-
3
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
10.1126/science.290.5494.1151 11073452
-
Lynch M Conery JS The evolutionary fate and consequences of duplicate genes Science 2000, 290(5494):1151-1155 10.1126/science.290.5494.1151 11073452
-
(2000)
Science
, vol.290
, Issue.5494
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
4
-
-
0031924363
-
The frequency distribution of gene family sizes in complete genomes
-
9580988
-
Huynen MA van Nimwegen E The frequency distribution of gene family sizes in complete genomes Mol Biol Evol 1998, 15(5):583-589 9580988
-
(1998)
Mol Biol Evol
, vol.15
, Issue.5
, pp. 583-589
-
-
Huynen, M.A.1
van Nimwegen, E.2
-
5
-
-
0035798398
-
Protein family and fold occurrence in genomes: Power-law behaviour and evolutionary model
-
10.1006/jmbi.2001.5079 11697896
-
Qian J Luscombe NM Gerstein M Protein family and fold occurrence in genomes: Power-law behaviour and evolutionary model J Mol Biol 2001, 313(4):673-681 10.1006/jmbi.2001.5079 11697896
-
(2001)
J Mol Biol
, vol.313
, Issue.4
, pp. 673-681
-
-
Qian, J.1
Luscombe, N.M.2
Gerstein, M.3
-
6
-
-
0041718387
-
Birth and death of protein domains: A simple model of evolution explains power law behavior
-
137606 12379152 10.1186/1471-2148-2-18
-
Karev GP Wolf YI Rzhetsky AY Berezovskaya FS Koonin EV Birth and death of protein domains: A simple model of evolution explains power law behavior BMC Evol Biol 2002, 2:18 137606 12379152 10.1186/1471-2148-2-18
-
(2002)
BMC Evol Biol
, vol.2
, pp. 18
-
-
Karev, G.P.1
Wolf, Y.I.2
Rzhetsky, A.Y.3
Berezovskaya, F.S.4
Koonin, E.V.5
-
7
-
-
0037195119
-
Expanding protein universe and its origin from the biological Big Bang
-
137849 12384571 10.1073/pnas.202497999
-
Dokholyan NV Shakhnovich B Shakhnovich EI Expanding protein universe and its origin from the biological Big Bang Proc Natl Acad Sci U S A 2002, 99(22):14132-14136 137849 12384571 10.1073/pnas.202497999
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, Issue.22
, pp. 14132-14136
-
-
Dokholyan, N.V.1
Shakhnovich, B.2
Shakhnovich, E.I.3
-
8
-
-
0031876602
-
Correlation between the substitution rate and rate variation among sites in protein evolution
-
1460223 9649548
-
Zhang J Gu X Correlation between the substitution rate and rate variation among sites in protein evolution Genetics 1998, 149(3):1615-1625 1460223 9649548
-
(1998)
Genetics
, vol.149
, Issue.3
, pp. 1615-1625
-
-
Zhang, J.1
Gu, X.2
-
9
-
-
0027132974
-
Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
-
8277861
-
Yang Z Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites Mol Biol Evol 1993, 10(6):1396-1401 8277861
-
(1993)
Mol Biol Evol
, vol.10
, Issue.6
, pp. 1396-1401
-
-
Yang, Z.1
-
10
-
-
0033858110
-
From complete genomes to measures of substitution rate variability within and between proteins
-
310923 10899148 10.1101/gr.10.7.991
-
Grishin NV Wolf YI Koonin EV From complete genomes to measures of substitution rate variability within and between proteins Genome Res 2000, 10(7):991-1000 310923 10899148 10.1101/gr.10.7.991
-
(2000)
Genome Res
, vol.10
, Issue.7
, pp. 991-1000
-
-
Grishin, N.V.1
Wolf, Y.I.2
Koonin, E.V.3
-
11
-
-
33747872771
-
Origins and impact of constraints in evolution of gene families
-
1665636 17053091 10.1101/gr.5346206
-
Shakhnovich BE Koonin EV Origins and impact of constraints in evolution of gene families Genome Res 2006, 16(12):1529-1536 1665636 17053091 10.1101/gr.5346206
-
(2006)
Genome Res
, vol.16
, Issue.12
, pp. 1529-1536
-
-
Shakhnovich, B.E.1
Koonin, E.V.2
-
12
-
-
0035823119
-
Understanding hierarchical protein evolution from first principles
-
10.1006/jmbi.2001.4949 11545603
-
Dokholyan NV Shakhnovich EI Understanding hierarchical protein evolution from first principles J Mol Biol 2001, 312:289-307 10.1006/ jmbi.2001.4949 11545603
-
(2001)
J Mol Biol
, vol.312
, pp. 289-307
-
-
Dokholyan, N.V.1
Shakhnovich, E.I.2
-
13
-
-
0347033256
-
Role of duplicate genes in genetic robustness against null mutations
-
10.1038/nature01198 12511954
-
Gu Z Steinmetz LM Gu X Scharfe C Davis RW Li WH Role of duplicate genes in genetic robustness against null mutations Nature 2003, 421(6918):63-66 10.1038/nature01198 12511954
-
(2003)
Nature
, vol.421
, Issue.6918
, pp. 63-66
-
-
Gu, Z.1
Steinmetz, L.M.2
Gu, X.3
Scharfe, C.4
Davis, R.W.5
Li, W.H.6
-
14
-
-
2942615357
-
Upstream plasticity and downstream robustness in evolution of molecular networks
-
385226 15070432 10.1186/1471-2148-4-9
-
Maslov S Sneppen K Eriksen KA Yan KK Upstream plasticity and downstream robustness in evolution of molecular networks BMC Evol Biol 2004, 4:9 385226 15070432 10.1186/1471-2148-4-9
-
(2004)
BMC Evol Biol
, vol.4
, pp. 9
-
-
Maslov, S.1
Sneppen, K.2
Eriksen, K.A.3
Yan, K.K.4
-
15
-
-
0036890022
-
Rapid divergence in expression between duplicate genes inferred from microarray data
-
10.1016/S0168-9525(02)02837-8 12446139
-
Gu Z Nicolae D Lu H Li W Rapid divergence in expression between duplicate genes inferred from microarray data Trends in Genetics 2002, 18:609-613 10.1016/S0168-9525(02)02837-8 12446139
-
(2002)
Trends in Genetics
, vol.18
, pp. 609-613
-
-
Gu, Z.1
Nicolae, D.2
Lu, H.3
Li, W.4
-
16
-
-
0015219691
-
Fitting discrete probability distributions to evolutionary events
-
10.1126/science.172.3988.1089 5574514
-
Uzzell T Corbin KW Fitting discrete probability distributions to evolutionary events Science 1971, 172(988):1089-1096 10.1126/ science.172.3988.1089 5574514
-
(1971)
Science
, vol.172
, Issue.988
, pp. 1089-1096
-
-
Uzzell, T.1
Corbin, K.W.2
-
17
-
-
0345306751
-
The origins of genome complexity
-
10.1126/science.1089370 14631042
-
Lynch M Conery JS The origins of genome complexity Science 2003, 302(5649):1401-1404 10.1126/science.1089370 14631042
-
(2003)
Science
, vol.302
, Issue.5649
, pp. 1401-1404
-
-
Lynch, M.1
Conery, J.S.2
-
18
-
-
0030947344
-
Molecular evidence for an ancient duplication of the entire yeast genome
-
10.1038/42711 9192896
-
Wolfe KH Shields DC Molecular evidence for an ancient duplication of the entire yeast genome Nature 1997, 387(6634):708-713 10.1038/42711 9192896
-
(1997)
Nature
, vol.387
, Issue.6634
, pp. 708-713
-
-
Wolfe, K.H.1
Shields, D.C.2
-
19
-
-
0027284770
-
Evolution of the vertebrate genome as reflected in paralogous chromosomal regions in man and the house mouse
-
10.1006/geno.1993.1133 8486346
-
Lundin LG Evolution of the vertebrate genome as reflected in paralogous chromosomal regions in man and the house mouse Genomics 1993, 16:1-19 10.1006/geno.1993.1133 8486346
-
(1993)
Genomics
, vol.16
, pp. 1-19
-
-
Lundin, L.G.1
-
20
-
-
0036613237
-
Extensive genomic duplication during early chordate evolution
-
10.1038/ng884 12032567
-
McLysaght A Hokamp K Wolfe KH Extensive genomic duplication during early chordate evolution Nat Genet 2002, 31(2):200-204 10.1038/ng884 12032567
-
(2002)
Nat Genet
, vol.31
, Issue.2
, pp. 200-204
-
-
McLysaght, A.1
Hokamp, K.2
Wolfe, K.H.3
-
21
-
-
33750858684
-
Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia
-
10.1038/nature05230 17086204
-
Aury JM Jaillon O Duret L Noel B Jubin C Porcel BM Segurens B Daubin V Anthouard V Aiach N Arnaiz O Billaut A Beisson J Blanc I Bouhouche K Camara F Duharcourt S Guigo R Gogendeau D Katinka M Keller AM Kissmehl R Klotz C Koll F Le Mouel A Lepere G Malinsky S Nowacki M Nowak JK Plattner H Poulain J Ruiz F Serrano V Zagulski M Dessen P Betermier M Weissenbach J Scarpelli C Schachter V Sperling L Meyer E Cohen J Wincker P Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia Nature 2006, 444(7116):171-178 10.1038/ nature05230 17086204
-
(2006)
Nature
, vol.444
, Issue.7116
, pp. 171-178
-
-
Aury, J.M.1
Jaillon, O.2
Duret, L.3
Noel, B.4
Jubin, C.5
Porcel, B.M.6
Segurens, B.7
Daubin, V.8
Anthouard, V.9
Aiach, N.10
Arnaiz, O.11
Billaut, A.12
Beisson, J.13
Blanc, I.14
Bouhouche, K.15
Camara, F.16
Duharcourt, S.17
Guigo, R.18
Gogendeau, D.19
Katinka, M.20
Keller, A.M.21
Kissmehl, R.22
Klotz, C.23
Koll, F.24
Le Mouel, A.25
Lepere, G.26
Malinsky, S.27
Nowacki, M.28
Nowak, J.K.29
Plattner, H.30
Poulain, J.31
Ruiz, F.32
Serrano, V.33
Zagulski, M.34
Dessen, P.35
Betermier, M.36
Weissenbach, J.37
Scarpelli, C.38
Schachter, V.39
Sperling, L.40
Meyer, E.41
Cohen, J.42
Wincker, P.43
more..
-
25
-
-
39649119878
-
-
Wormbase http://www.wormbase.org
-
Wormbase
-
-
-
26
-
-
84872277144
-
-
ftp://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/
-
NCBI database ftp://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/
-
NCBI Database
-
-
-
27
-
-
84886298982
-
-
Entrez gene database http://www.ncbi.nlm.nih.gov/entrez/ query.fcgi?db=gene
-
Entrez Gene Database
-
-
-
28
-
-
0019887799
-
Identification of common molecular subsequences
-
10.1016/0022-2836(81)90087-5 7265238
-
Smith TF Waterman MS Identification of common molecular subsequences J Mol Biol 1981, 147:195-197 10.1016/0022-2836(81)90087-5 7265238
-
(1981)
J Mol Biol
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
29
-
-
70350674995
-
On the shortest spanning tree of a graph and the traveling salesman problem
-
10.2307/2033241
-
Kruskal J On the shortest spanning tree of a graph and the traveling salesman problem Proc Am Math Soc 1956, 7:48-50 10.2307/2033241
-
(1956)
Proc Am Math Soc
, vol.7
, pp. 48-50
-
-
Kruskal, J.1
|