Identification of genes preferentially expressed during asexual sporulation in Porphyra yezoensis gametophytes (Bangiales, Rhodophyta)

Journal of Phycology

Volumn 44, Issue 1, 2008, Pages 113-123

  Kitade, Yukihiro ^a   Asamizu, Erika ^b   Fukuda, Satoru ^a,c   Nakajima, Maiko ^b,d   Ootsuka, Shuuji ^a,e   Endo, Hirotoshi ^a   Tabata, Satoshi ^b   Saga, Naotsune ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

^b KAZUSA DNA RESEARCH INSTITUTE   (Japan)

^c Kyowa Concrete Industry Co Ltd   (Japan)

^d RIKEN YOKOHAMA INSTITUTE   (Japan)

^e GRADUATE SCHOOL FOR THE CREATION OF NEW PHOTONICS INDUSTRIES   (Japan)

Author keywords

Archeospore; Asexual sporulation; cDNA macroarray; Gametophyte; Rhodophyta

Indexed keywords

BANGIALES; PORPHYRA; PORPHYRA YEZOENSIS; RHODOPHYTA;

EID: 38949209504     PISSN: 00223646     EISSN: 15298817     Source Type: Journal    
DOI: 10.1111/j.1529-8817.2007.00456.x     Document Type: Article

References (49)

1. Abe, J., Kubo, T., Takagi, Y., Saito, T., Miura, K., Fukuzawa, H. Matsuda, Y. 2004. The transcriptional program of synchronous gametogenesis in Chlamydomonas reinhardtii. Curr. Genet. 46 : 304 15.
2. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. Lipman, D. J. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 : 3389 402.
3. Anjard, C. Loomis, W. F. 2005. Peptide signaling during terminal differentiation of Dictyostelium. Proc. Natl. Acad. Sci. U. S. A. 102 : 7607 11.
4. Asamizu, E., Nakajima, M., Kitade, Y., Saga, N., Nakamura, Y. Tabata, S. 2003. Comparison of RNA expression profiles between the two generations of Porphyra yezoensis (Rhodophyta), based on expressed sequence tag frequency analysis. J. Phycol. 39 : 923 30.
5. Bendtsen, J. D., Nielsen, H., von Heijne, G. Brunak, S. 2004. Improved prediction of signal peptides - SignalP 3.0. J. Mol. Biol. 340 : 783 95.
6. Carpenter, G. Cohen, S. 1990. Epidermal growth factor. J. Biol. Chem. 265 : 7709 12.
7. Chang, M.-H., Chae, K.-S., Han, D.-M. Jahng, K.-Y. 2004. The GanB Gα-protein negatively regulates asexual sporulation and plays a positive role in conidial germination in Aspergillus nidulans. Genetics 167 : 1305 15.
8. Church, G. M. Gilbert, W. 1984. Genomic sequencing. Proc. Natl. Acad. Sci. U. S. A. 81 : 1991 5.
9. Collado-Vides, L. 2002. Clonal architecture in marine macroalgae: ecological and evolutionary perspectives. Evol. Ecol. 15 : 531 45.
10. Frei, E. Preston, R. D. 1964. Non-cellulosic structural polysaccharides in algal cell walls. II. Association of xylan and mannan in Porphyra umbilicalis. Proc. R. Soc. Lond. B Biol. Sci. 160 : 314 27.
11. Fukuda, S., Kitade, Y., Miyamoto, H., Nagashima, S., Takahashi, S., Ohba, T., Asada, K., Kato, I. Saga, N. 2003. Isolation and characterization of an elongation factor-1α gene in Porphyra yezoensis (Rhodophyta). J. Appl. Phycol. 15 : 81 6.
12. Glotzer, M. Hyman, A. A. 1995. Cell polarity: the importance of being polar. Curr. Biol. 5 : 1102 5.
13. Gomi, M., Sonoyama, M. Mitaku, S. 2004. High performance system for signal peptide prediction: SOSUIsignal. Chem-Bio Informat. J. 4 : 142 7.
14. Goodner, B. Quatrano, R. S. 1993. Fucus embryogenesis: a model to study the establishment of polarity. Plant Cell 5 : 1471 81.
15. Han, K.-H., Seo, J.-A. Yu, J.-H. 2004. Regulators of G-protein signalling in Aspergillus nidulans: RgsA downregulates stress response and stimulates asexual sporulation through attenuation of GanB (Gα) signalling. Mol. Microbiol. 53 : 529 40.
16. Hawkes, M. W. 1980. Ultrastructure characteristics of monospore formation in Porphyra gardneri (Rhodophyta). J. Phycol. 16 : 192 6.
17. Hawkes, M. W. 1990. Reproductive strategies. In Cole, K. M. Sheath, R. G. Eds. Biology of the Red Algae. Cambridge University Press, New York, pp. 455 76.
18. Hepler, P. K., Vidali, L. Cheung, A. Y. 2001. Polarized cell growth in higher plants. Annu. Rev. Cell Dev. Biol. 17 : 159 87.
19. Holsinger, K. E. 2000. Reproductive systems and evolution in vascular plants. Proc. Natl. Acad. Sci. U. S. A. 97 : 7037 42.
20. Hubberstey, A. V. Mottillo, E. P. 2002. Cyclase-associated proteins: CAPacity for linking signal transduction and actin polymerization. FASEB J. 16 : 487 99.
21. Katsaros, C., Karyophyllis, D. Galatis, B. 2006. Cytoskeleton and morphogenesis in brown algae. Ann. Bot. 97 : 679 93.
22. Kitade, Y., Fukuda, S., Nakajima, M., Watanabe, T. Saga, N. 2002. Isolation of a cDNA encoding a homologue of actin from Porphyra yezoensis (Rhodophyta). J. Appl. Phycol. 14 : 135 41.
23. Kitade, Y., Fukuda, S. Saga, N. 1999. Preliminary study on early development of monospore of Porphyra yezoensis (Bangiales, Rhodophyta). Fish Genet. Breed. Sci. 28 : 27 34.
24. Kitade, Y., Nakamura, M., Endo, H., Fukuda, S., Kuwano, K. Saga, N. 2006. Characterization of a cDNA encoding a homolog of actin-related protein 4 from a marine red alga Porphyra yezoensis. Fish. Sci. 72 : 639 45.
25. Kitade, Y., Taguchi, G., Shin, J.-A. Saga, N. 1998. Porphyra monospore system (Bangiales, Rhodophyta): a model for the developmental biology of marine plants. Phycol. Res. 46 : 17 20.
26. Kito, H. 1978. Cytological studies on genus Porphyra. Bull. Tohoku Reg. Fish. Res. Lab. 39 : 29 84.
27. Kuwano, K., Aruga, Y. Saga, N. 1996. Cryopreservation of clonal gametophytic thalli of Porphyra (Rhodophyta). Plant Sci. 116 : 117 24.
28. Li, S. Y. 1984. The ecological characteristics of monospores of Porphyra yezoensis Ueda and their use in cultivation. Hydrobiologia 116/117 : 255 8.
29. Matsuzaki, M., Misumi, O., Shin-i, T., Maruyama, S., Takahara, M., Miyagishima, S., Mori, T., et al. 2004. Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature 428 : 653 7.
30. Miura, A. 1975. Porphyra cultivation in Japan. In Tokida, J. Hirose, H. Eds. Advance of Phycology in Japan. VEB Gustav Fischer Verlag, Jena, Germany, pp. 273 304.
31. Mizuta, H., Yasui, H. Saga, N. 2003. A simple method to mass produce monospores in the thallus of Porphyra yezoensis Ueda. J. Appl. Phycol. 15 : 345 9.
32. Nikaido, I., Asamizu, E., Nakajima, M., Nakamura, Y., Saga, N. Tabata, S. 2000. Generation of 10,154 expressed sequence tags from a leafy gametophyte of a marine red alga, Porphyra yezoensis. DNA Res. 7 : 223 7.
33. Niwa, K., Kikuchi, N., Iwabuchi, M. Aruga, Y. 2004. Morphological and AFLP variation of Porphyra yezoensis Ueda form. narawaensis Miura (Bangiales, Rhodophyta). Phycol. Res. 52 : 180 90.
34. Notoya, M. 1999. "Seed" production of Porphyra spp. by tissue culture. J. Appl. Phycol. 11 : 105 10.
35. Otero, A. Vincenzini, M. 2004. Nostoc (Cyanophyceae) goes nude: extracellular polysaccharides serve as a sink for reducing power under unbalanced C/N metabolism. J. Phycol. 40 : 74 81.
36. Patron, N. J. Keeling, P. J. 2005. Common evolutionary origin of starch biosynthetic enzymes in green and red algae. J. Phycol. 41 : 1131 41.
37. Paul, M. J. Pellny, T. K. 2003. Carbon metabolite feedback regulation of leaf photosynthesis and development. J. Exp. Bot. 54 : 539 47.
38. Pruyne, D. Bretscher, A. 2000. Polarization of cell growth in yeast. II. The role of the cortical actin cytoskeleton. J. Cell Sci. 113 : 571 85.
39. Sasaki, Y., Asamizu, E., Shibata, D., Nakamura, Y., Kaneko, T., Awai, K., Amagai, M., et al. 2001. Monitoring of methyl jasmonate-responsive genes in Arabidopsis by cDNA macroarray: self-activation of jasmonic acid biosynthesis and crosstalk with other phytohormone signaling pathways. DNA Res. 8 : 153 61.
40. Schena, M. Davis, R. W. 2000. Technology standards for microarray research. In Schena, M. Ed. Microarray Biochip Technology. Eaton Publishing, Natick, Massachusetts, pp. 1 18.
41. Schmitt, R. 2003. Differentiation of germinal and somatic cells in Volvox carteri. Curr. Opin. Microbiol. 6 : 608 13.
42. Söderbom, F. Loomis, W. F. 1998. Cell-cell signaling during Dictyostelium development. Trends Microbiol. 6 : 402 6.
43. Sonnhammer, E. L. Hollich, V. 2005. Scoredist: a simple and robust protein sequence distance estimator. BMC Bioinformatics 6 : 108.
44. Tatarenkov, A., Bergström, L., Jönsson, R. B., Serrão, E. A., Kautsky, L. Johannesson, K. 2005. Intriguing asexual life in marginal populations of the brown seaweed Fucus vesiculosus. Mol. Ecol. 14 : 647 51.
45. Thompson, J. D., Higgins, D. G. Gibson, T. J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 : 4673 80.
46. Tomimatsu, R., Takahashi, M., Endo, H., Kitade, Y., Yasui, H. Saga, N. 2006. Induction and characterization of a brilliant green mutant in a marine red alga Porphyra yezoensis (Bangiales, Rhodophyta). Fish Genet. Breed. Sci. 36 : 43 7.
47. West, J. A. Zuccarello, G. C. 1999. Biogeography of sexual and asexual populations in Bostrychia moritziana (Rhodomelaceae, Rhodophyta). Phycol. Res. 47 : 115 23.
48. West, J. A., Zuccarello, G. C. Kamiya, M. 2001. Reproductive patterns of Caloglossa species (Delesseriaceae, Rhodophyta) from Australia and New Zealand: multiple origins of asexuality in C. leprieurii. Literature review on apomixis, mixed-phase, bisexuality and sexual compatibility. Phycol. Res. 49 : 183 200.
49. Zeng, F., Zhang, X., Zhu, L., Tu, L., Guo, X. Nie, Y. 2006. Isolation and characterization of genes associated to cotton somatic embryogenesis by suppression subtractive hybridization and macroarray. Plant Mol. Biol. 60 : 167 83.