Mitochondrial DNA variability in slovaks, with application to the roma origin

Annals of Human Genetics

Volumn 72, Issue 2, 2008, Pages 228-240

  Malyarchuk, Boris A ^a   Perkova, M A ^a   Derenko, M V ^a   Vanecek, T ^b   Lazur, J ^c   Gomolcak, P ^d  

^a INSTITUTE OF BIOLOGICAL PROBLEMS OF THE NORTH   (Russian Federation)

^b CHARLES UNIVERSITY   (Czech Republic)

^c LABMED   (Slovakia)

^d SLOVAK MEDICAL UNIVERSITY   (Slovakia)

Author keywords

Mitochondrial DNA; Molecular phylogeography; Roma; Slovak population

Indexed keywords

MITOCHONDRIAL DNA;

AFRICA; ARTICLE; CONTROLLED STUDY; CZECH REPUBLIC; DNA SEQUENCE; GENE MUTATION; GENE POOL; GENETIC CODE; GENETIC LINE; GENETIC MARKER; GENETIC VARIABILITY; HAPLOTYPE; HUMAN; INDIAN; MITOCHONDRIAL GENE; MITOCHONDRIAL GENETICS; NUCLEOTIDE SEQUENCE; POLAND; POPULATION GENETICS; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RUSSIAN FEDERATION; SLOVAKIA;

BASE SEQUENCE; DNA, MITOCHONDRIAL; EUROPEAN CONTINENTAL ANCESTRY GROUP; GENETICS, POPULATION; GYPSIES; HAPLOTYPES; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; POPULATION DYNAMICS; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

EID: 39049144903     PISSN: 00034800     EISSN: 14691809     Source Type: Journal    
DOI: 10.1111/j.1469-1809.2007.00410.x     Document Type: Article

References (53)

1. Abu-Amero, K. K., Gonzalez, A. M., Larruga, J. M., Bosley, T. M. & Cabrera, V. M. (2007). Eurasian and African mitochondrial DNA influences in the Saudi Arabian population. BMC Evol. Biol 7, 32.
2. Achilli, A., Rengo, C., Battaglia, V., Pala, M., Olivieri, A., Fornarino, S., Magri, C., Scozzari, R., Babudri, N., Santachiara-Benerecetti, A. S., Bandelt, H. -J., Semino, O. & Torroni, A. (2005). Saami and Berbers -an unexpected mitochondrial DNA link. Am J Hum Genet 76, 883-886.
3. Alekseeva, T. I. & Alekseev V. P. (1989). Anthropological view of the origin of Slavs. Priroda 881, 60-69 (in Russian).
4. Andrews, R. M., Kubacka, I., Chinnery, P. F., Lightowlers, R. N., Turnbull, D. M. & Howell, N. (1999). Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat Genet 23, 147.
5. Baasner, A. & Madea, B. (2000). Sequence polymorphisms of the mitochondrial DNA control region in 100 German Caucasians. J Forensic Sci 45, 1343-1348.
6. Baasner, A., Schäfer, C., Junge, A. & Burkhard, M. (1998). Polymorphic sites in human mitochondrial DNA control region sequences: population data and maternal inheritance. Forensic Sci Int 98, 169-178.
7. Belyaeva, O., Bermisheva, M., Khrunin, A., Slominsky, P., Bebyakova, N., Khusnutdinova, E., Mikulich, A. & Limborska, S. (2003). Mitochondrial DNA variations in Russian and Belorussian populations. Hum Biol 75, 647-660.
8. Calafell, F., Underhill, P., Tolun, A., Angelicheva, D. & Kalaydjieva, L. (1996). From Asia to Europe: Mitochondrial DNA sequence variability in Bulgarians and Turks. Ann Hum Genet 60, 35-049.
9. Carelli, V., Achilli, A., Valentino, M. L., Rengo, C., Semino, O., Pala, M., Olivieri, A., Mattiazzi, M., Pallotti, F., Carrara, F., Zeviani, M., Leuzzi, V., Carducci, C., Valle, G., Simionati, B., Mendieta, L., Salomao, S., Belfort, R. Jr, Sadun, A.A. & Torroni, A. (2006). Haplogroup effects and recombination of mitochondrial DNA: Novel clues from the analysis of Leber hereditary optic neuropathy pedigrees. Am J Hum Genet 78, 564-574.
10. Cvjetan, S., Tolk, H. V., Barac Lauc, L., Colak, I., Dordevic, D., Efremovska, L., Janicijevich, B., Kvesic, A., Martinovic Klaric, I., Metspalu, E., Pericic, M., Parik, J., Popovic, D., Sijacki, A., Terzic, R., Villems, R. & Rudan, P. (2004). Frequencies of mtDNA haplogroups in Southeastern Europe -Croatians, Bosnians and Herzegovinians, Serbians, Macedonians and Macedonian Romani. Coll Anthropol 28, 193-198.
11. Demeter, N., Bessonov, N. & Kutenkov, V. (2000). The Roma history. New view. Voronezh: N. Mikluho-Maklay Institute of Ethnology and Anthropology, Russian Academy of Sciences (in Russian).
12. Dubut, V., Chollet, L., Murail, P., Cartault, F., Beraud-Colomb, E., Serre M. & Mogentale-Profizi, N. (2004). MtDNA polymorphisms in five French groups: Importance of regional sampling. Eur J Hum Genet 12, 293-300.
13. Egyed, B., Brandstätter, A., Irwin, J. A., Pádár, Z., Parsons, T. J. & Parson, W. (2007). Mitochondrial control region sequence variations in the Hungarian population: Analysis of population samples from Hungary and from Transylvania (Romania). Forensic Sci Internatl: Genetics. 1, 158-162.
14. Finnilä, S., Hassinen, I. E., Ala-Kokko, L. & Majamaa, K. (2000). Phylogenetic network of the mtDNA haplogroup U in northern Finland based on sequence analysis of the complete coding region by conformation-sensitive gel electrophoresis. Am J Hum Genet 66, 1017-1026.
15. Gimbutas, M. (1971). The Slavs. New York, NY: Praeger Publishing.
16. Gresham, D., Morar, B., Underhill, P. A., Passarino, G., Lin, A. A., Wise, C., Angelicheva, D., Calafell, F., Oefner, P. J., Shen, P., Tournev, I., de Pablo, R., Kicinskas, V., Perez-Lezaun, A., Marushiakova, E., Popov, V. & Kalaydjieva, L. (2001). Origins and divergence of the Roma (Gypsies). Am J Hum Genet 69, 1314-1331.
17. Kalaydjieva, L., Gresham, D. & Calafell, F. (2001). Genetic studies of the Roma (Gypsies): A review. BMC Med Genet 2, 5.
18. Kivisild, T., Shen, P., Wall, D. P., Do, B., Sung, R., Davis, K., Passarino, G., Underhill, P. A., Scharfe, C., Torroni, A., Scozzari, R., Modiano, D., Coppa, A., de Knijff, P., Feldman, M., Cavalli-Sforza, L. L. & Oefner, P. J. (2006). The role of selection in the evolution of human mitochondrial genomes. Genetics 172, 373-387.
19. Loogväli, E. -L., Roostalu, U., Malyarchuk, B. A., Derenko, M. V., Kivisild, T., Metspalu, E., Tambets, K., Reidla, M., Tolk, H. -V., Parik, J., Pennarun, E., Laos, S., Lunkina, A., Golubenko, M., Barac, L., Pericic, M., Balanovsky, O. P., Gusar, V., Khusnutdinova, E. K., Stepanov, V., Puzyrev, V., Rudan, P., Balanovska, E. V., Grechanina, E., Richard, C., Moisan, J. P., Chaventre, A., Anagnou, N. P., Pappa, K. I., Michalodimitrakis, E. N., Claustres, M., Golge, M., Mikerezi, I., Usanga, E. & Villems, R. (2004). Disuniting uniformity: A pied cladistic canvas of mtDNA haplogroup H in Eurasia. Mol Biol Evol 21, 2012-2021.
20. Lutz, S., Weisser, H. -J., Heizmann, J. & Pollak, S. (1998). Location and frequency of polymorphic positions in the mtDNA control region of individuals from Germany. Int J Legal Med 111, 67-77.
21. Malyarchuk, B. A. & Czarny, J. (2005). African DNA lineages in the mitochondrial gene pool of Europeans. Mol Biol (Mosk) 39, 703-709.
22. Malyarchuk, B. A. & Derenko, M. V. (2001). Mitochondrial DNA variability in Russians and Ukrainians: Implication to the origin of the Eastern Slavs. Ann Hum Genet 65, 63-78.
23. Malyarchuk, B. A., Derenko, M. V. & Solovenchuk, L. L. (1995). Types of mitochondrial DNA control region in the Eastern Slavs. Rus J Genet 31, 723-727.
24. Malyarchuk, B. A., Grzybowski, T., Derenko, M. V., Czarny, J., Wozniak, M. & Miscicka-sliwka, D. (2002). Mitochondrial DNA variability in Poles and Russians. Ann Hum Genet 66, 261-283.
25. Malyarchuk, B. A., Grzybowski, T., Derenko, M. V., Czarny, J., Drobni(, K. & Miscicka-Sliwka, D. (2003). Mitochondrial DNA variability in Bosnians and Slovenians. Ann Hum Genet 67, 412-425.
26. Malyarchuk, B., Derenko, M., Grzybowski, T., Lunkina, A., Czarny, J., Rychkov, S., Morozova, I., Denisova, G. & Miscicka-sliwka, D. (2004). Differentiation of mitochondrial DNA and Y chromosome in Russian populations. Hum Biol 76, 877-900.
27. Malyarchuk, B. A., Grzybowski, T., Derenko, M. V., Czarny, J. & Miscicka-sliwka, D. (2006a). Mitochondrial DNA diversity in the Polish Roma. Ann Hum Genet 70, 195-206.
28. Malyarchuk, B. A., Vanecek, T., Perkova, M. A., Derenko, M. V. & Sip, M. (2006b). Mitochondrial DNA variability in the Czech population, with application to the ethnic history of Slavs. Hum Biol 78, 681-696.
29. Morar, B., Gresham, D., Angelicheva, D., Tournev, I., Gooding, R., Guergueltcheva, V., Schmidt, C., Abicht, A., Lochmuller, H., Tordai, A., Kalmar, L., Nagy, M., Karcagi, V., Jeanpierre, M., Herczegfalvi, A., Beeson, D., Venkataraman, V., Carter, K. W., Reeve, J., de Pablo, R., Kucinskas, V. & Kalaydjieva, L. (2004). Mutation history of the Roma/ Gypsies. Am J Hum Genet 75, 596-609.
30. Olivieri, A., Achilli, A., Pala, M., Battaglia, V., Fornarino, S., Al-Zahery, N., Scozzari, R., Cruciani, F., Behar, D. M., Dugoujon, J. M., Coudray, C., Santachiara-Benerecetti, A. S., Semino, O., Bandelt, H.-J. & Torroni, A. (2006). The mtDNA legacy of the Levantine early Upper Palaeolithic in Africa. Science 314, 1767-1770.
31. Orekhov, V., Poltoraus, A., Zhivotovsky, L. A., Spitsyn, V., Ivanov P. & Yankovsky, N. (1999). Mitochondrial DNA sequence diversity in Russians. FEBS Letters 445, 197-201.
32. Palanichamy, M. G., Sun, C., Agrawal, S., Bandelt, H. -J., Kong, Q. -P., Khan, F., Wang, C. -E., Chaudhuri, T. K., Palla, V. & Zhang, Y. -P. (2004). Phylogeny of mitochondrial DNA macrohaplogroup N in India, based on complete sequencing: Implications for the peopling of South Asia. Am J Hum Genet 75, 966-978.
33. Parson, W., Parsons, T. J., Scheithauer, R. & Holland, M. M. (1998). Population data for 101 Austrian Caucasian mitochondrial DNA d-loop sequences: Application of mtDNA sequence analysis to a forensic case. Int J Legal Med 111, 124-132.
34. Pereira, L., Cunha, C., Alves, C. & Amorim, A. (2005). African female heritage in Iberia: A reassessment of mtDNA lineage distribution in present times. Hum Biol 77, 213-229.
35. Pericic, M., Lauc, L. B., Klaric, I. M., Rootsi, S., Janicijevic, B., Rudan, I., Terzic, R., Colak, I., Kvesic, A., Popovic, D., Sijacki, A., Behluli, I., Dordevic, D., Efremovska, L., Bajec, D. D., Stefanovic, B. D., Villems, R. & Rudan, P. (2005). High-resolution phylogenetic analysis of southeastern Europe traces major episodes of paternal gene flow among Slavic populations. Mol Biol Evol 22, 1964-1975.
36. Pliss, L., Tambets, K., Loogvali, E. -L., Pronina, N., Lazdins, M., Krumina, A., Baumanis, V. & Villems, R. (2006). Mitochondrial DNA portrait of Latvians: Towards the understanding of the genetic structure of Baltic-speaking populations. Ann Hum Genet 70, 439-458.
37. Quintana-Murci, L., Chaix, R., Wells, R. S., Behar, D. M., Sayar, H., Scozzari, R., Rengo, C., Al-Zahery, N., Semino, O., Santachiara-Benerecetti, A. S., Coppa, A., Ayub, Q., Mohyuddin, A., Tyler-Smith, C., Mehdi, S. Q., Torroni, A. & McElreavey, K. (2004). Where West meets East: The complex mtDNA landscape of the southwest and central Asian corridor. Am J Hum Genet 74, 827-845.
38. Rebala, K., Mikulich, A. I., Tsybovsky, I. S., Sivakova, D., Dzupinkova, Z., Szczerkowska-Dobosz, A. & Szczerkowska, Z. (2007). Y-STR variation among Slavs: Evidence for the Slavic homeland in the middle Dnieper basin. J Hum Genet 52, 406-414.
39. Richards, M. B., Macaulay, V. A., Hickey, E., Vega, E., Sykes, B., Guida, V., Rengo, C., Sellito, D., Cruciani, F., Kivisild, T., Villems, R., Thomas, M., Rychkov, S., Rychkov, O., Rychkov, Yu., Golge, M., Dimitrov, D., Hill, E., Bradley, D., Romano, V., Cali, F., Vona, G., Demaine, A., Papiha, S., Triantaphyllidis, C., Stefanescu, G., Hatina, J., Belledi, M., DiRienzo, A., Novelletto, A., Oppenheim, A., Norby, S., Al-Zaheri, N., Santachiara-Benerecetti, S., Scozzari, R., Torroni, A. & Bandelt, H. -J. (2000). Tracing European founder lineages in the Near Eastern mtDNA pool. Am J Hum Genet 67, 1251-1276.
40. Ruiz-Pesini, E., Lott, M.T., Procaccio, V., Poole, J. C., Brandon, M. C., Mishmar, D., Yi, C., Kreuziger, J., Baldi, P. & Wallace, D. C. (2007). An enhanced MITOMAP with a global mtDNA mutational phylogeny. Nucleic Acids Res 35 (Database issue), D823-828.
41. Sajantila, A., Lahermo, P., Anttinen, T., Lukka, M., Sistonen, P., Savontaus, M. L., Aula, P., Beckman, L., Tranebjaerg, L., Gedde-Dahl, T., Issel-Tarver, L., Di Rienzo, A. & Paabo, S. (1995). Genes and languages in Europe -an analysis of mitochondrial lineages. Genome Res 5, 42-52.
42. Salas, A., Richards, M., De la Fe, T., Lareu, M. V., Sobrino, B., Sanchez-Diz, P., Macaulay, V. & Carracedo, A. (2002). The making of the African mtDNA landscape. Am J Hum Genet 71, 1082-1111.
43. Savli, J., Bor, M. & Tomažic, I. (1996). Veneti. First builders of European community. Tracing the history and language of early ancestors of Slovenes. Wien, Boswell: Editiones Veneti.
44. Schneider, S., Roessli, D. & Excoffier, L. (2000). Arlequin ver.2.0: A software for population genetics data analysis. Genetics and Biometry laboratory, University of Geneva, Switzerland.
45. Sedov, V. V. (1979). Origin and early history of Slavs. Moscow: Nauka (in Russian).
46. Sun, C., Kong, Q. P., Palanichamy, M. G., Agrawal, S., Bandelt, H. -J., Yao, Y. G., Khan, F., Zhu, C. L., Chaudhuri, T. K. & Zhang, Y. P. (2006). The dazzling array of basal branches in the mtDNA macrohaplogroup M from India as inferred from complete genomes. Mol Biol Evol 23, 683-690.
47. Tolk, H. V., Pericic, M., Barac, L., Martinovic Klaric, I., Janicijevic, B., Rudan, I., Parik, J., Villems, R. & Rudan, P. (2000). MtDNA haplogroups in the populations of Croatian Adriatic Islands. Coll Anthropol 24, 267-279.
48. Torroni, A., Huoponen, K., Francalacci, P., Petrozzi, M., Morelli, L., Scozzari, R., Obinu, D., Savontaus, M. -L. & Wallace, D. C. (1996). Classification of European mtDNAs from an analysis of three European populations. Genetics 144, 1835-1850.
49. Torroni, A., Rengo, C., Guida, V., Cruciani, F., Sellitto, D., Coppa, A., Calderon, F. L., Simionati, B., Valle, G., Richards, M., Macaulay, V. & Scozzari, R. (2001). Do the four clades of the mtDNA haplogroup L2 evolve at different rates? Am J Hum Genet 69, 1348-1356.
50. Torroni, A., Achilli, A., Macaulay, V., Richards, M. & Bandelt, H.-J. (2006). Harvesting the fruit of the human mtDNA tree. Trends Genet 22, 339-345.
51. Vanecek, T., Vorel, F. & Sip, M. (2004). Mitochondrial DNA D-loop hypervariable regions: Czech population data. Int J Legal Med 118, 14-18.
52. Zaykin, D. V. & Pudovkin, A. J. (1993). Two programs to estimate significance of Chi-square values using pseudo-probability test. J Heredity 84, 152.
53. Zupanic Pajnic, I., Balazic, J. & Komel, R. (2004). Sequence polymorphism of the mitochondrial DNA control region in the Slovenian population. Int J Legal Med 118, 1-4.