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Volumn 148, Issue 1-2, 2008, Pages 96-105

Investigating the sensitivity of a fluorescence-based microarray for the detection of fruit-tree viruses

Author keywords

Different labelling; Fruit tree viruses; Microchip; Sensitivity

Indexed keywords

DEOXYURIDINE TRIPHOSPHATE PYROPHOSPHATASE; OLIGONUCLEOTIDE; VIRUS DNA;

EID: 39149127613     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2007.10.018     Document Type: Article
Times cited : (17)

References (43)
  • 1
    • 23844439307 scopus 로고    scopus 로고
    • The 18S rDNA sequence of Synchytrium endobioticum and its utility in microarrays for the simultaneous detection of fungal and viral pathogens of potato
    • Abdullahi I., Koerbler M., Stachewicz H., and Winter S. The 18S rDNA sequence of Synchytrium endobioticum and its utility in microarrays for the simultaneous detection of fungal and viral pathogens of potato. Appl. Microbiol. Biot. 68 3 (2005) 368-375
    • (2005) Appl. Microbiol. Biot. , vol.68 , Issue.3 , pp. 368-375
    • Abdullahi, I.1    Koerbler, M.2    Stachewicz, H.3    Winter, S.4
  • 2
    • 34047271952 scopus 로고    scopus 로고
    • Hybridization of genomic DNA to microarrays: a challenge for the analysis of environmental samples
    • Avarre J.Ch., de Lajudiea P., and Bénaa G. Hybridization of genomic DNA to microarrays: a challenge for the analysis of environmental samples. J. Microbiol. Meth. 69 2 (2007) 242-248
    • (2007) J. Microbiol. Meth. , vol.69 , Issue.2 , pp. 242-248
    • Avarre, J.Ch.1    de Lajudiea, P.2    Bénaa, G.3
  • 3
    • 22144483355 scopus 로고    scopus 로고
    • Oligonucleotide-based microarrays: a new improvement in microarrays detection of plant viruses
    • Bystricka D., Lenz O., Mraz I., Piherova L., Kmoch S., and Sip M. Oligonucleotide-based microarrays: a new improvement in microarrays detection of plant viruses. J. Virol. Methods 128 (2005) 176-182
    • (2005) J. Virol. Methods , vol.128 , pp. 176-182
    • Bystricka, D.1    Lenz, O.2    Mraz, I.3    Piherova, L.4    Kmoch, S.5    Sip, M.6
  • 4
    • 0037374617 scopus 로고    scopus 로고
    • Detection of potato viruses using microarrays technology: towards a generic method for plant viral disease diagnosis
    • Boonham N., Walsh K., Smith P., Madagan K., Graham I., and Barker I. Detection of potato viruses using microarrays technology: towards a generic method for plant viral disease diagnosis. J. Virol. Methods 108 2 (2003) 181-187
    • (2003) J. Virol. Methods , vol.108 , Issue.2 , pp. 181-187
    • Boonham, N.1    Walsh, K.2    Smith, P.3    Madagan, K.4    Graham, I.5    Barker, I.6
  • 6
    • 0036308528 scopus 로고    scopus 로고
    • Detection and genotyping of human group A rotaviruses by oligonucleotide microarray hybridization
    • Chizhikov V., Wagner M., Ivshina A., Hoshino Y., Kapikian A.Z., and Chumakov K. Detection and genotyping of human group A rotaviruses by oligonucleotide microarray hybridization. J. Clin. Microbiol. 40 7 (2002) 2398-2407
    • (2002) J. Clin. Microbiol. , vol.40 , Issue.7 , pp. 2398-2407
    • Chizhikov, V.1    Wagner, M.2    Ivshina, A.3    Hoshino, Y.4    Kapikian, A.Z.5    Chumakov, K.6
  • 7
    • 33746621649 scopus 로고    scopus 로고
    • Design of microarray probes for virus identification and detection of emerging viruses at the genus level
    • Chou C.C., Lee T.T., Chen C.H., Hsiao H.Y., Lin Y.L., Ho M.S., Yang P.C., and Peck K. Design of microarray probes for virus identification and detection of emerging viruses at the genus level. BMC Bioinformatics 28 7 (2006) 232
    • (2006) BMC Bioinformatics , vol.28 , Issue.7 , pp. 232
    • Chou, C.C.1    Lee, T.T.2    Chen, C.H.3    Hsiao, H.Y.4    Lin, Y.L.5    Ho, M.S.6    Yang, P.C.7    Peck, K.8
  • 10
    • 0032103217 scopus 로고    scopus 로고
    • Differential gene expression in arabidopsis monitored using cDNA arrays
    • Desprez T., Amselem J., Caboche M., and Hofte H. Differential gene expression in arabidopsis monitored using cDNA arrays. Plant J. 14 (1998) 643-652
    • (1998) Plant J. , vol.14 , pp. 643-652
    • Desprez, T.1    Amselem, J.2    Caboche, M.3    Hofte, H.4
  • 11
    • 33644943439 scopus 로고    scopus 로고
    • Comparison of different labelling methods for the production of labelled target DNA for microarrays hybridization
    • Franke-Whittle I., Klammer S.H., Mayrhofer S., and Insam H. Comparison of different labelling methods for the production of labelled target DNA for microarrays hybridization. J. Microbiol. Meth. 65 (2006) 117-126
    • (2006) J. Microbiol. Meth. , vol.65 , pp. 117-126
    • Franke-Whittle, I.1    Klammer, S.H.2    Mayrhofer, S.3    Insam, H.4
  • 13
    • 33745157895 scopus 로고    scopus 로고
    • Development of a sensitive and specific assay combining multiplex PCR and DNA microarray primer extension to detect high-risk mucosal human papillomavirus types
    • Gheit T., Landi S., Gemignani F., Snijders P.J., Vaccarella S., Franceschi S., Canzian F., and Tommasino M. Development of a sensitive and specific assay combining multiplex PCR and DNA microarray primer extension to detect high-risk mucosal human papillomavirus types. J. Clin. Microbiol. 44 6 (2006) 2025-2031
    • (2006) J. Clin. Microbiol. , vol.44 , Issue.6 , pp. 2025-2031
    • Gheit, T.1    Landi, S.2    Gemignani, F.3    Snijders, P.J.4    Vaccarella, S.5    Franceschi, S.6    Canzian, F.7    Tommasino, M.8
  • 14
    • 33947255138 scopus 로고    scopus 로고
    • Specific and quantitative detection of PCR products from Clostridium piliforme, Helicobacter bilis, H-hepaticus, and mouse hepatitis virus infected mouse samples using a newly developed electrochemical DNA chip
    • Goto K., Horiuchi H., Shinohara H., Motegi K., Hashimoto K., Hongo S., Gemma N., Hayashimoto N., Itoh T., and Takakura A. Specific and quantitative detection of PCR products from Clostridium piliforme, Helicobacter bilis, H-hepaticus, and mouse hepatitis virus infected mouse samples using a newly developed electrochemical DNA chip. J. Microbiol. Meth. 69 1 (2007) 93-99
    • (2007) J. Microbiol. Meth. , vol.69 , Issue.1 , pp. 93-99
    • Goto, K.1    Horiuchi, H.2    Shinohara, H.3    Motegi, K.4    Hashimoto, K.5    Hongo, S.6    Gemma, N.7    Hayashimoto, N.8    Itoh, T.9    Takakura, A.10
  • 15
    • 33745902505 scopus 로고    scopus 로고
    • Applicability of microarray technique for the detection of noro- and astroviruses
    • Jaaskelainen A.J., and Maunula L. Applicability of microarray technique for the detection of noro- and astroviruses. J. Virol. Methods 136 1-2 (2006) 210-216
    • (2006) J. Virol. Methods , vol.136 , Issue.1-2 , pp. 210-216
    • Jaaskelainen, A.J.1    Maunula, L.2
  • 16
  • 17
    • 0344629203 scopus 로고    scopus 로고
    • Bias and artifacts in multitemplate polymerase chain reactions
    • Kanagawa T. Bias and artifacts in multitemplate polymerase chain reactions. J. Biosci. Bioeng. 96 4 (2003) 317-323
    • (2003) J. Biosci. Bioeng. , vol.96 , Issue.4 , pp. 317-323
    • Kanagawa, T.1
  • 18
    • 0037387125 scopus 로고    scopus 로고
    • Detection of hepatitis B virus DNA in sera from patients with chronic hepatitis B virus infection by DNA microarray method
    • Kawaguchi K., Kaneko S., Honda M., Kawai H.F., Shirota Y., and Kobayashi K. Detection of hepatitis B virus DNA in sera from patients with chronic hepatitis B virus infection by DNA microarray method. J. Clin. Microbiol. 41 4 (2003) 1701-1704
    • (2003) J. Clin. Microbiol. , vol.41 , Issue.4 , pp. 1701-1704
    • Kawaguchi, K.1    Kaneko, S.2    Honda, M.3    Kawai, H.F.4    Shirota, Y.5    Kobayashi, K.6
  • 19
    • 0034669668 scopus 로고    scopus 로고
    • Assessment of the sensitivity and specificity of oligonucleotide (50 mer) microarrays
    • Kane M.D., Jatkoe T.A., Stumpf C.R., Lu J., Thomas J.D., and Madore S.J. Assessment of the sensitivity and specificity of oligonucleotide (50 mer) microarrays. Nucleic Acids Res. 28 22 (2000) 4552-4557
    • (2000) Nucleic Acids Res. , vol.28 , Issue.22 , pp. 4552-4557
    • Kane, M.D.1    Jatkoe, T.A.2    Stumpf, C.R.3    Lu, J.4    Thomas, J.D.5    Madore, S.J.6
  • 21
    • 0242348846 scopus 로고    scopus 로고
    • Detection and discrimination of orthopoxviruses using microarrays of immobilized oligonucleotides
    • Laassri M., Chizhikov V., Mikheev M., Shchelkunov S., and Chumakov K. Detection and discrimination of orthopoxviruses using microarrays of immobilized oligonucleotides. J. Virol. Methods 112 1-2 (2003) 67-78
    • (2003) J. Virol. Methods , vol.112 , Issue.1-2 , pp. 67-78
    • Laassri, M.1    Chizhikov, V.2    Mikheev, M.3    Shchelkunov, S.4    Chumakov, K.5
  • 23
    • 0038580828 scopus 로고    scopus 로고
    • Plant virus cDNA chip hybridization for detection and differentiation of four cucurbit-infecting Tobamoviruses
    • Lee G.P., Min B.E., Kim C.S., Choi S.H., Harn C.H., Kim S.U., and Ryu K.H. Plant virus cDNA chip hybridization for detection and differentiation of four cucurbit-infecting Tobamoviruses. J. Virol. Methods 110 1 (2003) 19-24
    • (2003) J. Virol. Methods , vol.110 , Issue.1 , pp. 19-24
    • Lee, G.P.1    Min, B.E.2    Kim, C.S.3    Choi, S.H.4    Harn, C.H.5    Kim, S.U.6    Ryu, K.H.7
  • 25
    • 33744948541 scopus 로고    scopus 로고
    • Array-based nano-amplification technique was applied in detection of hepatitis E virus
    • Liu H., Cao X., Yang Y., Liu M.G., and Wang Y.F. Array-based nano-amplification technique was applied in detection of hepatitis E virus. J. Biochem. Mol. Biol. 39 3 (2006) 247-252
    • (2006) J. Biochem. Mol. Biol. , vol.39 , Issue.3 , pp. 247-252
    • Liu, H.1    Cao, X.2    Yang, Y.3    Liu, M.G.4    Wang, Y.F.5
  • 27
    • 0036795787 scopus 로고    scopus 로고
    • Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment
    • Loy A., Lehner A., Lee N., Adamczyk J., Meier H., Ernst J., Schleifer K.H., and Wagner M. Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment. Appl. Environ. Microbiol. 68 (2002) 5064-5081
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 5064-5081
    • Loy, A.1    Lehner, A.2    Lee, N.3    Adamczyk, J.4    Meier, H.5    Ernst, J.6    Schleifer, K.H.7    Wagner, M.8
  • 28
    • 33746532479 scopus 로고    scopus 로고
    • Comparison of commercial probe labeling kits for microarray: towards quality assurance and consistency of reactions
    • Lynch J.L., Desilva C.J., Peeva V.K., and Swanson N.R. Comparison of commercial probe labeling kits for microarray: towards quality assurance and consistency of reactions. Anal. Biochem. 355 (2006) 224-231
    • (2006) Anal. Biochem. , vol.355 , pp. 224-231
    • Lynch, J.L.1    Desilva, C.J.2    Peeva, V.K.3    Swanson, N.R.4
  • 29
    • 34548057760 scopus 로고    scopus 로고
    • A novel sample labelling method with restriction display PCR for 60-mer oligonucleotide microarrays
    • Mo X.Y., Ma W.L., Shi R., Zhang B., Xu Q.L., Zhang H.Y., and Zheng W.L. A novel sample labelling method with restriction display PCR for 60-mer oligonucleotide microarrays. J. First Mil. Med. Univ. 25 9 (2005) 1081-1094
    • (2005) J. First Mil. Med. Univ. , vol.25 , Issue.9 , pp. 1081-1094
    • Mo, X.Y.1    Ma, W.L.2    Shi, R.3    Zhang, B.4    Xu, Q.L.5    Zhang, H.Y.6    Zheng, W.L.7
  • 31
    • 27844596763 scopus 로고    scopus 로고
    • Fluorescence-based assay formats and signal amplification strategies for DNA microarray analysis
    • Park H.G., Song J.Y., Park K.H., and Kim M.H. Fluorescence-based assay formats and signal amplification strategies for DNA microarray analysis. Chem. Eng. Sci. 61 3 (2006) 954-965
    • (2006) Chem. Eng. Sci. , vol.61 , Issue.3 , pp. 954-965
    • Park, H.G.1    Song, J.Y.2    Park, K.H.3    Kim, M.H.4
  • 32
    • 2642525491 scopus 로고    scopus 로고
    • Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterio-plankton
    • Peplies J., Lau S.Ch.K., Pernthaler J., Amann R., and Glockner F.O. Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterio-plankton. Environ. Microbiol. 6 (2004) 638-645
    • (2004) Environ. Microbiol. , vol.6 , pp. 638-645
    • Peplies, J.1    Lau, S.Ch.K.2    Pernthaler, J.3    Amann, R.4    Glockner, F.O.5
  • 33
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena M., Shalon D., Davis R.W., and Brown P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270 20 (1995) 467-470
    • (1995) Science , vol.270 , Issue.20 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 37
    • 0034625797 scopus 로고    scopus 로고
    • A novel, sensitive detection system for high-density microarrays using dendrimer technology
    • Stears R.L., Getts R.C., and Gullans S.R. A novel, sensitive detection system for high-density microarrays using dendrimer technology. Physiol. Genom. 3 (2000) 93-99
    • (2000) Physiol. Genom. , vol.3 , pp. 93-99
    • Stears, R.L.1    Getts, R.C.2    Gullans, S.R.3
  • 38
    • 31644442691 scopus 로고    scopus 로고
    • Application of restriction display PCR technique in the preparation of cDNA microarray probes
    • Sun Z.H., Ma W.L., Zhang B., Peng Y.F., and Zheng W.L. Application of restriction display PCR technique in the preparation of cDNA microarray probes. World J. Gastroenterol. 11 48 (2005) 7574-7579
    • (2005) World J. Gastroenterol. , vol.11 , Issue.48 , pp. 7574-7579
    • Sun, Z.H.1    Ma, W.L.2    Zhang, B.3    Peng, Y.F.4    Zheng, W.L.5
  • 39
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgings D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgings, D.G.2    Gibson, T.J.3
  • 43
    • 28544450415 scopus 로고    scopus 로고
    • Position of the fluorescent label is a crucial factor determining signal intensity in microarray hybridizations
    • Zhang L., Hurek T., and Reinhold-Hurek B. Position of the fluorescent label is a crucial factor determining signal intensity in microarray hybridizations. Nucleic Acids Res. 33 19 (2005) e166
    • (2005) Nucleic Acids Res. , vol.33 , Issue.19
    • Zhang, L.1    Hurek, T.2    Reinhold-Hurek, B.3


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