메뉴 건너뛰기




Volumn 91, Issue 3, 2008, Pages 438-457

Modelling gene expression control using P systems: The Lac Operon, a case study

Author keywords

Gene expression control; Gillespie's algorithm; Lac Operon; P systems; Systems biology

Indexed keywords

BENCHMARKING; COLIFORM BACTERIUM; DNA; GENE EXPRESSION; GENETIC ALGORITHM; MODEL; PROTEIN;

EID: 38949145309     PISSN: 03032647     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biosystems.2007.02.011     Document Type: Article
Times cited : (47)

References (22)
  • 1
    • 85194537249 scopus 로고    scopus 로고
    • Bernardini, F., Manca, V., 2002. P systems with boundary rules. In: Pǎun, Gh., Rozenberg, G., Salomaa, A., Zandron, C. (Eds.), Membrane Computing, International Workshop, vol. 2597 of Lecture Notes in Computer Science. Springer, Curtea de Arges, Romania, pp. 107-118.
    • Bernardini, F., Manca, V., 2002. P systems with boundary rules. In: Pǎun, Gh., Rozenberg, G., Salomaa, A., Zandron, C. (Eds.), Membrane Computing, International Workshop, vol. 2597 of Lecture Notes in Computer Science. Springer, Curtea de Arges, Romania, pp. 107-118.
  • 2
    • 85194584557 scopus 로고    scopus 로고
    • Bianco, L., Fontana, F., Manca, V., 2005. P systems and the modelling of biochemical oscillation. In: Freund, R., Pǎun, Gh., Rozenberg, G., Salomaa, A. (Eds.), Membrane Computing, International Workshop, vol. 3850 of Lecture Notes in Computer Science. Springer, Vienna, Austria, pp. 199-208.
    • Bianco, L., Fontana, F., Manca, V., 2005. P systems and the modelling of biochemical oscillation. In: Freund, R., Pǎun, Gh., Rozenberg, G., Salomaa, A. (Eds.), Membrane Computing, International Workshop, vol. 3850 of Lecture Notes in Computer Science. Springer, Vienna, Austria, pp. 199-208.
  • 5
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie D.T. Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem. 81 25 (1977) 2340-2361
    • (1977) J. Phys. Chem. , vol.81 , Issue.25 , pp. 2340-2361
    • Gillespie, D.T.1
  • 6
    • 0035933994 scopus 로고    scopus 로고
    • Approximate accelerated stochastic simulation of chemically reacting systems
    • Gillespie D.T. Approximate accelerated stochastic simulation of chemically reacting systems. J. Chem. Phys. 115 4 (2001) 1716-1733
    • (2001) J. Chem. Phys. , vol.115 , Issue.4 , pp. 1716-1733
    • Gillespie, D.T.1
  • 7
    • 0242425970 scopus 로고    scopus 로고
    • Improved leap-size selection for accelerated stochastic simulation
    • Gillespie D.T. Improved leap-size selection for accelerated stochastic simulation. J. Chem. Phys. 119 16 (2003) 8229-8234
    • (2003) J. Chem. Phys. , vol.119 , Issue.16 , pp. 8229-8234
    • Gillespie, D.T.1
  • 8
    • 0016701413 scopus 로고
    • Action of β-galactosidase on allolactose
    • Huber R.E., Wallenfels K., and Kurz G. Action of β-galactosidase on allolactose. Can. J. Biochem. 53 (1975) 1035-1038
    • (1975) Can. J. Biochem. , vol.53 , pp. 1035-1038
    • Huber, R.E.1    Wallenfels, K.2    Kurz, G.3
  • 9
    • 0017389047 scopus 로고
    • Transcription and translation initiation frequencies of the Escherichia coli Lac Operon
    • Kennell D., and Riezman H. Transcription and translation initiation frequencies of the Escherichia coli Lac Operon. J. Mol. Biol. 114 (1977) 1-21
    • (1977) J. Mol. Biol. , vol.114 , pp. 1-21
    • Kennell, D.1    Riezman, H.2
  • 10
    • 0035896577 scopus 로고    scopus 로고
    • The effect of transcription and translation initiation frequencies on the stochastic fluctuations in prokayotic gene expression
    • Kierzek A.M., Zaim J., and Zielenkiewicz P. The effect of transcription and translation initiation frequencies on the stochastic fluctuations in prokayotic gene expression. J. Biol. Chem. 276 11 (2001) 8165-8172
    • (2001) J. Biol. Chem. , vol.276 , Issue.11 , pp. 8165-8172
    • Kierzek, A.M.1    Zaim, J.2    Zielenkiewicz, P.3
  • 11
    • 0025759935 scopus 로고
    • Kinetic analysis of lactose exchange in proteoliposomes reconstituted with purified lac permease
    • Lolkema J.S., Carrasco N., and Kaback R. Kinetic analysis of lactose exchange in proteoliposomes reconstituted with purified lac permease. Biochemistry 30 (1991) 1284-1290
    • (1991) Biochemistry , vol.30 , pp. 1284-1290
    • Lolkema, J.S.1    Carrasco, N.2    Kaback, R.3
  • 12
    • 10044260032 scopus 로고    scopus 로고
    • Modelling and simulation of biological systems with stochasticity
    • Meng T.C., Somani S., and Dhar P. Modelling and simulation of biological systems with stochasticity. In Silico Biol. 4 (2004) 0024
    • (2004) In Silico Biol. , vol.4 , pp. 0024
    • Meng, T.C.1    Somani, S.2    Dhar, P.3
  • 13
    • 0034248380 scopus 로고    scopus 로고
    • Computing with membranes
    • Pǎun Gh. Computing with membranes. J. Comput. Syst. Sci. 61 1 (2000) 108-143
    • (2000) J. Comput. Syst. Sci. , vol.61 , Issue.1 , pp. 108-143
    • Pǎun, Gh.1
  • 18
    • 0004211673 scopus 로고    scopus 로고
    • Cold Spring Harbor Laboratory Press, New York
    • Ptashne M., and Gann A. Genes and Signals (2002), Cold Spring Harbor Laboratory Press, New York
    • (2002) Genes and Signals
    • Ptashne, M.1    Gann, A.2
  • 19
    • 85194566129 scopus 로고    scopus 로고
    • Romero-Campero, F.J., Pérez-Jiménez, M.J. A model of the quorum sensing system in Vibrio fischeri using P systems. Artif. Life J., in press.
    • Romero-Campero, F.J., Pérez-Jiménez, M.J. A model of the quorum sensing system in Vibrio fischeri using P systems. Artif. Life J., in press.
  • 20
    • 0034634571 scopus 로고    scopus 로고
    • Understanding glucose transport by the bacterial phosphoenolpyruvate: glycose phosphotransferase system on the basis of kinetic measurements in vitro
    • Rohwer J.M., Meadow N.D., Roseman S., and Westerhoff H. Understanding glucose transport by the bacterial phosphoenolpyruvate: glycose phosphotransferase system on the basis of kinetic measurements in vitro. J. Biol. Chem. 275 45 (2000) 34909-34921
    • (2000) J. Biol. Chem. , vol.275 , Issue.45 , pp. 34909-34921
    • Rohwer, J.M.1    Meadow, N.D.2    Roseman, S.3    Westerhoff, H.4
  • 21
    • 0030211187 scopus 로고    scopus 로고
    • Stochastic simulation of coupled reaction-diffusion processes
    • Stundzia A.B., and Lumsden C.J. Stochastic simulation of coupled reaction-diffusion processes. J. Comput. Phys. 127 (1996) 196-207
    • (1996) J. Comput. Phys. , vol.127 , pp. 196-207
    • Stundzia, A.B.1    Lumsden, C.J.2
  • 22
    • 0031105797 scopus 로고    scopus 로고
    • Mathematical model of the Lac Operon: inducer exclusion, catabolite repression, and diauxic growth on glucose and lactose
    • Wong P., Gladney S., and Keasling J.D. Mathematical model of the Lac Operon: inducer exclusion, catabolite repression, and diauxic growth on glucose and lactose. Biotechnol. Prog. 13 (1997) 132-143
    • (1997) Biotechnol. Prog. , vol.13 , pp. 132-143
    • Wong, P.1    Gladney, S.2    Keasling, J.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.