How subunit coupling produces the γ-subunit rotary motion in F 1-ATPase

Proceedings of the National Academy of Sciences of the United States of America

Volumn 105, Issue 4, 2008, Pages 1192-1197

  Pu, Jingzhi ^a   Karplus, Martin ^a,b  

^a HARVARD UNIVERSITY   (United States)

^b UNIVERSITÉ LOUIS PASTEUR   (France)

Author keywords

ATP hydrolysis; Coarse grained; Mechanical coupling; Molecular motor; Tri site

Indexed keywords

PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE; MITOCHONDRIAL PROTEIN; MOLECULAR MOTOR; PROTEIN SUBUNIT; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATASE; SACCHAROMYCES CEREVISIAE PROTEIN;

CONFERENCE PAPER; CONFORMATIONAL TRANSITION; ENZYME ACTIVE SITE; ENZYME BINDING; ENZYME CONFORMATION; ENZYME KINETICS; HYDROLYSIS; MODEL; PHYSIOLOGY; PRIORITY JOURNAL; SIMULATION; TORQUE; ANIMAL; ARTICLE; BIOLOGY; CATALYSIS; CATTLE; CHEMICAL MODEL; CHEMISTRY; METABOLISM; METHODOLOGY; PROTEIN CONFORMATION; THERMODYNAMICS;

ANIMALS; CATALYSIS; CATTLE; COMPUTATIONAL BIOLOGY; HYDROLYSIS; MITOCHONDRIAL PROTEINS; MODELS, CHEMICAL; MOLECULAR MOTOR PROTEINS; PROTEIN CONFORMATION; PROTEIN SUBUNITS; PROTON-TRANSLOCATING ATPASES; SACCHAROMYCES CEREVISIAE PROTEINS; THERMODYNAMICS; TORQUE;

EID: 39549090640     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.0708746105     Document Type: Article

References (45)

1. Boyer PD (1997) Annu Rev Biochem 66:717-749.
2. Junge W, Lill H, Engelbrecht S (1997) Trends Biochem Sci 22:420-423.
3. Senior AE, Nadanaciva S, Weber J (2002) Biochim Biophys Acta Bioenerg 1553:188-211.
4. Gao Y, Yang W, Karplus M (2005) Cell 123:195-205.
5. Abrahams JP, Leslie AGW, Lutter R, Walker JE (1994) Nature 370:621-628.
6. Gibbons C, Montgomery MG, Leslie AGW, Walker JE (2000) Nat Struct Biol 7:1055-1061.
7. Itoh H, Takahashi A, Adachi K, Noji H, Yasuda R, Yoshida M, Kinosita K, Jr (2004) Nature 427:465-468.
8. Adachi K, Oiwa K, Nishizaka T, Furuike S, Noji H, Itoh H, Yoshida M, Kinosita K, Jr (2007) Cell 130:309-321.
9. Gao YQ, Yang W, Marcus RA, Karplus M (2003) Proc Natl Acad Sci USA 100:11339-11344.
10. Boyer PD (1979) in Membrane Bioenergetics, eds Lee CP, Schatz G, Ernster L (Addison-Wesley, Reading, MA), pp 461-479.
11. Boyer PD (1993) Biochim Biophys Acta Bioenerg 1140:215-250.
12. Bowler MW, Montgomery MG, Leslie AGW, Walker JE (2006) Proc Natl Acad Sci USA 103:8646-8649.
13. Kabaleeswaran V, Puri N, Walker JE, Leslie AGW, Mueller DM (2006) EMBO J 25:5433-5442.
14. Bowler MW, Montgomery MG, Leslie AGW, Walker JE (2007) J Biol Chem 282:14238-14242.
15. Noji H, Yasuda R, Yoshida M, Kinosita K, Jr (1997) Nature 386:299-302.
16. Yasuda R, Noji H, Yoshida M, Kinosita K, Jr, Itoh H (2001) Nature 140:898-904.
17. Shimabukuro K, Yasuda R, Muneyuki E, Hara KY, Kinosita K, Jr, Yoshida M (2003) Proc Natl Acad Sci USA 100:14731-14736.
18. Nishizaka T, Oiwa K, Noji H, Kimura S, Muneyuki E, Yushida M, Kinosita K, Jr (2004) Nat Struct Mol Biol 11:142-148.
19. Ariga T, Muneyuki E, Yoshida M (2007) Nat Struct Mol Biol 14:841-846.
20. Wang H, Oster G (1998) Nature 396:279-282.
21. Liu MS, Todd BD, Sadus RJ (2003) J Chem Phys 118:9890-9898.
22. Weber J, Wilke-Mounts S, Lee RSF, Grell E, Senior AE (1993) J Biol Chem 268:20126-20133.
23. Weber J, Senior AE (1997) Biochim Biophys Acta Bioenerg 1319:19-58.
24. Grüber G, Capaldi RA (1996) Biochemistry 35:3875-3879.
25. Yang W, Gao YQ, Cui Q, Ma J, Karplus M (2003) Proc Natl Acad Sci USA 100:874-879.
26. Mao HZ, Weber J (2007) Proc Natl Acad Sci USA 104:18478-18483.
27. Böckmann RA, Grubmüller H (2002) Nat Struct Biol 9:198-202.
28. Ma J, Flynn TC, Cui Q, Leslie AGW, Walker JE, Karplus M (2002) Structure 10:921-931.
29. Bandyopadhyay S, Allison WS (2004) Biochemistry 43:2533-2540.
30. Maragakis P, Karplus M (2005) J Mol Biol 352:807-822.
31. Schlitter J, Engels M, Krüger P (1994) J Mol Graphics 12:84-89.
32. Koga N, Takada S (2006) Proc Natl Acad Sci USA 103:5367-5372.
33. Menz RI, Walker JE, Leslie AGW (2001) Cell 106:331-341.
34. van der Vaart A, Karplus M (2005) J Chem Phys 122:114903.
35. Ross J (2006) J Phys Chem B 110:6987-6990.
36. Greene MD, Frasch WD (2003) J Biol Chem 278:51594-51598.
37. Bandyopadhyay S, Allison WS (2004) Biochemistry 43:9495-9501.
38. Gumbiowski K, Cherepanov D, Müller M, Pänke O, Promto P, Winkler S, Junge W, Engelbrecht S (2001) J Biol Chem 276:42287-42292.
39. Hossain MD, Furuike S, Maki Y, Adachi K, Ali MY, Huq M, Itoh H, Yoshida M, Kinosita K, Jr (2006) Biophys J 90:4195-4203.
40. Müller M, Gumbiowski K, Cherepanov DA, Winkler S, Junge W, Engelbrecht S, Pänke O (2004) Eur J Biochem 271:3914-3922.
41. Müller M, Pänke O, Junge W, Engelbrecht S (2002) J Biol Chem 277:23308-23313.
42. Dickson VK, Silvester JA, Fearnley IM, Leslie AGW, Walker JE (2006) EMBO J 25:2911-2918.
43. Walker JE, Dickson VK (2006) Biochim Biophys Acta Bioenerg 1757:286-296.
44. Brooks BR, Bruccoleri RE, Olafson BD, States DJ, Swaminathan S, Karplus M (1983) J Comput Chem 4:187-217.
45. Berendsen HJC, Postma JPM, van Gunsteren WF, DiNola A, Haak JR (1984) J Chem Phys 81:3684-3690.