-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0031610907
-
Bacterial iron transport: Mechanisms genetics, and regulation
-
Braun, V., Hantke, K. and Köster, W. (1998). Bacterial iron transport: Mechanisms genetics, and regulation. Met. Ions Biol. Syst. 35, 67-145.
-
(1998)
Met. Ions Biol. Syst
, vol.35
, pp. 67-145
-
-
Braun, V.1
Hantke, K.2
Köster, W.3
-
3
-
-
0032189860
-
Concordance analysis of microbial genomes
-
Bruccoleri, R. E., Dougherty, T. J. and Davison, D. B. (1998). Concordance analysis of microbial genomes. Nucleic Acids Res. 26, 4482-4486.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 4482-4486
-
-
Bruccoleri, R.E.1
Dougherty, T.J.2
Davison, D.B.3
-
4
-
-
0020065258
-
Fractionation and characterization of the phosphoenolpyruvate: Fructose 1-phosphotransferase system from Pseudomonas aeruginosa
-
Durham, D. R. and Phibbs, P. V. Jr. (1982). Fractionation and characterization of the phosphoenolpyruvate: Fructose 1-phosphotransferase system from Pseudomonas aeruginosa. J. Bacteriol. 149, 534-541.
-
(1982)
J. Bacteriol
, vol.149
, pp. 534-541
-
-
Durham, D.R.1
Phibbs Jr., P.V.2
-
5
-
-
0032728399
-
Searching for drug targets in microbial genomes
-
Galperin, M. Y. and Koonin, E. V. (1999). Searching for drug targets in microbial genomes. Curr. Opin. Biotechnol. 10, 571-578.
-
(1999)
Curr. Opin. Biotechnol
, vol.10
, pp. 571-578
-
-
Galperin, M.Y.1
Koonin, E.V.2
-
6
-
-
6044244615
-
Conserved hypothetical' proteins: Prioritization of targets for experimental study
-
Galperin, M. Y. and Koonin, E. V. (2004). 'Conserved hypothetical' proteins: Prioritization of targets for experimental study. Nucleic Acids Res. 32, 5452-5463.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 5452-5463
-
-
Galperin, M.Y.1
Koonin, E.V.2
-
7
-
-
0031253990
-
Differential genome display
-
Huynen, M., Diaz-Lazcoz, Y. and Bork, P. (1997). Differential genome display. Trends Genet. 13, 389-390.
-
(1997)
Trends Genet
, vol.13
, pp. 389-390
-
-
Huynen, M.1
Diaz-Lazcoz, Y.2
Bork, P.3
-
8
-
-
0032502899
-
Differential genome analysis applied to the species-specific features of Helicobacter pylori
-
Huynen, M., Dandekar, T. and Bork, P. (1998). Differential genome analysis applied to the species-specific features of Helicobacter pylori. FEBS Lett. 426, 1-5.
-
(1998)
FEBS Lett
, vol.426
, pp. 1-5
-
-
Huynen, M.1
Dandekar, T.2
Bork, P.3
-
9
-
-
0028906201
-
An estimation of minimal genome size required for life
-
Itaya, M. (1995). An estimation of minimal genome size required for life. FEBS Lett. 362, 257-260.
-
(1995)
FEBS Lett
, vol.362
, pp. 257-260
-
-
Itaya, M.1
-
10
-
-
10744229659
-
Comprehensive transposon mutant library of Pseudomonas aeruginosa
-
Jacobs, M. A., Alwood, A., Thaipisuttikul, I., Spencer, D., Haugen, E., Ernst, S., Will, O., Kaul, R., Raymond, C., Levy, R., Chun-Rong, L., Guenthner, D., Bovee, D., Olson, M. V. and Manoil, C. (2003). Comprehensive transposon mutant library of Pseudomonas aeruginosa. Proc. Natl. Acad. Sci. USA 100, 14339-14344.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 14339-14344
-
-
Jacobs, M.A.1
Alwood, A.2
Thaipisuttikul, I.3
Spencer, D.4
Haugen, E.5
Ernst, S.6
Will, O.7
Kaul, R.8
Raymond, C.9
Levy, R.10
Chun-Rong, L.11
Guenthner, D.12
Bovee, D.13
Olson, M.V.14
Manoil, C.15
-
11
-
-
0034646694
-
Antibacterial agents that target lipid A biosynthesis in gram-negative bacteria
-
Jackman, J. E., Fierke, C. A., Turney, L. N., Pirrung, M., Uchiyama, T., Tahir, S. H., Hindsgaul, O. and Raetz, C. R. H. (2000). Antibacterial agents that target lipid A biosynthesis in gram-negative bacteria. J. Biol. Chem. 275, 11002-11009.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 11002-11009
-
-
Jackman, J.E.1
Fierke, C.A.2
Turney, L.N.3
Pirrung, M.4
Uchiyama, T.5
Tahir, S.H.6
Hindsgaul, O.7
Raetz, C.R.H.8
-
12
-
-
0035895351
-
Site-directed mutagenesis of the bacterial metalloamidase UDP-(3-O-acyl)-N-acetylglucosamine deacetylase (LpxC). Identification of the zinc binding site
-
Jackman, J. E., Raetz, C. R. H. and Fierke, C. A. (2001). Site-directed mutagenesis of the bacterial metalloamidase UDP-(3-O-acyl)-N-acetylglucosamine deacetylase (LpxC). Identification of the zinc binding site. Biochemistry 40, 514-523.
-
(2001)
Biochemistry
, vol.40
, pp. 514-523
-
-
Jackman, J.E.1
Raetz, C.R.H.2
Fierke, C.A.3
-
13
-
-
0036081062
-
The KEGG databases at Genome Net
-
Kanehisa, M., Goto, S., Kawashima, S. and Nakaya, A. (2002). The KEGG databases at Genome Net. Nucleic Acids Res. 30, 42-46.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 42-46
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Nakaya, A.4
-
14
-
-
0345668475
-
Essential Bacillus subtilis genes
-
Kobayashi, K., et al. (2003). Essential Bacillus subtilis genes. Proc. Natl. Acad. Sci. USA 100, 4678-4683.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 4678-4683
-
-
Kobayashi, K.1
-
15
-
-
0032102671
-
Beyond complete genomes: From sequence to structure and function
-
Koonin, E. V., Tatusov, R. L. and Galperin, M. Y. (1998). Beyond complete genomes: From sequence to structure and function. Curr. Opin. Struct. Biol. 8, 355-363.
-
(1998)
Curr. Opin. Struct. Biol
, vol.8
, pp. 355-363
-
-
Koonin, E.V.1
Tatusov, R.L.2
Galperin, M.Y.3
-
16
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
The Genome International Consortium
-
Lander, E. S., et al., The Genome International Consortium (2001). Initial sequencing and analysis of the human genome. Nature 409, 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
-
17
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R. A., MacArthur, M. A., Smith, D. K., Jones, D. T., Hutchinson, E. G., Morris, A. L., Moss, D. S. and Thornton, J. M. (1993). PROCHECK: A program to check the stereochemical quality of protein structures. J. Appl. Cryst. 26, 283-291.
-
(1993)
J. Appl. Cryst
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.A.2
Smith, D.K.3
Jones, D.T.4
Hutchinson, E.G.5
Morris, A.L.6
Moss, D.S.7
Thornton, J.M.8
-
18
-
-
0035038011
-
Drug targeting Mycobacterium tuberculosis cell wall synthesis: Genetics of dTDP-rhamnose synthetic enzymes and development of a microtiter plate-based screen for inhibitors of conversion of dTDP-glucose to dTDP-rhamnose
-
Ma, Y., Stern, R. J., Scherman, M. S., Vissa, V. D., Yan, W., Jones, V. C., Zhang, F., Franzblau, S. G., Lewis, W. H. and McNeil, M. R. (2001). Drug targeting Mycobacterium tuberculosis cell wall synthesis: genetics of dTDP-rhamnose synthetic enzymes and development of a microtiter plate-based screen for inhibitors of conversion of dTDP-glucose to dTDP-rhamnose. Antimicrob. Agents Chemother. 45, 1407-1416.
-
(2001)
Antimicrob. Agents Chemother
, vol.45
, pp. 1407-1416
-
-
Ma, Y.1
Stern, R.J.2
Scherman, M.S.3
Vissa, V.D.4
Yan, W.5
Jones, V.C.6
Zhang, F.7
Franzblau, S.G.8
Lewis, W.H.9
McNeil, M.R.10
-
19
-
-
33744487392
-
Molecular validation of LpxC as an antibacterial drug target in Pseudomonas aeruginosa
-
Mdluli, K. E., Witte, P. R., Kline, T., Barb, A. W., Erwin, A. L., Mansfield, B. E., McClerren, A. L., Pirrung, M. C., Turney, L. N., Warrener, P., Raetz, C. R. H. and Stover, C. K. (2006). Molecular validation of LpxC as an antibacterial drug target in Pseudomonas aeruginosa. Antimicrob. Agents Chemother. 50, 2178-2184.
-
(2006)
Antimicrob. Agents Chemother
, vol.50
, pp. 2178-2184
-
-
Mdluli, K.E.1
Witte, P.R.2
Kline, T.3
Barb, A.W.4
Erwin, A.L.5
Mansfield, B.E.6
McClerren, A.L.7
Pirrung, M.C.8
Turney, L.N.9
Warrener, P.10
Raetz, C.R.H.11
Stover, C.K.12
-
20
-
-
0038779197
-
Genetic strategies for antibacterial drug discovery
-
Miesel, L., Greene, J. and Black, T. A. (2003). Genetic strategies for antibacterial drug discovery. Nat. Rev. Genet. 4, 442-456.
-
(2003)
Nat. Rev. Genet
, vol.4
, pp. 442-456
-
-
Miesel, L.1
Greene, J.2
Black, T.A.3
-
21
-
-
0029789824
-
A minimal gene set for cellular life derived by comparison of complete bacterial genomes
-
Mushegian, A. R. and Koonin, E. V. (1996). A minimal gene set for cellular life derived by comparison of complete bacterial genomes. Proc. Natl. Acad. Sci. USA 93, 10268-10273.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 10268-10273
-
-
Mushegian, A.R.1
Koonin, E.V.2
-
22
-
-
0031948133
-
Antibiotic resistance caused by gram-negative multidrug efflux pumps
-
Nikaido, H. (1998). Antibiotic resistance caused by gram-negative multidrug efflux pumps. Clin. Infect. Dis. 27, S32-S41.
-
(1998)
Clin. Infect. Dis
, vol.27
-
-
Nikaido, H.1
-
23
-
-
0032833434
-
Amino acid-mediated induction of the basic amino acid-specific outer membrane porin OprD from Pseudomonas aeruginosa
-
Ochs, M. M., Lu, C.-D., Hancock, R. E. W. and Abdelal, A. T. (1999). Amino acid-mediated induction of the basic amino acid-specific outer membrane porin OprD from Pseudomonas aeruginosa. J. Bacteriol. 181, 5426-5432.
-
(1999)
J. Bacteriol
, vol.181
, pp. 5426-5432
-
-
Ochs, M.M.1
Lu, C.-D.2
Hancock, R.E.W.3
Abdelal, A.T.4
-
24
-
-
10044239624
-
A novel genomics approach for the identification of drug targets in pathogens, with special reference to Pseudomonas aeruginosa
-
Sakharkar, K. R., Sakharkar, M. K. and Chow, V. T. (2004). A novel genomics approach for the identification of drug targets in pathogens, with special reference to Pseudomonas aeruginosa. In Silico Biol. 4, 0028.
-
(2004)
In Silico Biol
, vol.4
, pp. 0028
-
-
Sakharkar, K.R.1
Sakharkar, M.K.2
Chow, V.T.3
-
25
-
-
33646034288
-
Gene fusion in Helicobacter pylori: Making the ends meet
-
Sakharkar, K. R., Sakharkar, M. K. and Chow, V. T. (2006). Gene fusion in Helicobacter pylori: Making the ends meet. Antonie Van Leeuwenhoek 89, 169-180.
-
(2006)
Antonie Van Leeuwenhoek
, vol.89
, pp. 169-180
-
-
Sakharkar, K.R.1
Sakharkar, M.K.2
Chow, V.T.3
-
26
-
-
0028871814
-
Evaluation of comparative protein modeling by MODELLER
-
Sali, A., Potterton, L., Yuan, F., van Vlijmen, H. and Karplus, M. (1995). Evaluation of comparative protein modeling by MODELLER. Proteins 23, 318-326.
-
(1995)
Proteins
, vol.23
, pp. 318-326
-
-
Sali, A.1
Potterton, L.2
Yuan, F.3
van Vlijmen, H.4
Karplus, M.5
-
27
-
-
0028882959
-
Structural genes for salicylate biosynthesis from chorismate in Pseudomonas aeruginosa
-
Serino, L., Reimmann, C., Baur, H., Beyeler, M., Visca, P. and Haas, D. (1995). Structural genes for salicylate biosynthesis from chorismate in Pseudomonas aeruginosa. Mol. Gen. Genet. 249, 217-228.
-
(1995)
Mol. Gen. Genet
, vol.249
, pp. 217-228
-
-
Serino, L.1
Reimmann, C.2
Baur, H.3
Beyeler, M.4
Visca, P.5
Haas, D.6
-
28
-
-
0036855381
-
Ramachandran plot on the web
-
Sheik, S. S., Sundararajan, P., Hussain, A. S. Z. and Sekar, K. (2002). Ramachandran plot on the web. Bioinformatics 18, 1548-1549.
-
(2002)
Bioinformatics
, vol.18
, pp. 1548-1549
-
-
Sheik, S.S.1
Sundararajan, P.2
Hussain, A.S.Z.3
Sekar, K.4
-
29
-
-
0034739007
-
-
Stover, C. K., Pham, X. Q., Erwin, A. L., Mizoguchi, S. D., Warrener, P., Hickey, M. J., Brinkman, F. S., Hufnagle, W. O., Kowalik, D. J., Lagrou, M., Garber, R. L., Goltry, L., Tolentino, E., Westbrock-Wadman, S., Yuan, Y., Brody, L. L., Coulter, S. N., Folger, K. R., Kas, A., Larbig, K., Lim, R., Smith, K., Spencer, D., Wong, G. K., Wu, Z., Paulsen, I. T., Reizer, J., Saier, M. H., Hancock, R. E., Lory, S. and Olson, M. V. (2000). Complete genome sequence of Pseudomonas aeruginosa PAO1: An opportunistic pathogen. Nature 406, 959-964.
-
Stover, C. K., Pham, X. Q., Erwin, A. L., Mizoguchi, S. D., Warrener, P., Hickey, M. J., Brinkman, F. S., Hufnagle, W. O., Kowalik, D. J., Lagrou, M., Garber, R. L., Goltry, L., Tolentino, E., Westbrock-Wadman, S., Yuan, Y., Brody, L. L., Coulter, S. N., Folger, K. R., Kas, A., Larbig, K., Lim, R., Smith, K., Spencer, D., Wong, G. K., Wu, Z., Paulsen, I. T., Reizer, J., Saier, M. H., Hancock, R. E., Lory, S. and Olson, M. V. (2000). Complete genome sequence of Pseudomonas aeruginosa PAO1: An opportunistic pathogen. Nature 406, 959-964.
-
-
-
-
30
-
-
0033800818
-
Characterization of the alanine racemases from Pseudomonas aeruginosa PAO1
-
Strych, U., Huang, H. C., Krause, K. L. and Benedik, M. J. (2000). Characterization of the alanine racemases from Pseudomonas aeruginosa PAO1. Curr. Microbiol. 41, 290-294.
-
(2000)
Curr. Microbiol
, vol.41
, pp. 290-294
-
-
Strych, U.1
Huang, H.C.2
Krause, K.L.3
Benedik, M.J.4
-
31
-
-
0030660581
-
A genomic perspective on protein families
-
Tatusov, R. L., Koonin, E. V. and Lipman, D. J. (1997). A genomic perspective on protein families. Science 278, 631-637.
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
32
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., Higgins, D. G. and Gibson, T. J. (1994). CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
33
-
-
0038154073
-
Crystal structure of LpxC, a zinc-dependent deacetylase essential for endotoxin biosynthesis
-
Whittington, D. A., Rusche, K. M., Shin, H., Fierke, C. A. and Christianson, D. W. (2003). Crystal structure of LpxC, a zinc-dependent deacetylase essential for endotoxin biosynthesis. Proc. Natl. Acad. Sci. USA 100, 8146-8150.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 8146-8150
-
-
Whittington, D.A.1
Rusche, K.M.2
Shin, H.3
Fierke, C.A.4
Christianson, D.W.5
|