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Volumn 14, Issue 5, 2007, Pages 217-225

Genotype matrix mapping: Searching for quantitative trait loci interactions in genetic variation in complex traits

Author keywords

Genetic variation; Genotype matrix mapping; QTL interaction

Indexed keywords

ALGORITHM; ALLELE; ARTICLE; BIOLOGICAL MODEL; CHROMOSOME MAP; CLOVER; FLOWER; GENETIC DATABASE; GENETIC MARKER; GENETIC VARIABILITY; GENETICS; GENOTYPE; GROWTH, DEVELOPMENT AND AGING; METHODOLOGY; PHENOTYPE; QUANTITATIVE TRAIT LOCUS; STATISTICS;

EID: 39749132326     PISSN: 13402838     EISSN: 17561663     Source Type: Journal    
DOI: 10.1093/dnares/dsm020     Document Type: Article
Times cited : (29)

References (32)
  • 1
    • 33744980661 scopus 로고    scopus 로고
    • Genetic association mapping and genome organization of maize
    • Yu, J. and Buckler, E. S. 2006, Genetic association mapping and genome organization of maize, Curr. Opin. Biotech., 17, 155-160.
    • (2006) Curr. Opin. Biotech , vol.17 , pp. 155-160
    • Yu, J.1    Buckler, E.S.2
  • 2
    • 1842474811 scopus 로고    scopus 로고
    • Quantitative genetic variation: A postmodern view
    • Farrall, M. 2004, Quantitative genetic variation: a postmodern view, Hum. Mol. Genet., 13, R1-R7.
    • (2004) Hum. Mol. Genet , vol.13
    • Farrall, M.1
  • 3
    • 20444472340 scopus 로고    scopus 로고
    • Mapping quantitative trait loci in humans: Achievements and limitations
    • Majumder, P. P. and Ghosh, S. 2005, Mapping quantitative trait loci in humans: achievements and limitations, J. Clin. Invest., 115, 1419-1424.
    • (2005) J. Clin. Invest , vol.115 , pp. 1419-1424
    • Majumder, P.P.1    Ghosh, S.2
  • 4
    • 28844442794 scopus 로고    scopus 로고
    • Genomics of the future: Identification of quantitative trait loci in the mouse
    • Flaherty, L., Herron, B. and Symula, D. 2005, Genomics of the future: identification of quantitative trait loci in the mouse. Genome Res., 15, 1741-1745.
    • (2005) Genome Res , vol.15 , pp. 1741-1745
    • Flaherty, L.1    Herron, B.2    Symula, D.3
  • 5
    • 0034486611 scopus 로고    scopus 로고
    • Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene
    • Yano, M., Katayose, Y., Ashikari, M. et al. 2000, Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS, Plant Cell, 12, 2473-2484.
    • (2000) CONSTANS, Plant Cell , vol.12 , pp. 2473-2484
    • Yano, M.1    Katayose, Y.2    Ashikari, M.3
  • 6
    • 20444451211 scopus 로고    scopus 로고
    • Linkage disequilibrium maps and association mapping
    • Morton, N. E. 2005, Linkage disequilibrium maps and association mapping, J. Clin. Invest., 115, 1425-1430.
    • (2005) J. Clin. Invest , vol.115 , pp. 1425-1430
    • Morton, N.E.1
  • 7
    • 0027363428 scopus 로고
    • Theoretical basis of separation of multiple linked gene effects on mapping quantitative trait loci
    • Zeng, Z. B. 1993, Theoretical basis of separation of multiple linked gene effects on mapping quantitative trait loci, Proc. Natl. Acad. Sci. USA, 90, 10972-10976.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 10972-10976
    • Zeng, Z.B.1
  • 8
    • 0028348164 scopus 로고
    • High resolution of quantitative trait into multiple loci via interval mapping
    • Jansen, R. C. and Stam, P. 1994, High resolution of quantitative trait into multiple loci via interval mapping, Genetics, 136, 1447-1445.
    • (1994) Genetics , vol.136 , pp. 1447-1445
    • Jansen, R.C.1    Stam, P.2
  • 9
    • 34547109669 scopus 로고    scopus 로고
    • Locating multiple interacting quantitative trait loci using rank-based model selection
    • Zak, M., Baierl, A., Bogdan, M. and Futschik, A. 2007, Locating multiple interacting quantitative trait loci using rank-based model selection, Genetics, 176, 1845-1854.
    • (2007) Genetics , vol.176 , pp. 1845-1854
    • Zak, M.1    Baierl, A.2    Bogdan, M.3    Futschik, A.4
  • 10
    • 33745079199 scopus 로고    scopus 로고
    • The Challenge for genetic epidemiologist: How to analyze large number of SNPs in relation to complex diseases
    • Heidema, A. G., Boer, J. M. A., Nagelkerke, N. et al. 2006, The Challenge for genetic epidemiologist: how to analyze large number of SNPs in relation to complex diseases, BMC Genetics, 7, 23.
    • (2006) BMC Genetics , vol.7 , pp. 23
    • Heidema, A.G.1    Boer, J.M.A.2    Nagelkerke, N.3
  • 11
    • 0036199370 scopus 로고    scopus 로고
    • Modeling epistasis of quantitative trait loci using Cckerham's model
    • Kao, C. H. and Zeng, Z. B. 2002, Modeling epistasis of quantitative trait loci using Cckerham's model, Genetics, 160, 1243-1261.
    • (2002) Genetics , vol.160 , pp. 1243-1261
    • Kao, C.H.1    Zeng, Z.B.2
  • 12
    • 3142698408 scopus 로고    scopus 로고
    • Modifying the Schwarz Bayesian information criterion to locate multiple interacting quantitative trait loci
    • Bogdan, M., Ghosh, J. K. and Doerge, R. W. 2004, Modifying the Schwarz Bayesian information criterion to locate multiple interacting quantitative trait loci, Genetics, 167, 989-999.
    • (2004) Genetics , vol.167 , pp. 989-999
    • Bogdan, M.1    Ghosh, J.K.2    Doerge, R.W.3
  • 13
    • 3142605274 scopus 로고    scopus 로고
    • Detection of multiple QTL with epistatic effects under a mixed inheritance model in an outbred population
    • Narita, A. and Sasaki, Y. 2004, Detection of multiple QTL with epistatic effects under a mixed inheritance model in an outbred population, Genet. Sel. Evol., 36, 415-433.
    • (2004) Genet. Sel. Evol , vol.36 , pp. 415-433
    • Narita, A.1    Sasaki, Y.2
  • 14
    • 0034973569 scopus 로고    scopus 로고
    • Multifactor- dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer
    • Ritchie, M. D., Hahn, L. W., Roodi, N. et al. 2001, Multifactor- dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer, Am. J. Hum. Genet., 69, 138-147.
    • (2001) Am. J. Hum. Genet , vol.69 , pp. 138-147
    • Ritchie, M.D.1    Hahn, L.W.2    Roodi, N.3
  • 15
    • 2942517830 scopus 로고    scopus 로고
    • An application of conditional logistic regression and multifactor dimensionality reduction for detecting gene-gene interactions on risk of myocardial infarction: The importance of model validation
    • Coffey, C. S., Hebert, P. R., Ritchie, M. D. et al. 2004, An application of conditional logistic regression and multifactor dimensionality reduction for detecting gene-gene interactions on risk of myocardial infarction: the importance of model validation, BMC Bioinformatics, 5, 49.
    • (2004) BMC Bioinformatics , vol.5 , pp. 49
    • Coffey, C.S.1    Hebert, P.R.2    Ritchie, M.D.3
  • 16
    • 1842866369 scopus 로고    scopus 로고
    • Multifactor-dimensionality reduction shows a two locus interaction associated with Type 2 diabetes mellitus
    • Cho, Y. M., Ritchie, M. D., Moore, J. H. et al. 2004, Multifactor-dimensionality reduction shows a two locus interaction associated with Type 2 diabetes mellitus, Diabetologia, 47, 549-554.
    • (2004) Diabetologia , vol.47 , pp. 549-554
    • Cho, Y.M.1    Ritchie, M.D.2    Moore, J.H.3
  • 17
    • 33646547906 scopus 로고    scopus 로고
    • Comprehensive structural analysis of the genome of red clover (Trifolium pratense L.)
    • Sato, S., Isobe, S., Asamizu, E. et al. 2005, Comprehensive structural analysis of the genome of red clover (Trifolium pratense L.), DNA Res., 12, 301-364.
    • (2005) DNA Res , vol.12 , pp. 301-364
    • Sato, S.1    Isobe, S.2    Asamizu, E.3
  • 18
    • 0043210329 scopus 로고    scopus 로고
    • Swiss Mattenklee landraces, a distinct and diverse genetic resource of red clover (Trifolium pratense L.)
    • Kölliker, R., Herrmann, D., Boller, B. and Widmer, F. 2003, Swiss Mattenklee landraces, a distinct and diverse genetic resource of red clover (Trifolium pratense L.), Theor. Appl. Genet., 107, 306-315.
    • (2003) Theor. Appl. Genet , vol.107 , pp. 306-315
    • Kölliker, R.1    Herrmann, D.2    Boller, B.3    Widmer, F.4
  • 19
    • 0034118493 scopus 로고    scopus 로고
    • Inference of Population Structure using multilocus genotype data
    • Pritchard, J. K., Stephens, M. and Donnelly, P. 2000, Inference of Population Structure using multilocus genotype data, Genetics, 155, 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 20
    • 33645129580 scopus 로고    scopus 로고
    • Tracing synergetic behavior of the QTLs affecting oral glucose tolerance in the OLETF rat
    • Nakaya, A., Hishigaki, H. and Morishita, S. 1999, Tracing synergetic behavior of the QTLs affecting oral glucose tolerance in the OLETF rat, Genome Informatics, 10, 155-165.
    • (1999) Genome Informatics , vol.10 , pp. 155-165
    • Nakaya, A.1    Hishigaki, H.2    Morishita, S.3
  • 21
    • 10244253968 scopus 로고    scopus 로고
    • Constrained clusters of gene expression profiles with pathological features
    • Sese, J., Kurokawa, Y., Monden, M. et al. 2004, Constrained clusters of gene expression profiles with pathological features, Bioinformatics, 20, 3137-3145.
    • (2004) Bioinformatics , vol.20 , pp. 3137-3145
    • Sese, J.1    Kurokawa, Y.2    Monden, M.3
  • 22
    • 33751074962 scopus 로고    scopus 로고
    • Test for interaction between two unlinked loci
    • Zhao, J., Jin, L. and Xiong, M. 2006, Test for interaction between two unlinked loci, Am. J. Hum. Genet., 79, 831-845.
    • (2006) Am. J. Hum. Genet , vol.79 , pp. 831-845
    • Zhao, J.1    Jin, L.2    Xiong, M.3
  • 23
    • 34548557191 scopus 로고    scopus 로고
    • Identifying quantitative trait locus by genetic background interactions in association studies
    • Jannink, J. 2007, Identifying quantitative trait locus by genetic background interactions in association studies, Genetics, 176, 553-561.
    • (2007) Genetics , vol.176 , pp. 553-561
    • Jannink, J.1
  • 24
    • 30544438208 scopus 로고    scopus 로고
    • QTL analysis of seed yield components in red clover (Trifolium pratense L.)
    • Herrmann, D., Boller, B., Studer, B. et al. 2006, QTL analysis of seed yield components in red clover (Trifolium pratense L.), Theor. Appl. Genet., 112, 536-545.
    • (2006) Theor. Appl. Genet , vol.112 , pp. 536-545
    • Herrmann, D.1    Boller, B.2    Studer, B.3
  • 25
    • 0037456823 scopus 로고    scopus 로고
    • Genetics of gene expression surveyed in maize, mouse and man
    • Schadt, E. E., Monks, S. A., Drake, T. A. et al. 2003, Genetics of gene expression surveyed in maize, mouse and man, Nature, 422, 297-302.
    • (2003) Nature , vol.422 , pp. 297-302
    • Schadt, E.E.1    Monks, S.A.2    Drake, T.A.3
  • 26
    • 33846873672 scopus 로고    scopus 로고
    • eQTL Viewer: Visualizing how sequence variation affects genome-wide transcription
    • Zou, W., Aylor, D. L. and Zeng, Z. B. 2007, eQTL Viewer: visualizing how sequence variation affects genome-wide transcription, BMC Bioinformatics, 8, 7-11.
    • (2007) BMC Bioinformatics , vol.8 , pp. 7-11
    • Zou, W.1    Aylor, D.L.2    Zeng, Z.B.3
  • 27
    • 0028090414 scopus 로고
    • Genetic dissection of complex traits
    • Lander, E. S. and Schork, N. J. 1994, Genetic dissection of complex traits, Science, 265, 2037-2048.
    • (1994) Science , vol.265 , pp. 2037-2048
    • Lander, E.S.1    Schork, N.J.2
  • 28
    • 31744440502 scopus 로고    scopus 로고
    • A unified mixed-model method for association mapping that accounts for multiple levels of relatedness
    • Yu, J., Pressoir, G., Briggs, W. H. et al. 2006, A unified mixed-model method for association mapping that accounts for multiple levels of relatedness, Nat. Genet., 38, 203-208.
    • (2006) Nat. Genet , vol.38 , pp. 203-208
    • Yu, J.1    Pressoir, G.2    Briggs, W.H.3
  • 30
    • 27744539214 scopus 로고    scopus 로고
    • Assessing the power of tag SNPs in the mapping of quantitative trait loci (QTL) with extremal and random samples
    • Zhang, K. and Sun, F. 2005, Assessing the power of tag SNPs in the mapping of quantitative trait loci (QTL) with extremal and random samples, BMC Genetics, 6, 51.
    • (2005) BMC Genetics , vol.6 , pp. 51
    • Zhang, K.1    Sun, F.2
  • 31
    • 22144499636 scopus 로고    scopus 로고
    • Experimental designs for reliable detection of linkage disequilibrium in unstructured random population association studies
    • Ball, R. D. 2005, Experimental designs for reliable detection of linkage disequilibrium in unstructured random population association studies, Genetics, 170, 859-873.
    • (2005) Genetics , vol.170 , pp. 859-873
    • Ball, R.D.1
  • 32
    • 34248993659 scopus 로고    scopus 로고
    • Power and precision of alternate methods for linkage disequilibrium mapping of quantitative trait loci
    • Zhao, H. H., Fernando, R. L. and Dekkers, J. C. M. 2007, Power and precision of alternate methods for linkage disequilibrium mapping of quantitative trait loci, Genetics, 175, 1975-1986.
    • (2007) Genetics , vol.175 , pp. 1975-1986
    • Zhao, H.H.1    Fernando, R.L.2    Dekkers, J.C.M.3


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