Phylogenetic analysis of the NS5 gene of dengue viruses isolated in Ecuador

Virus Research

Volumn 132, Issue 1-2, 2008, Pages 197-200

  Regato, Mary ^a   Recarey, Ricardo ^b   Moratorio, Gonzalo ^b   de Mora, Domenica ^a   Garcia Aguirre, Laura ^b   Gónzalez, Manuel ^a   Mosquera, Carlos ^a   Alava, Aracely ^a   Fajardo, Alvaro ^b   Alvarez, Macarena ^b   D' Andrea, Lucia ^b   Dubra, Ana ^b   Martínez, Mariela ^b   Khan, Baldip ^c   Cristina, Juan ^b  

^a Instituto Nacional de Higiene y Medicina Tropical   (Ecuador)

^b Facultad de Ciencias   (Uruguay)

^c INTERNATIONAL ATOMIC ENERGY AGENCY   (Austria)

Author keywords

Dengue virus; Ecuador; Evolution; NS5 gene

Indexed keywords

NONSTRUCTURAL PROTEIN 5;

ARTICLE; CONSENSUS SEQUENCE; DENGUE VIRUS; ECUADOR; GENE SEQUENCE; GENETIC VARIABILITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; UNINDEXED SEQUENCE; VIRAL GENETICS; VIRUS GENE; VIRUS ISOLATION;

DENGUE; DENGUE VIRUS; ECUADOR; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SOUTH AMERICA; VIRAL NONSTRUCTURAL PROTEINS;

DENGUE VIRUS; DENGUE VIRUS GROUP; FLAVIVIRIDAE; FLAVIVIRUS;

EID: 39149128315     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2007.10.012     Document Type: Article

References (25)

1. Aquino V.H., Anatriello E., Goncalves P.F., Da Silva E.V., Vasconcelos P.F., Vieira D.S., Batista W.C., Bobadilla M.L., Vazquez C., Moran M., and Figueiredo L.T. Molecular epidemiology of dengue type 3 virus in Brazil and Paraguay, 2002-2004. Am. J. Trop. Med. Hyg. 75 (2006) 710-715
2. Aviles G., Meissner J., Mantovani R., and St. Jeor S. Complete coding sequences of dengue-1 viruses from Paraguay and Argentina. Virus Res. 98 (2003) 75-82
3. Ayers M., Adachi D., Johnson G., Andonova M., Drebot M., and Tellier R. A single tube RT-PCR assay for the detection of mosquito-borne flaviviruses. J. Virol Methods 135 (2006) 235-239
4. Baleotti F.G., Moreli M.L., and Figueiredo L.T. Brazilian Flavivirus phylogeny based on NS5. Mem. Inst. Oswaldo Cruz 98 (2003) 379-382
5. Barrero P.R., and Mistchenko A.S. Complete genome sequencing of dengue virus type 1 isolated in Buenos Aires. Argent. Virus Res. 101 (2004) 135-145
6. Batista W.C., Kashima S., Marques A.C., and Figueiredo L.T. Phylogenetic analysis of Brazilian Flavivirus using nucleotide sequences of parts of NS5 and 3′ non-coding regions. Virus Res. 75 (2001) 35-42
7. Clyde K., Kyle J.L., and Harris E. Recent advances in deciphering viral and host determinants of Dengue virus replication and pathogenesis. J. Virol. 80 (2006) 11418-11431
8. Dussart P., Lavergne A., Lagathu G., Lacoste V., Martial J., Morvan J., and Cesaire R. Reemergence of dengue virus type 4, French Antilles and French Guiana, 2004-2005. Emerg. Infect. Dis. 12 (2006) 1748-1751
9. Guindon S., Lethiec F., Duroux P., and Gascuel O. PHYML online-a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res 33 web server issue (2005) W557-W559
10. Holmes E.C., and Twiddy S.S. The origin, emergence and evolutionary genetics of dengue virus. Infect. Genet. Evol. 3 (2003) 19-28
11. Keane T.M., Creevey C.J., Pentony M.M., Naughton T.J., and McInerney J.O. Assessment of methods of amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. BMC Evol. Biol. 6 (2006) 29
12. Kuno G., Chang G.J., Tsuchiya R., Karabatsos N., and Cropp C.B. Phylogeny of the Genus Flavivirus. J. Virol. 72 (1998) 73-83
13. Kwok S., and Higuchi R. Avoiding false positives with PCR. Nature 339 (1989) 237-238
14. Lanciotti R.S., Gubler D.J., and Trent D.W. Molecular evolution and phylogeny of dengue-4 viruses. J. Gen. Virol. 78 (1997) 2279-2286
15. Lole K.S., Bollinger R.C., Parnjape R.S., Gadkari D., and Kulkarni S.S. Full-length human immunodeficiency virus type I genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 73 (1999) 152-160
16. Messer W.B., Gubler D.J., Harris E., Sivananthan K., and de Silva A.M. Emergence and global spread of a dengue serotype 3, subtype III virus. Emerg. Infect. Dis. 9 (2003) 800-809
17. Peyrefitte C.N., Coussinier-Paris P., Mercier-Perennec V., Bessaud M., Martial J., Kenane N., Durand J.P., and Tolou H.J. Genetic characterization of newly reintroduced dengue virus type 3 in Martinique (French West Indies). J. Clin. Microbiol. 41 (2003) 5195-5198
18. Peyrefitte C.N., Pastorino B.A.M., Bessaud M., Gravier P., Tock F., Couissinier-Paris P., Martial J., Huc-Anais P., and Cesaire R. Dengue type 3 virus, Saint Martin, 2003-2004. Emerg. Infect. Dis. 11 (2005) 757-761
19. Ricco-Hesse R. Microevolution and virulence of dengue viruses. Adv. Virus Res. 59 (2003) 315-341
20. Rice C.M. Flaviviridae: the viruses and their replication. In: Fields B.N., Knipe D.M., Howley P.M., Chanock R.M., Melnick J.L., and Monath T.P. (Eds). Virology (1996), Lippincott-Raven, Philadelphia 931-1034
21. Salminen M.O., Carr J.K., Burke D.S., and McCutchan D.S. Identification of breakpoints in intergenotypic recombinants of HIV type I by bootscanning. AIDS Res. Hum. Retroviruses 11 (1995) 1423-1425
22. Thomas S.J., Strickman D., and Vaughn D.W. Dengue epidemiology: virus epidemiology, ecology and emergence. Adv. Virus Res. 61 (2003) 235-289
23. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acid Res. 22 (1994) 4673-4680
24. World Health Organization, 2002. Dengue and dengue haemorrhagic fever. Fact sheet no. 117. http://www.who.int/mediacentre/factsheets/fs117/en/. World Health Organization, Geneva, Switzerland.
25. Zhang C., Mammen M.P., Chinnawirotpisan P., Klungthong C., Rodpradit P., Nisalak A., Vaughn D.W., Nimmannitya S., Kalayanarooj S., and Holmes E.C. Structure and age of genetic diversity of dengue virus type 2 in Thailand. J. Gen. Virol. 87 (2006) 873-883