 2215-2221
-
-
Ueki, A.1
Akasaka, H.2
Suzuki, D.3
Hattori, S.4
Ueki, K.5
-
32
-
-
34548147748
-
Prevotella paludtvivens sp. nov., a novel-strictly anaerobic, Gram-negative, hemicellulose-decomposing bacterium isolated from plant residue and rice roots in irrigated rice-field soil
-
Ueki, A., Akasaka, H., Satoh, A., Suzuki, D. & Ueki, K. (2007). Prevotella paludtvivens sp. nov., a novel-strictly anaerobic, Gram-negative, hemicellulose-decomposing bacterium isolated from plant residue and rice roots in irrigated rice-field soil. Int J Syst Evol Microbiol 57, 1803-1809.
-
(2007)
Int J Syst Evol Microbiol
, vol.57
, pp. 1803-1809
-
-
Ueki, A.1
Akasaka, H.2
Satoh, A.3
Suzuki, D.4
Ueki, K.5
-
33
-
-
27844547968
-
Bacteroides coprosuis sp. nov., isolated from swine-manure storage pits
-
Whitehead, T. R., Cotta,, M. A., Collins, M. D., Falsen, E. & Lawson, P. A. (2005). Bacteroides coprosuis sp. nov., isolated from swine-manure storage pits. Int J Sys Evol Microbiol 55, 2515-2518.
-
(2005)
Int J Sys Evol Microbiol
, vol.55
, pp. 2515-2518
-
-
Whitehead, T.R.1
Cotta, M.A.2
Collins, M.D.3
Falsen, E.4
Lawson, P.A.5
-
34
-
-
0018079353
-
Factors affecting production of catalase by Bacteroides
-
Wilkins, T. D., Wagner, D. L., Veltri, B. J., Jr & Gregory, E. M. (1978). Factors affecting production of catalase by Bacteroides. J Clin Microbiol 8, 553-557.
-
(1978)
J Clin Microbiol
, vol.8
, pp. 553-557
-
-
Wilkins, T.D.1
Wagner, D.L.2
Veltri Jr, B.J.3
Gregory, E.M.4
|