Mitochondrial cytochrome b variation in sleeper sharks (Squaliformes: Somniosidae)

Marine Biology

Volumn 153, Issue 6, 2008, Pages 1015-1022

  Murray, Brent William ^a   Wang, John Y ^b,c   Yang, Shih Chu ^d   Stevens, John D ^e   Fisk, Aaron ^f   Svavarsson, Jörundur ^g  

^a UNIVERSITY OF NORTHERN BRITISH COLUMBIA   (Canada)

^b FormosaCetus Research and Conservation Group   (Canada)

^c NATIONAL MUSEUM OF MARINE BIOLOGY AND AQUARIUM   (Taiwan)

^d Formosacetus Research and Conservation Group   (Taiwan)

^e CSIRO   (Australia)

^f UNIVERSITY OF WINDSOR   (Canada)

^g UNIVERSITY OF ICELAND   (Iceland)

Author keywords

[No Author keywords available]

Indexed keywords

CLADISTICS; CYTOCHROME; DEEP-SEA ORGANISM; DIVERGENCE; GENETIC MARKER; GENETIC STRUCTURE; GENETIC VARIATION; MITOCHONDRIAL DNA; PARSIMONY ANALYSIS; SAMPLING; SHARK; VARIANCE ANALYSIS;

ARCTIC OCEAN; ATLANTIC OCEAN; ATLANTIC OCEAN (NORTH); PACIFIC OCEAN; PACIFIC OCEAN (NORTH); SOUTHERN OCEAN;

CHONDRICHTHYES; SOMNIOSIDAE; SOMNIOSUS; SOMNIOSUS ANTARCTICUS; SOMNIOSUS MICROCEPHALUS; SOMNIOSUS PACIFICUS; SQUALIFORMES;

EID: 39649117340     PISSN: 00253162     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00227-007-0871-1     Document Type: Article

References (45)

1. Avise JC (2004) Molecular markers, natural history, and evolution. Sinauer Associates, Inc. 2nd edn. p 684
2. Beerli P, Felsenstein J (2001) Maximum likelihood estimation of a migration matrix and effective population sizes in n populations by using a coalescent approach. PNAS 98:4563-4568
3. Benz GW, Hocking R, Kowunna AK Sr, Bullard SA, George JC (2004) A second species of Arctic shark: Pacific sleeper shark Somniosus pacificus from Point Hope, Alaska. Polar Biol 27:250-252
4. Bernardi G, Powers DA (1992) Molecular phylogeney of the prickly shark, Echinorhinus cookie, based on a nuclear (18S rRNA) and a mitochondrial (cytochrome b) gene. Mol Phylogenet Evol 2:161-167
5. Chakraborty R, Weiss KM (1991) Genetic variation of the mitochondrial DNA genome in American Indians is at mutation-drift equilibrium. Am J Hum Genet 86:497-506
6. Chan RWK, Dixon PI, Pepperell JG, Reid DD (2003) Applications od DNA-based techniques for the identification of whaler sharks (Carcharhinus spp.) caught in protective beach meshing and by recreational fisheries off the coast of New South Wales. Fish Bull 101:910-914
7. Chapman DD, Abercrombie DL, Douady CJ, Pikitch EK, Stanhope MJ, Shivji MS (2003) A streamlined, bi-organelle, multiplex PCR approach to species identification: application to global conservation and trade monitoring of the great white shark, Carcharondon carcharias. Conserv Genet 4:415-425
8. Clement M, Posado D, Crandall KA (2000) TCS: a computer program for estimating gene genologies. Mol Ecol 9:1757-1659
9. Compagno LJV (1984) FAO species catalogue. Sharks of the world. An annotated and illustrated catalogue of the shark species known to date. Part 1. Haxanchiformes to Lamniformes. FAO Fish Synop 4:1-249
10. Duncan KM, Martin AP, Bowen BW, De Couet HG (2006) Global phylogeography of the scalloped hammerhead shark (Sphyrna lewini). Mol Ecol 15:2239-2251
11. Ewens WJ (1972) The sampling theory of selectively neutral alleles. Theor Popul Biol 3:87-112
12. Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evol Bioinform Online 1:47-50
13. Fu Y-X (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and backgroud selection. Genetics 147:915-925
14. Gardner MG, Ward RD (1998) Population structure of the Australian gummy shark (Mustelus antarcticus Guenther) inferred from allozymes, mitochondrial DNA and vertebrae counts. Mar Freshw Res 49:733-745
15. Heist EJ, Graves JE, Musick JA (1995) Population genetics of the sandbar shark (Carcharhinus plumbeus) in the Gulf of Mexico and Mid-Atlantic bight. Copeia 1995(3):555-562
16. Heist EJ, Musick JA, Graves JE (1996a) Mitochondrial DNA diversity and divergence among sharpnose sharks, Rhizoprionodon terraenovae, from the Gulf of Mexico and Mid-Atlantic bight. Fish Bull 94:664-668
17. Heist EJ, Musick JA, Graves JE (1996b) Genetic population structure of the shortfin mako (Isurus oxyrinchus) inferred from restriction fragment length polymorphism analysis of mitochondrial DNA. Can J Fish Aquat Sci 53:583-588
18. Heist EJ, Gold JR (1999) Genetic identification of sharks in the U.S. Atlantic large coastal shark fishery. Fish Bull 97:53-61
19. Herdendorf CE, Berra TM (1995) A Greenland shark from the wreck of the SS Central America at 2,200 meters. Trans Am Fish Soc 124:950-953
20. Hoelzel AR (2001) Shark fishing in fin soap. Conserv Genet 2:69-72
21. Keeney DB, Heupel MR, Hueter RE, Heist EJ (2005) Microsatellite and mitochondrial DNA analysis of the genetic structure of blacktip shark (Carcharhinus limbatus) nurseries in the northwestern Atlantic, Gulf of Mexico, and Caribbean Sea. Mol Ecol 14:1911-1923
22. Kitamura Y, Takemura A, Watabe S, Taniuchi T, Shimizu M (1996) Molecular phylogeny of the sharks and rays of superorder Squalea based on mitochondrial cytochrome b gene. Fish Sci 62:340-343
23. Kumar S, Tamura K, Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150-163
24. Knowlton N, Weigt LA (1998) New dates and new rates for divergence across the Isthmus of Panama. Proc Biol Sci 265:2257-2263
25. López JA, Ryburn JA, Fedrigo O, Naylor GJP (2006) Phylogeny of sharks of the family Triakidae (Carcharhiniformes) and its implication for the evolution of carchariniform placental viviparity. Mol Phylogenet Evol 40:50-60
26. Martin AP, Naylor GJP, Palumbi SR (1992) Rates of mitochondrial DNA evolution are slow in sharks compared to mammals. Nature 357:153-155
27. Naylor GJP, Martin AP, Mattison EG, Brown WM (1997) Interrelationships of Lamniform sharks: testing phylogenetic hypotheses with sequence data. In: Kocher TD, Stepien CA (eds) Molecular systematics of fishes, Academic Press
28. Naylor GJP, Ryburn JA, Fedrigo O, López A (2005) Phylogenetic relationships among the major lineages of sharks and rays deduced from multiple genes. In: Hamlett W, Jamieson B (eds) Reproductive biology and phylogeny of Chondrichthyans (Sharks, skates, stingrays and chimaeras). Univ Queensland Press
29. Pardini AT, Jones CS, Noble LR, Kreiser B, Malcolm H, Bruce BD, Stevens JD, Cliff G, Scholl MC, Francis M, Duffy CAJ, Martin AP (2001) Sex-biased dispersal of great white sharks. Nature 412:139-140
30. Pesole G, Gissi C, De Chirico A, Saccone C (1999) Nucleotide substitution rate of mammalian mitochondrial genomes. J Mol Evol 48:427-434
31. Rice WR (1989) Analyzing tables of statistical tests. Evolution 43:223-225
32. Sambrook J, Russell DW (2001) Molecular cloning: A Laboratory Manual, 3rd edn. Cold Spring Harbor Laboratory Press, New York, p 999
33. Schneider S, Excoffier L (1999) Estimation of demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: Application to human mitochondrial DNA. Genetics 152:1079-1089
34. Schrey AW, Heist EJ (2003) Microsatellite analysis of population structure in the shortfin mako (Isurus oxyrinchus). Can J Fish Aquat Sci 60:670-675
35. Sezaki K, Begum RA, Wongrat P, Srivastava MP, SriKantha S, Kikuchi K, Ishihara H, Taniuchi T, Watabe S (1999) Molecular phylogeny of Asian freshwater and marine stingrays based on the DNA nucleotide and deduced amino acid sequences of the cytochrome b gene. Fish Sci 65:563-570
36. Skomal GB, Benz GW (2004) Ultrasonic tracking of Greenland sharks, Somniosus microcephalus, under Arctic ice. Mar Biol 145:489-498
37. Stokesbury MJW, Harvey-Clark C, Gallant J, Block BA, Myers RA (2005) Movement and environmental preferences of Greenland sharks (Somniosus microcephalus) electronically tagged in the St. Lawrence Estuary, Canada. Mar Biol 148:159-165
38. Tajima F (1983) Evolutionary relationship of DNA sequences in finite populations. Genetics 105:437-460
39. Tajima F (1996) The amount of DNA polymorphism maintained in a finite population when the neutral mutation rate varies among sites. Genetics 143:1457-1465
40. Templeman W (1963) Distribution of sharks in the Canadian Atlantic. Bull Fish Res Board Can No. 140
41. Templeton AR (1998) Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Mol Ecol 7:381-397
42. Wang JY, Yang S-C (2004) First records of Pacific sleeper sharks (Somniosus pacificus Bigelow and Schroeder, 1944) in the subtropical waters of eastern Taiwan. Bull Marine Sci 74:229-235
43. Watterson G (1975) On the number of segregating sites in genetical models without recombination. Theor Popul Biol 7:256-276
44. Yano K, Stevens JD, Compagno LJV (2004) A review of the systematics of the sleeper shark genus Somniosus with a redescription of Somniosus (Somniosus) antarcticus and Somniosus (Rhinoscymnus) longus (Squaliformes: Somniosidea). Ichthyol Res 51:360-373
45. Zouros E (1979) Mutation rates, population sizes and amounts of electrophoretic variation of enzyme loci in natural populations. Genetics 92:623-646