On the evolution of epistasis III: The haploid case with mutation

Theoretical Population Biology

Volumn 73, Issue 2, 2008, Pages 307-316

  Liberman, Uri ^a   Feldman, Marcus ^b  

^a TEL AVIV UNIVERSITY   (Israel)

^b STANFORD UNIVERSITY   (United States)

Author keywords

Antagonistic epistasis; Modifier theory; Mutation selection balance; Three locus model; Viability analogous equilibrium

Indexed keywords

ANTAGONISM; BACTERIUM; EPISTASIS; EXPERIMENTAL STUDY; FITNESS; MUTATION; POPULATION GENETICS; SELECTION; SYNERGISM;

ARTICLE; BIOLOGICAL MODEL; GENETIC EPISTASIS; HAPLOIDY; MOLECULAR EVOLUTION; MUTATION; POPULATION GENETICS; STATISTICAL MODEL; STATISTICS; UNITED STATES;

EPISTASIS, GENETIC; EVOLUTION, MOLECULAR; GENETICS, POPULATION; HAPLOIDY; MODELS, GENETIC; MODELS, STATISTICAL; MUTATION; UNITED STATES;

BACTERIA (MICROORGANISMS);

EID: 39149100619     PISSN: 00405809     EISSN: 10960325     Source Type: Journal    
DOI: 10.1016/j.tpb.2007.11.010     Document Type: Article

References (31)

1. Azevedo R.B.R., Lohaus R., Srinivasan S., Dang K.K., and Burch C.L. Sexual reproduction selects for robustness and negative epistasis in artificial gene networks. Nature 440 (2006) 87-90
2. Beerenwinkel N., Pachter L., Sturmfels B., Elena S.F., and Lenski R.E. Analysis of epistatic interactions and fitness landscapes using a new geometric approach. BMC Evol. Biol. 7 (2007) 60
3. Bonhoeffer S., Chappey C., Parkin N.T., Whitcomb J.M., and Petropoulos C.J. Evidence for positive epistasis in HIV-1. Science 306 (2004) 1547-1550
4. Burch C.L., and Chao L. Epistasis and its relationship to canalization in the RNA virus φ{symbol} 6. Genetics 167 (2004) 559-567
5. Cheverud J.M., and Routman E.J. Epistasis and its contribution to genetic variance components. Genetics 139 (1995) 1455-1461
6. Desai M.M., Weissman D., and Feldman M.W. Evolution can favor antagonistic epistasis. Genetics 177 (2007) 1001-1010
7. Elena S.F., and Lenski R.E. Test of synergistic interactions among deleterious mutations in bacteria. Nature 390 (1997) 395-398
8. Elena S.F., and Lenski R.E. Epistasis between new mutations and genetic background and a test of genetic canalization. Evolution 55 (2001) 1746-1752
9. Eshel I., and Feldman M.W. On the evolutionary effect of recombination. Theor. Popul. Biol. 1 (1970) 88-100
10. Feldman M.W., Christiansen F.B., and Brooks L.D. Evolution of recombination in a constant environment. Proc. Natl. Acad. Sci. USA 77 (1980) 4838-4841
11. Felsenstein J. The effect of linkage on directional selection. Genetics 52 (1965) 349-363
12. Froissart R., Wilke C.O., Montville R., Remold S.K., Chao L., and Turner P.E. Co-infection weakens selection against epistatic mutations in RNA viruses. Genetics 168 (2004) 9-19
13. Hansen T.F., and Wagner G.P. Modeling genetic architecture: A multilinear model of gene interaction. Theor. Popul. Biol. 59 (2001) 61-86
14. Hansen T.F., Álvarez-Castro J.M., Carter A.J.R., Hermisson J., and Wagner G.P. Evolution of genetic architecture under directional selection. Evolution 60 (2006) 1523-1536
15. Karlin S., and McGregor J. On mutation selection balance for two-locus haploid and diploid populations. Theor. Popul. Biol. 2 (1971) 60-70
16. Karlin S., and McGregor J. Application of method of small parameters to multi-niche population genetic models. Theor. Popul. Biol. 3 (1972) 186-209
17. Keightley P.D., and Otto S.P. Interference among deleterious mutations favors sex and recombination in finite populations. Nature 443 (2006) 89-92
18. Kondrashov A. Deleterious mutations and the evolution of sexual reproduction. Nature 336 (1988) 435-440
19. Lenski R.E., Ofria C., Collier T.C., and Adami C. Genome complexity, robustness, and genetic interactions in digital organisms. Nature 400 (1999) 661-664
20. Liberman U., and Feldman M.W. Modifiers of mutation rate: A general reduction principle. Theor. Popul. Biol. 30 (1986) 125-142
21. Liberman U., and Feldman M.W. On the evolution of epistasis I: Diploids under selection. Theor. Popul. Biol. 67 (2005) 141-160
22. Liberman U., and Feldman M.W. Evolutionary theory for modifiers of epistasis: A general symmetric model. Proc. Natl. Acad. Sci. USA 103 (2006) 19402-19406
23. Lunzer M., Miller S.P., Felsheim R., and Dean A.M. The biochemical architecxture of an ancient adaptive landscape. Science 310 (2005) 499-501
24. Michalakis Y., and Roze D. Epistasis in RNA viruses. Science 306 (2004) 1492-1493
25. Otto S.P., and Lenormand T. Resolving the paradox of sex and recombination. Nat. Rev. Genet. 3 (2002) 252-261
26. Sanjuan R., Moya A., and Elena S.F. The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus. Proc. Natl. Acad. Sci. USA 101 (2004) 8396-8401
27. Shapiro B., Rambaut A., Pybus O.G., and Holmes E.C. A phylogenetic method for detecting positive epistasis in gene sequences and its application to RNA virus evolution. Mol. Biol. Evol. 23 (2006) 1724-1730
28. Weinreich D.M., and Chao L. Rapid evolutionary escape by large populations from local fitness peaks is likely in nature. Evolution 59 (2005) 1175-1182
29. Weinreich D.M., Watson R.A., and Chao L. Sign epistasis and genetic constraint on evolutionary trajectories. Evolution 59 (2005) 1165-1174
30. Wilke C.O., and Adami C. Interaction between directional epistasis and average mutational effects. Proc. R. Soc. B 268 (2001) 1469-1474
31. You L., and Yin J. Dependence of epistasis on environment and mutation severity as revealed by in Silico mutagenesis of phage T7. Genetics 160 (2002) 1273-1281