Functional, genetic and bioinformatic characterization of a calcium/calmodulin kinase gene in Sporothrix schenckii

BMC Microbiology

Volumn 7, Issue , 2007, Pages

  Valle Aviles, Liz ^a   Valentin Berrios, Shirley ^b   Gonzalez Mendez, Ricardo R ^a   Rodriguez Del Valle, Nuri ^a  

^a UNIVERSITY OF PUERTO RICO   (Puerto Rico)

^b San Juan Bautista School of Medicine   (Puerto Rico)

Author keywords

[No Author keywords available]

Indexed keywords

1 [N,O BIS(5 ISOQUINOLINESULFONYL) N METHYLTYROSYL] 4 PHENYLPIPERAZINE; AMINO ACID; CALMODULIN INHIBITOR; COMPLEMENTARY DNA; LAVENDUSTIN C; N (6 AMINOHEXYL) 5 CHLORO 1 NAPHTHALENESULFONAMIDE; NUCLEOSIDE; PROTEIN KINASE (CALCIUM,CALMODULIN); PROTEIN SERINE THREONINE KINASE; PROTEIN TYROSINE KINASE INHIBITOR; UNCLASSIFIED DRUG; CALMODULIN; ENZYME INHIBITOR;

ARTICLE; BIOINFORMATICS; CELL BUDDING; CELL CYCLE; DNA DETERMINATION; DNA SEQUENCE; GENE CONTROL; GENE FUNCTION; GENE SEQUENCE; GENETIC ANALYSIS; INTRON; MOLECULAR WEIGHT; MYCELIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; POLYMERASE CHAIN REACTION; PROTEIN BINDING; PROTEIN DOMAIN; SEQUENCE ALIGNMENT; SPOROTHRIX SCHENCKII; YEAST; AMINO ACID SEQUENCE; CHEMISTRY; DRUG ANTAGONISM; DRUG EFFECT; ENZYMOLOGY; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR GENETICS; PHYLOGENY; SEQUENCE HOMOLOGY; SPOROTHRIX;

FUNGI; SPOROTHRIX SCHENCKII;

AMINO ACID SEQUENCE; BASE SEQUENCE; CALCIUM-CALMODULIN-DEPENDENT PROTEIN KINASES; CALMODULIN; CELL CYCLE; ENZYME INHIBITORS; GENE EXPRESSION REGULATION, FUNGAL; MOLECULAR SEQUENCE DATA; MYCELIUM; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; SPOROTHRIX; YEASTS;

EID: 39049112896     PISSN: 14712180     EISSN: 14712180     Source Type: Journal    
DOI: 10.1186/1471-2180-7-107     Document Type: Article

References (68)

1. Sporothrix schenckii and related species of Ceratocystis. LR Travassos KO Lloyd, Microbiol Rev 1980 44 4 683 721 7010114
2. Studies on phase transitions in Sporothrix schenckii; Possible involvement of protein kinase C. W Colon-Colon N Rodriguez-Del Valle, Dimorphic Fungi in Biology and Medicine New York, Plenum Publishing Company, H VB, FC O, D K, 1993 225 246
3. Calcium uptake and efflux during the yeast to mycelium transition in Sporothrix schenckii. S Serrano N Rodriguez-del Valle, Mycopathologia 1990 112 1 1 9 10.1007/BF01795170 2250687
4. Calcium signalling - an overview. MD Bootman TJ Collins CM Peppiatt LS Prothero L MacKenzie P De Smet M Travers SC Tovey JT Seo MJ Berridge F Ciccolini P Lipp, Semin Cell Dev Biol 2001 12 1 3 10 10.1006/scdb.2000.0211 11162741
5. The organisation and functions of local Ca(2+) signals. MD Bootman P Lipp MJ Berridge, J Cell Sci 2001 114 Pt 12 2213 2222 11493661
6. Calcium signalling: dynamics, homeostasis and remodelling. MJ Berridge MD Bootman HL Roderick, Nat Rev Mol Cell Biol 2003 4 7 517 529 10.1038/nrm1155 12838335
7. Calcium signal transduction and cellular control mechanisms. MJ Berridge, Biochim Biophys Acta 2004 1742 1-3 3 7 10.1016/j.bbamcr.2004.08.012 15590051
8. The versatility and complexity of calcium signalling. MJ Berridge, Novartis Found Symp 2001 239 52 64; discussion 64-7, 150-9 11529316
9. Calmodulin: a prototypical calcium sensor. D Chin AR Means, Trends Cell Biol 2000 10 8 322 328 10.1016/S0962-8924(00)01800-6 10884684
10. Ca(2+)/CaM-dependent kinases: from activation to function. SS Hook AR Means, Annu Rev Pharmacol Toxicol 2001 41 471 505 10.1146/annurev.pharmtox.41.1. 471 11264466
11. Calcium/calmodulin-dependent protein kinases. AC Nairn MR Picciotto, Semin Cancer Biol 1994 5 4 295 303 7803766
12. Structure-function of the multifunctional Ca2+/calmodulin-dependent protein kinase II. A Hudmon H Schulman, Biochem J 2002 364 Pt 3 593 611 11931644 10.1042/BJ20020228
13. Regulatory cascades involving calmodulin-dependent protein kinases. AR Means, Mol Endocrinol 2000 14 1 4 13 10.1210/me.14.1.4 10628743
14. Calmodulin - an intracellular calcium receptor. AR Means JR Dedman, Nature 1980 285 5760 73 77 10.1038/285073a0 6990273
15. The multifunctional calcium/calmodulin-dependent protein kinase: from form to function. AP Braun H Schulman, Annu Rev Physiol 1995 57 417 445 10.1146/annurev.ph.57.030195.002221 7778873
16. Purification and characterization of Ca2+/calmodulin-dependent protein kinase IV kinase from rat brain. S Okuno T Kitani H Fujisawa, J Biochem (Tokyo) 1994 116 4 923 930 7883770
17. Calcium/calmodulin-dependent protein kinase I. cDNA cloning and identification of autophosphorylation site. MR Picciotto AJ Czernik AC Nairn, J Biol Chem 1993 268 35 26512 26521 8253780
18. Substrate specificity of a multifunctional calmodulin-dependent protein kinase. RB Pearson JR Woodgett P Cohen BE Kemp, J Biol Chem 1985 260 27 14471 14476 4055784
19. Multiple Ca2+/calmodulin-dependent protein kinase genes in a unicellular eukaryote. MH Pausch D Kaim R Kunisawa A Admon J Thorner, Embo J 1991 10 6 1511 1522 2026147
20. Ca2+-calmodulin promotes survival of pheromone-induced growth arrest by activation of calcineurin and Ca2+-calmodulin-dependent protein kinase. MJ Moser JR Geiser TN Davis, Mol Cell Biol 1996 16 9 4824 4831 8756641
21. Cloning of a calmodulin kinase I homologue from Schizosaccharomyces pombe. CD Rasmussen, J Biol Chem 2000 275 1 685 690 10.1074/jbc.275.1.685 10617667
22. Identification and characterization of two Ca2+/CaM-dependent protein kinases required for normal nuclear division in Aspergillus nidulans. JD Joseph AR Means, J Biol Chem 2000 275 49 38230 38238 10.1074/jbc.M006422200 10988293
23. Calcium binding is required for calmodulin function in Aspergillus nidulans. JD Joseph AR Means, Eukaryot Cell 2002 1 1 119 125 12455978 10.1128/EC.01.1.119-125.2002
24. Cloning and sequence determination of a cDNA encoding Aspergillus nidulans calmodulin-dependent multifunctional protein kinase. LB Kornstein ML Gaiso RL Hammell DC Bartelt, Gene 1992 113 1 75 82 10.1016/0378-1119(92)90671-B 1563634
25. Characterization and expression of the unique calmodulin gene of Aspergillus nidulans. CD Rasmussen RL Means KP Lu GS May AR Means, J Biol Chem 1990 265 23 13767 13775 2199442
26. Identification of a calcium/calmodulin-dependent protein kinase that phosphorylates the Neurospora circadian clock protein FREQUENCY. Y Yang P Cheng G Zhi Y Liu, J Biol Chem 2001 276 44 41064 41072 10.1074/jbc.M106905200 11551951
27. Cloning of a Ca(2+)/calmodulin-dependent protein kinase gene from the filamentous fungus Arthrobotrys dactyloides. PJ Tsai J Tu TH Chen, FEMS Microbiol Lett 2002 212 1 7 13 10.1111/j.1574-6968.2002.tb11237.x 12076780
28. MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data. K Quandt K Frech H Karas E Wingender T Werner, Nucleic Acids Res 1995 23 23 4878 4884 8532532 10.1093/nar/23.23.4878
29. Activity-dependent CREB phosphorylation: convergence of a fast, sensitive calmodulin kinase pathway and a slow, less sensitive mitogen-activated protein kinase pathway. GY Wu K Deisseroth RW Tsien, Proc Natl Acad Sci U S A 2001 98 5 2808 2813 11226322 10.1073/pnas.051634198
30. ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins. E de Castro CJ Sigrist A Gattiker V Bulliard PS Langendijk-Genevaux E Gasteiger A Bairoch N Hulo, Nucleic Acids Res 2006 34 Web Server issue W362 5 16845026 10.1093/nar/gkl124
31. Pfam: clans, web tools and services. RD Finn J Mistry B Schuster-Bockler S Griffiths-Jones V Hollich T Lassmann S Moxon M Marshall A Khanna R Durbin SR Eddy EL Sonnhammer A Bateman, Nucleic Acids Res 2006 34 Database issue D247 51 16381856 10.1093/nar/gkj149
32. Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. SK Hanks T Hunter, Faseb J 1995 9 8 576 596 7768349
33. The protein kinase family: conserved features and deduced phylogeny of the catalytic domains. SK Hanks AM Quinn T Hunter, Science 1988 241 4861 42 52 10.1126/science.3291115 3291115
34. PANTHER: a library of protein families and subfamilies indexed by function. PD Thomas MJ Campbell A Kejariwal H Mi B Karlak R Daverman K Diemer A Muruganujan A Narechania, Genome Res 2003 13 9 2129 2141 12952881 10.1101/gr.772403
35. Calmodulin target database. KL Yap J Kim K Truong M Sherman T Yuan M Ikura, J Struct Funct Genomics 2000 1 1 8 14 10.1023/A:1011320027914 12836676
36. GenBank. DA Benson I Karsch-Mizrachi DJ Lipman J Ostell BA Rapp DL Wheeler, Nucleic Acids Res 2000 28 1 15 18 10592170 10.1093/nar/28.1.15
37. Database resources of the National Center for Biotechnology Information. DL Wheeler C Chappey AE Lash DD Leipe TL Madden GD Schuler TA Tatusova BA Rapp, Nucleic Acids Res 2000 28 1 10 14 10592169 10.1093/nar/28.1.10
38. N-(6-aminohexyl)-5-chloro-1-naphthalenesulfonamide, a calmodulin antagonist, inhibits cell proliferation. H Hidaka Y Sasaki T Tanaka T Endo S Ohno Y Fujii T Nagata, Proc Natl Acad Sci U S A 1981 78 7 4354 4357 6945588 10.1073/pnas.78.7.4354
39. Activity-structure relationship of calmodulin antagonists, Naphthalenesulfonamide derivatives. H Hidaka M Asano T Tanaka, Mol Pharmacol 1981 20 3 571 578 7329399
40. W-7, a calmodulin antagonist, primes the stimulation of human neutrophil respiratory burst by formyl peptides and platelet-activating factor. A Perianin E Pedruzzi J Hakim, FEBS Lett 1994 342 2 135 138 10.1016/0014-5793(94)80487-7 8143865
41. KN-62, 1-[N,O-bis(5-isoquinolinesulfonyl)-N-methyl-L-tyrosyl]-4- phenylpiperazi ne, a specific inhibitor of Ca2+/calmodulin-dependent protein kinase II. H Tokumitsu T Chijiwa M Hagiwara A Mizutani M Terasawa H Hidaka, J Biol Chem 1990 265 8 4315 4320 2155222
42. KN-62 analogues as potent differentiating agents of HL-60 cells. AD Schuler J Si L Mueller JA Simon SJ Collins, Leuk Res 2006 16963120
43. Involvement of Ca2+/calmodulin-dependent protein kinase II in endothelial NO production and endothelium-dependent relaxation. JC Schneider D El Kebir C Chereau S Lanone XL Huang AS De Buys Roessingh JC Mercier J Dall'Ava-Santucci AT Dinh-Xuan, Am J Physiol Heart Circ Physiol 2003 284 6 H2311 9 12560211
44. Sequence motifs for calmodulin recognition. AR Rhoads F Friedberg, Faseb J 1997 11 5 331 340 9141499
45. Rho/Rho-kinase mediated signaling in physiology and pathophysiology. N Wettschureck S Offermanns, J Mol Med 2002 80 10 629 638 10.1007/s00109-002-0370- 2 12395147
46. Rho GTPases in cell biology. S Etienne-Manneville A Hall, Nature 2002 420 6916 629 635 10.1038/nature01148 12478284
47. Small GTPases take the stage. E Manser, Dev Cell 2002 3 3 323 328 10.1016/S1534-5807(02)00268-X 12361596
48. Multiple interactions of PRK1 with RhoA. Functional assignment of the Hr1 repeat motif. P Flynn H Mellor R Palmer G Panayotou PJ Parker, J Biol Chem 1998 273 5 2698 2705 10.1074/jbc.273.5.2698 9446575
49. Specificity and mechanism of action of some commonly used protein kinase inhibitors. SP Davies H Reddy M Caivano P Cohen, Biochem J 2000 351 Pt 1 95 105 10998351 10.1042/0264-6021:3510095
50. Yeast cell cycle of Sporothrix schenckii. S Resto N Rodriguez-del Valle, J Med Vet Mycol 1988 26 1 13 24 10.1080/02681218880000031 3379537
51. Regulation of cell cycle progression by calcium/calmodulin-dependent pathways. CR Kahl AR Means, Endocr Rev 2003 24 6 719 736 10.1210/er.2003-0008 14671000
52. Molecular and cellular events during the yeast to mycelium transition in Sporothrix schenckii. S Betancourt LJ Torres-Bauza N Rodriguez-Del Valle, Sabouraudia 1985 23 3 207 218 4023887
53. Role of Ca++/calmodulin binding proteins in Aspergillus nidulans cell cycle regulation. NN Nanthakumar JS Dayton AR Means, Prog Cell Cycle Res 1996 2 217 228 9552398
54. Regulation of mitogen-activated protein kinases by a calcium/calmodulin- dependent protein kinase cascade. H Enslen H Tokumitsu PJ Stork RJ Davis TR Soderling, Proc Natl Acad Sci U S A 1996 93 20 10803 10808 8855261 10.1073/pnas.93.20.10803
55. The Ca-calmodulin-dependent protein kinase cascade. TR Soderling, Trends Biochem Sci 1999 24 6 232 236 10.1016/S0968-0004(99)01383-3 10366852
56. Ca(2+)/calmodulin-dependent kinase is essential for both growth and nuclear division in Aspergillus nidulans. JS Dayton AR Means, Mol Biol Cell 1996 7 10 1511 1519 8898358
57. Expression of a constitutively active Ca2+/calmodulin-dependent kinase in Aspergillus nidulans spores prevents germination and entry into the cell cycle. JS Dayton M Sumi NN Nanthakumar AR Means, J Biol Chem 1997 272 6 3223 3230 10.1074/jbc.272.6.3223 9013558
58. Role of Ca2+/calmodulin signaling pathway on morphological development of Candida albicans. T Sato Y Ueno T Watanabe T Mikami T Matsumoto, Biol Pharm Bull 2004 27 8 1281 1284 10.1248/bpb.27.1281 15305037
59. Functional and genetic characterization of calmodulin from the dimorphic and pathogenic fungus Paracoccidioides brasiliensis. MJ de Carvalho RS Amorim Jesuino BS Daher I Silva-Pereira SM de Freitas CM Soares MS Felipe, Fungal Genet Biol 2003 39 3 204 210 10.1016/S1087-1845(03)00044-6 12892633
60. Presence of a pertussis toxin-sensitive G protein alpha subunit in Sporothrix schenckii. N Delgado N Rodriguez-del Valle, Med Mycol 2000 38 2 109 121 10.1080/714030929 10817227
61. Methods in Yeast Genetics. F Sherman GR Fink JB Hicks, Cold Spring Harbor, NY, Cold Spring Harbor Laboratory Press 1986
62. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. P Chomczynski N Sacchi, Anal Biochem 1987 162 1 156 159 10.1016/0003-2697(87)90021-2 2440339
63. ExPASy: The proteomics server for in-depth protein knowledge and analysis. E Gasteiger A Gattiker C Hoogland I Ivanyi RD Appel A Bairoch, Nucleic Acids Res 2003 31 13 3784 3788 12824418 10.1093/nar/gkg563
64. Basic local alignment search tool. SF Altschul W Gish W Miller EW Myers DJ Lipman, J Mol Biol 1990 215 3 403 410 2231712
65. M-Coffee: combining multiple sequence alignment methods with T-Coffee. IM Wallace O O'Sullivan DG Higgins C Notredame, Nucleic Acids Res 2006 34 6 1692 1699 16556910 10.1093/nar/gkl091
66. GeneDoc: Analysis and Visualization of Genetic Variation (http://www.nrbsc.org/gfx/genedoc/index.html). KB Nicholas Nicholas H.B. Jr. DW Deerfield, Pittsburg Supercomputing Center, National Resource for Biomedical Supercomputing 1997
67. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. J Castresana, Mol Biol Evol 2000 17 4 540 552 10742046
68. Phylip (Phylogeny Inference Package) version 3.6 (http://evolution. genetics.washington.edu/phylip.html). J Felsenstein, Department of Genome Sciences, University of Washington 2005