Development of a method for concentrating and detecting rotavirus in oysters

International Journal of Food Microbiology

Volumn 122, Issue 1-2, 2008, Pages 204-210

  Kittigul, Leera ^a   Pombubpa, Kannika ^a   Rattanatham, Tippawan ^a   Diraphat, Pornphan ^a   Utrarachkij, Fuangfa ^a   Pungchitton, Supornvit ^a   Khamrin, Pattara ^b   Ushijima, Hiroshi ^b  

^a MAHIDOL UNIVERSITY   (Thailand)

^b GRADUATE SCHOOL OF MEDICINE   (Japan)

Author keywords

Oyster; Rotavirus; RT nested PCR; Virus concentration method

Indexed keywords

AGAR; CHLOROFORM; MACROGOL;

ADSORPTION; ANALYTIC METHOD; ARTICLE; CENTRIFUGATION; CONTROLLED STUDY; ELUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; OYSTER; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA ANALYSIS; ROTAVIRUS; SHELLFISH; THAILAND; VIRAL CONTAMINATION; VIRUS CONCENTRATION METHOD; VIRUS DETECTION;

ADSORPTION; ANIMALS; COLONY COUNT, MICROBIAL; CONSUMER PRODUCT SAFETY; DISEASE OUTBREAKS; DNA, VIRAL; FOOD CONTAMINATION; HUMANS; HYDROGEN-ION CONCENTRATION; OSTREIDAE; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; ROTAVIRUS; SENSITIVITY AND SPECIFICITY; SHELLFISH;

BIVALVIA; CRASSOSTREA BELCHERI; HUMAN ROTAVIRUS A; OSTREIDAE; ROTAVIRUS; ROTAVIRUS A;

EID: 39149128266     PISSN: 01681605     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijfoodmicro.2007.11.071     Document Type: Article

References (33)

1. Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J. Basic local alignment search tool. Journal of Molecular Biology 215 (1990) 403-410
2. Boxman I.L., Tilburg J.J., Te Loeke N.A., Vennema H., Jonker K., de Boer E., and Koopmans M. Detection of noroviruses in shellfish in the Netherlands. International Journal of Food Microbiology 108 (2006) 391-396
3. Butz A.M., Fosarelli P., Dick J., Cusack T., and Yolken R. Prevalence of rotavirus on high-risk fomites in day-care facilities. Pediatrics 92 (1993) 202-205
4. Croci L., Ciccozzi M., De Medici D., Di Pasquale S., Fiore A., Mele A., and Toti L. Inactivation of hepatitis A virus in heat-treated mussels. Journal of Applied Microbiology 87 (1999) 884-888
5. Croci L., Losio M.N., Suffredini E., Pavoni E., Di Pasquale S., Fallacara F., and Arcangeli G. Assessment of human enteric viruses in shellfish from the northern Adriatic sea. International Journal of Food Microbiology 114 (2007) 252-257
6. De Medici D., Croci L., Di Pasquale S., Fiore A., and Toti L. Detecting the presence of infectious hepatitis A virus in molluscs positive to RT-nested-PCR. Letters in Applied Microbiology 33 (2001) 362-366
7. Formiga-Cruz M., Hundesa A., Clemente-Casares P., Albinana-Gimenez N., Allard A., and Girones R. Nested multiplex PCR assay for detection of human enteric viruses in shellfish and sewage. Journal of Virological Methods 125 (2005) 111-118
8. Gallimore C.I., Pipkin C., Shrimpton H., Green A.D., Pickford Y., McCartney C., Sutherland G., Brown D.W., and Gray J.J. Detection of multiple enteric virus strains within a foodborne outbreak of gastroenteritis: an indication of the source of contamination. Epidemiology and Infection 133 (2005) 41-47
9. Gilgen M., Germann D., Luthy J., and Hubner P. Three-step isolation method for sensitive detection of enterovirus, rotavirus, hepatitis A virus, and small round structured viruses in water samples. International Journal of Food Microbiology 37 (1997) 189-199
10. Gratacap-Cavallier B., Genoulaz O., Brengel-Pesce K., Soule H., Innocenti-Francillard P., Bost M., Gofti L., Zmirou D., and Seigneurin J.M. Detection of human and animal rotavirus sequences in drinking water. Applied and Environmental Microbiology 66 (2000) 2690-2692
11. Hitchins A.D., Feng P., Watkins W.D., Rippey S.R., and Chandler L.A. Escherichia coli and the coliform bacteria. Food and Drug Administration. Bacteriological Analytical Manual. 8th ed. (1998), AOAC international, Gaitherburg 4.01-4.29
12. Jiraphongsa C., Bresee J.S., Pongsuwanna Y., Kluabwang P., Poonawagul U., Arporntip P., Kanoksil M., Premsri N., Intusoma U., and Rotavirus Surveillance Project Thailand Study Group. Epidemiology and burden of rotavirus diarrhea in Thailand: results of sentinel surveillance. The Journal of Infectious Diseases 192 Suppl 1 (2005) S87-S93
13. Khamrin P., Peerakome S., Wongsawasdi L., Tonusin S., Sornchai P., Maneerat V., Khamwan C., Yagyu F., Okitsu S., Ushijima H., and Maneekarn N. Emergence of human G9 rotavirus with an exceptionally high frequency in children admitted to hospital with diarrhea in Chiang Mai, Thailand. Journal of Medical Virology 78 (2006) 273-280
14. Kingsley D.H., and Richards G.P. Persistence of hepatitis A virus in oysters. Journal of Food Protection 66 (2003) 331-334
15. Kittigul L., Raengsakulrach B., Siritantikorn S., Kanyok R., Utrarachkij F., Diraphat P., Thirawuth V., Siripanichgon K., Pungchitton S., Chitpirom K., Chaichantanakit N., and Vathanophas K. Detection of poliovirus, hepatitis A virus and rotavirus from sewage and water samples. Southeast Asian Journal of Tropical Medicine and Public Health 31 (2000) 41-46
16. Kittigul L., Khamoun P., Sujirarat D., Utrarachkij F., Chitpirom K., Chaichantanakit N., and Vathanophas K. An improved method for concentrating rotavirus from water samples. Memorias do Instituto Oswaldo Cruz 96 (2001) 815-821
17. Kittigul L., Ekchaloemkiet S., Utrarachkij F., Siripanichgon K., Sujirarat D., Pungchitton S., and Boonthum A. An efficient virus concentration method and RT-nested PCR for detection of rotaviruses in environmental water samples. Journal of Virological Methods 124 (2005) 117-122
18. Koopmans M., and Duizer E. Foodborne viruses: an emerging problem. International Journal of Food Microbiology 90 (2004) 23-41
19. Kumar S., Tamura K., and Nei M. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics 5 (2004) 150-163
20. Le Guyader F., Haugarreau L., Miossec L., Dubois E., and Pommepuy M. Three-year study to assess human enteric viruses in shellfish. Applied and Environmental Microbiology 66 (2000) 3241-3248
21. Le Guyader F.S., Bon F., DeMedici D., Parnaudeau S., Bertone A., Crudeli S., Doyle A., Zidane M., Suffredini E., Kohli E., Maddalo F., Monini M., Gallay A., Pommepuy M., Pothier P., and Ruggeri F.M. Detection of multiple noroviruses associated with an international gastroenteritis outbreak linked to oyster consumption. Journal of Clinical Microbiology 44 (2006) 3878-3882
22. Lees D. Viruses and bivalve shellfish. International Journal of Food Microbiology 59 (2000) 81-116
23. Loisy F., Atmar R.L., Le Saux J.C., Cohen J., Caprais M.P., Pommepuy M., and Le Guyader F.S. Use of rotavirus virus-like particles as surrogates to evaluate virus persistence in shellfish. Applied and Environmental Microbiology 71 (2005) 6049-6053
24. Maneekarn N., and Ushijima H. Epidemiology of rotavirus infection in Thailand. International Pediatrics 42 (2000) 415-421
25. Mullendore J.L., Sobsey M.D., and Shieh Y.C. Improved method for the recovery of hepatitis A virus from oysters. Journal of Virological Methods 94 (2001) 25-35
26. Ramachandran M., Kirkwood C.D., Unicomb L., Cunliffe N.A., Ward R.L., Bhan M.K., Clark H.F., Glass R.I., and Gentsch J.R. Molecular characterization of serotype G9 rotavirus strains from a global collection. Virology 278 (2000) 436-444
27. Ribao C., Torrado I., Vilarino M.L., and Romalde J.L. Assessment of different commercial RNA-extraction and RT-PCR kits for detection of hepatitis A virus in mussel tissues. Journal of Virological Methods 115 (2004) 177-182
28. Sanchez G., Pinto R.M., Vanaclocha H., and Bosch A. Molecular characterization of hepatitis A virus isolates from a transcontinental shellfish-borne outbreak. Journal of Clinical Microbiology 40 (2002) 4148-4155
29. Schultz A.C., Saadbye P., Hoorfar J., and Norrung B. Comparison of methods for detection of norovirus in oysters. International Journal of Food Microbiology 114 (2007) 352-356
30. Shieh Y.C., Khudyakov Y.E., Xia G., Ganova-Raeva L.M., Khambaty F.M., Woods J.W., Veazey J.E., Motes M.L., Glatzer M.B., Bialek S.R., and Fiore A.E. Molecular confirmation of oysters as the vector for hepatitis A in a 2005 multistate outbreak. Journal of Food Protection 70 (2007) 145-150
31. Soule H., Genoulaz O., Gratacap-Cavallier B., Mallaret M.R., Morand P., Francois P., Luu Duc Bin D., Charvier A., Bost-Bru C., and Seigneurin J.M. Monitoring rotavirus environmental contamination in a pediatric unit using polymerase chain reaction. Infection Control and Hospital Epidemiology 20 (1999) 432-434
32. Sunen E., Casas N., Moreno B., and Zigorraga C. Comparison of two methods for the detection of hepatitis A virus in clam samples (Tapes spp.) by RT-nested PCR. International Journal of Food Microbiology 91 (2004) 147-154
33. van Zyl W.B., Page N.A., Grabow W.O., Steele A.D., and Taylor M.B. Molecular epidemiology of group A rotaviruses in water sources and selected raw vegetables in southern Africa. Applied and Environmental Microbiology 72 (2006) 4554-4560