Protein-protein interaction prediction based on association rules of protein functional regions

Second International Conference on Innovative Computing, Information and Control, ICICIC 2007

Volumn , Issue , 2007, Pages

  Fei Hung, Hung ^a   Hung Wen, Chiu ^a  

^a TAIPEI MEDICAL UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS; DATA REDUCTION; DISEASES; STATISTICAL METHODS; YEAST;

INTERACTION PREDICTION; PPI DATA; PROTEIN FUNCTIONAL REGIONS;

PROTEINS;

EID: 39049127947     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICICIC.2007.466     Document Type: Conference Paper

References (11)

1. Hu Z., Mellor J., Wu J. and DeLisi C, "VisANT: an online visualization and analysis tool for biological interaction data" , BMC Bioinformatics, Vol. 5, 2004, pp 17-24.
2. Marcotte EM., Pellegrini M., Ng HL., Rice DW., Yeates TO. and Eisenberg D., "Detecting Protein Function and Protein-Protein Interactions from Genome Sequences " , SCIENCE, Vol. 285, 1999, pp 751-753.
3. Cesareni G., Ceol A., Gavrila C., Palazzi LM., Persico M. and Schneider MV., "Comparative interactomics" , FEBS Letters, Vol. 579, 2005, pp 1828-1833.
4. Deng M., Menta S., Sun F. and Chen T., "Inferring Domain-Domain Interactions From Protein-Protein Interactions" , Genome Research, Vol. 12, No. 10. 2002. pp 1540-1548.
5. Han DS., Kim HS., Jang WH., Lee SD. and Suh JK., "PreSPI: design and implementation of protein-protein interaction prediction service system" , Genome Informatics, Vol. 15,No. 2, 2004, pp 171-180.
6. Ng SK., Zhang Z., Tan SH. and Lin K., " InterDom: a database of putative interacting protein domains for validating predicted protein interactions and complexes" , Nucleic Acids Research, Vol. 31, No. 1, 2003, pp 251-254.
7. Kocatas A., Gursoy A. and Atalay R., "Application of Data Mining Techniques to Protein-Protein Interaction Prediction" , LNCS, Springer Berlin / Heidelberg, Vol. 2869, 2003, pp. 316-323.
8. Database of Interacting Proteins, (DIP), University of California., Available at: http://dip.doe-mbi.ucla.cdLi/.
9. IntAct, European Molecular Biology Laboratory, Bioinformatics European Bioinformatics Institute, Available at: http://www.ebi.ac.uk/intact/site/index. jsf/.
10. Univcrsal Protein Resource, (UNIPROT), National Institute of Health, Available at: http://www.uniprot.org/.
11. Christian Borgelt and Rudolf Kruse, "Induction of Association Rules: Apriori Implementation", 15th Conference on Computational Statistics, Physica Verlag, Heidelberg, Germany, 2002.