Transcript-specific translational regulation in the unfolded protein response of Saccharomyces cerevisiae

FEBS Letters

Volumn 582, Issue 4, 2008, Pages 503-509

  Payne, Tom ^a   Hanfrey, Colin ^b   Bishop, Amy L ^a   Michael, Anthony J ^b   Avery, Simon V ^a   Archer, David B ^a  

^a UNIVERSITY OF NOTTINGHAM   (United Kingdom)

^b NORWICH RESEARCH PARK   (United Kingdom)

Author keywords

Microarray; Polysome; Saccharomyces; Stress; Translation; Unfolded protein response; UPR

Indexed keywords

FUNGAL PROTEIN; FUNGAL RNA; MESSENGER RNA; OXIDOREDUCTASE; PROTEIN DER1P; PROTEIN ERO1P; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR HAC1P; UNCLASSIFIED DRUG;

ARTICLE; GENETIC TRANSCRIPTION; MICROARRAY ANALYSIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SACCHAROMYCES CEREVISIAE; TRANSLATION REGULATION;

BASE SEQUENCE; DNA PRIMERS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTEIN BIOSYNTHESIS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TRANSCRIPTION, GENETIC;

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 39149141854     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2008.01.009     Document Type: Article

References (27)

1. Schröder M., and Kaufman R.J. The mammalian unfolded protein response. Annu. Rev. Biochem. 74 (2005) 739-789
2. Schröder M., and Kaufman R.J. ER stress and the unfolded protein response. Mutat. Res. 569 (2005) 29-63
3. Hershey J.W.B., and Merrick W.C. Pathway and mechanism of initiation of protein synthesis. In: Sonenberg N., Hershey J.W.B., and Mathews M.B. (Eds). Translational Control of Gene Expression (2000), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY 33-88
4. Johannes G., Carter M.S., Eisen M.B., Brown P.O., and Sarnow P. Identification of eukaryotic mRNAs that are translated at reduced cap binding complex eIF4F concentrations using a cDNA microarray. Proc. Natl. Acad. Sci. USA 96 (1999) 13118-13123
5. Hinnebusch A.G. Mechanism and regulation of initiator methionyl-tRNA binding to ribosomes. In: Sonenberg N., Hershey J.W.B., and Mathews M.B. (Eds). Translational Control of Gene Expression (2000), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY 185-244
6. Holcik M., and Sonenberg N. Translational control in stress and apoptosis. Nature Rev. Mol. Cell Biol. 6 (2005) 318-327
7. Hinnebusch A.G. Evidence for translational regulation of the activator of general amino-acid control in yeast. Proc. Natl. Acad. Sci. USA 81 (1984) 6442-6446
8. Mori K. Tripartite management of unfolded proteins in the endoplasmic reticulum. Cell 101 (2000) 451-454
9. Ron D., and Walter P. Signal integration in the endoplasmic reticulum unfolded protein response. Nat. Rev. Mol. Cell Biol. 8 (2007) 519-529
10. Hinnebusch A.G. Translational regulation of GCN4 and the general amino acid control of yeast. Annu. Rev. Microbiol. 59 (2005) 407-450
11. Iizuka N., Najita L., Franzusoff A., and Sarnow P. Cap-dependent and cap-independent translation by internal initiation of mRNAs in cell extracts prepared from Saccharomyces cerevisiae. Mol. Cell Biol. 14 (1994) 7322-7330
12. Zhou W., Edelman G.M., and Mauro V.P. Transcript leader regions of two Saccharomyces cerevisiae mRNAs contain internal ribosome entry sites that function in living cells. Proc. Natl. Acad. Sci. USA 98 (2001) 1531-1536
13. Ruegsegger U., Leber J.H., and Walter P. Block of HAC1 mRNA translation by long-range base pairing is released by cytoplasmic splicing upon induction of the unfolded protein response. Cell 107 (2001) 103-114
14. Travers K.J., Patil C.K., Wodicka L., Lockhart D.J., Weissman J.S., and Walter P. Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation. Cell 101 (2000) 249-258
15. Arava Y., Wang Y.L., Storey J.D., Liu C.L., Brown P.O., and Herschlag D. Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 100 (2003) 3889-3894
16. Chapman R.E., and Walter P. Translational attenuation mediated by an mRNA intron. Curr. Biol. 7 (1997) 850-859
17. Cox J.S., and Walter P. A novel mechanism for regulating activity of a transcription factor that controls the unfolded protein response. Cell 87 (1996) 391-404
18. Rand J.D., and Grant C.M. The thioredoxin system protects ribosomes against stress-induced aggregation. Mol. Biol. Cell 17 (2006) 387-401
19. Kuhn K.M., DeRisi J.L., Brown P.O., and Sarnow P. Global and specific translational regulation in the genomic response of Saccharomyces cerevisiae to a rapid transfer from a fermentable to a nonfermentable carbon source. Mol. Cell. Biol. 21 (2001) 916-927
20. Smirnova J.B., Selley J.N., Sanchez-Cabo F., Carroll K., Eddy A.A., McCarthy J.E.G., Hubbard S.J., Pavitt G.D., Grant C.M., and Ashe M.P. Global gene expression profiling reveals widespread yet distinctive translational responses to different eukaryotic translation initiation factor 2B-targeting stress pathways. Mol. Cell. Biol. 25 (2005) 9340-9349
21. Niwa M., Patil C.K., DeRisi J., and Walter P. Genome-scale approaches for discovering novel nonconventional splicing substrates of the Ire1p nuclease. Genome Biol. 6 (2004) R3
22. Ogawa N., and Mori K. Autoregulation of the HAC1 gene is required for sustained activation of the yeast unfolded protein response. Genes Cells 9 (2004) 95-104
23. Leber J.H., Bernales S., and Walter P. IRE1-independent gain control of the unfolded protein response. PLoS Biol. 2 (2004) 1197-1207
24. Kawahara T., Yanagi H., Yura T., and Mori K. Endoplasmic reticulum stress-induced mRNA splicing permits synthesis of transcription factor Hac1p/Ern4p that activates the unfolded protein response. Mol. Biol. Cell 8 (1997) 1845-1862
25. Valkonen M., Penttilä M., and Saloheimo M. Effects of inactivation and constitutive expression of the unfolded-protein response pathway on protein production in the yeast Saccharomyces cerevisiae. Appl. Environ. Microbiol. 69 (2003) 2065-2072
26. Inada M., and Guthrie C. Identification of Lhp1p-associated RNAs by microarray analysis in Saccharomyces cerevisiae reveals association with coding and noncoding RNAs. Proc. Natl. Acad. Sci. USA 101 (2004) 434-439
27. Preiss T., Baron-Benhamou J., Ansorge W., and Hentze M.W. Homodirectional changes in transcriptome composition and mRNA translation induced by rapamycin and heat shock. Nat. Struct. Biol. 10 (2003) 1039-1047