Characterization of a U.S. isolate of Beet black scorch virus

Phytopathology

Volumn 97, Issue 10, 2007, Pages 1245-1254

  Weiland, John J ^a   Van Winkle, David ^a   Edwards, Michael C ^a   Larson, Rebecca L ^a   Shelver, Weilin L ^a   Freeman, Thomas P ^b   Liu, Hsing Yeh ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b NORTH DAKOTA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACER PENSYLVANICUM; AMARANTHACEAE; BEET BLACK SCORCH VIRUS; BETA VULGARIS SUBSP. VULGARIS; NECROVIRUS; NICOTIANA BENTHAMIANA; TETRAGONIA EXPANSA;

EID: 39149126079     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-97-10-1245     Document Type: Article

References (34)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
2. Atabekov, J. G., Rodionova, N. P., Karpova, O. V., Kozlovsky, S. V., Novikov, V. K., and Arkhipenko, M. V. 2001. Translational activation of encapsidated Potato virus X RNA by coat protein phosphorylation. Virology 286:466-474.
3. Bjellqvist, B., Hughes, G. J., Pasquali, C., Paquet, N., Ravier, F., Sanchez, J.-C., Frutiger, S., and Hochstrasser, D. F. 1993. The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences. Electrophoresis 14:1023-1031.
4. Blom, N., Gammeltoft, S., and Brunak, S. 1999. Sequence- and structure-based prediction of eukaryotic protein phosphorylation sites. J. Mol. Biol. 294:1351-1362.
5. Bruenn, J. A. 2003. A structural and primary sequence comparison of the viral RNA-dependent RNA polymerases. Nucleic Acids Res. 31:1821-1829.
6. Cai, Z. N., Chen, D. H., Wu, M. S., Cui, X. M., Yu, J. L., and Liu, Y. 1993. Identification of pathogenic virus of beet black scorch disease and detection by synthesized cDNA probes. J. Beijing Agric. Univ. 19:112.
7. Cao, Y. H., Cai, Z. N., Ding, Q., Li, D. W., Han, C. G., Yu, J. L., and Liu, Y. 2002. The complete nucleotide sequence of Beet black scorch virus (BBSV), a new member of the genus Necrovirus. Arch. Virol. 147:2431-2435.
8. Clark, M. F., and Adams, A. N. 1977. Characteristics of the microplate method of enzyme-linked immunosorbent assay for the detection of plant viruses. J. Gen. Virol. 34, 475-483.
9. Cui, X. M. 1988. An icosahedral virus found in sugar beet. J. Xinjiang Shihezi Agric. Coll. 10:73-78.
10. Cui, X. M., Cai, Z. N., Wu, J., and Liu, Y. 1991. Study on symptom pattern of sugarbeet rhizomania disease. Plant Prot. 17:5-7.
11. Duffus, J. E., and Ruppel, E. G. 1993. Diseases. Pages 346-427 in: The Sugarbeet Crop. D. A. Cooke and R. K. Scott, eds. Chapman and Hall, London.
12. Fekete, R. A., Miller, M. J., and Chattoraj, D. K. 2003. Fluorescently labeled oligonucleotide extension: a rapid and quantitative protocol for primer extension. BioTechniques 35:90-94.
13. Gibbs, A. and Harrison, B. 1976. Plant Virology: The Principles. Edward Arnold (Publ.), London
14. Guan, H., and Simon, A. E. 2000. Polymerization of non-template bases prior to transcription initiation at the 3′ ends of templates by an RNA-dependent RNA polymerase: An activity involved in 3′-end repair of viral RNAs. Proc. Natl. Acad. Sci. USA 97:12451-12456
15. Guo, L. H., Cao, Y. H., Li, D. W., Niu, S. N., Cai, Z. N., Han, C. G., Zhai, Y. F., and Yu, J. L. 2005. Analysis of nucleotide sequences and multimeric forms of a novel satellite RNA associated with Beet black scorch virus. J. Virol. 79:3664-3674.
16. Huang, X,. and Madan, A. 1999. CAP3: A DNA sequence assembly program. Genome Res. 9:868-877.
17. Hull, R. 1992. Viruses. In: Molecular Plant Pathology: A Practical Approach. IRL Press, Oxford.
18. Jiang, J. X., Zhang, J. F., Che, S. C., Yang, D. J., Yu, J. L., Cai, Z. N., and Liu, Y. 1999. Transmission of beet black scorch virus by Olpidium brassicae. J. Jiangxi Agric. Univ. 21:525-528.
19. Joshi, C. P., Zhou, H., Huang, X., and Chiang, V. L. 1997. Context sequences of translation initiation codon in plants. Plant Mol. Biol. 35:993-1001.
20. Lennefors, B.-L., Savenkov, E. I., Mukasa, S. B., and Valkonen, J. P. T. 2005. Sequence divergence of four soilborne sugarbeet-infecting viruses. Virus Genes 31:57-64.
21. Molnar, A., Halvelda, Z., Dalmay, T., Szutorisz, H., and Burgyan, J. 1997. Complete nucleotide sequence of tobacco necrosis strain DH and genes required for RNA replication and virus movement. J. Gen. Virol. 78:1235-1239.
22. Panavas, T., Hawkins, C. M., Panaviene, Z., and Nagy, P. D. 2005. The role of the p33:p33/p92 interaction domain in RNA replication and intracellular localization of p33 and p92 proteins of Cucumber necrosis tombusvirus. Virology 338:81-95.
23. Rochon, D., Kakani, K., Robbins, M., and Reade, R. 2004. Molecular aspects of plant virus transmission by Olpidium and plasmodiophorid vectors. Annu. Rev. Phytopathol. 42:211-241.
24. Rush, C. M., Liu, H.-Y., and Lewellen, R. T. 2006. The continuing saga of Rhizomania of sugar beets in the United States. Plant Dis. 90:4-15.
25. Russo, M., Burgyan, J., and Martelli, G. P. 1994. Molecular biology of the tombusviridae. Adv. Virus Res. 44:381-428.
26. Sambrook, J. and Russell, D. 2001. Molecular Cloning: A Laboratory Manual, 3rd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
27. Shen, R., and Miller, W. A. 2006. Structures required for poly(A) tail-independent translation overlap with, but are distinct from, cap-independent translation and RNA replication signals at the 3′ end of tobacco necrosis virus RNA. Virology doi:10.1016/j.virol.2008.08.054.
28. Stothard, P. 2000. The Sequence Manipulation Suite: JavaScript programs for analyzing and formatting protein and DNA sequences. Biotechniques 28:1102-1104.
29. Thompson, J. D., Higgins, D. G., and Gibson, T. J. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
30. Weiland, J. J., and Dreher, T. W. 1989. Infectious TYMV RNA from cloned cDNA: Effects in vitro and in vivo of point substitutions in the initiation codons of two extensively overlapping ORFs. Nucleic Acids Res. 17:4675-4687.
31. Weiland, J. J., and Edwards, M. C. 1994. Evidence that the αa gene of barley stripe mosaic virus encodes determinants of pathogenicity to oat. Virology 201:116-126.
32. Weiland, J. J., Larson, R. L., Freeman, T. P., and Edwards, M. C. 2006. First Report of Beet black scorch virus in the United States. Plant Dis. 90:828.
33. White, K. A., and Nagy, P. D. 2004. Advances in the molecular biology of tombusviruses: gene expression, genome replication, and recombination. Prog. Nucleic Acid Res. Mol. Biol. 78:187-226.
34. Yuan, X., Cao, Y., Xi, D., Guo, L., Han, C., Li, D., Zhai, Y., and Yu, J. 2006. Analysis of the subgenomic RNAs and the small open reading frames of Beet black scorch virus. J. Gen. Virol. 87:3077-3086.