BRM-Parser: A tool for comprehensive analysis of BLAST and RepeatMasker results

In Silico Biology

Volumn 7, Issue 4-5, 2007, Pages 399-403

  Bajpai, Anjali ^a   Sridhar, Settu ^a   Reddy, Hemakumar M ^a   Jesudasan, Rachel A ^a  

^a CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY   (India)

Author keywords

BLAST; Filter; Merge; Mutation; Parse; RepeatMasker; Repeats

Indexed keywords

ACCESS TO INFORMATION; ANALYTIC METHOD; ARTICLE; COMPUTER INTERFACE; COMPUTER PROGRAM; GENE FREQUENCY; GENE MUTATION; GENE SEQUENCE; GENETIC DATABASE; INFORMATION PROCESSING; MUTATION RATE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS;

ALGORITHMS; ANIMALS; COMPUTATIONAL BIOLOGY; COMPUTING METHODOLOGIES; MALE; MICE; REPETITIVE SEQUENCES, NUCLEIC ACID; SEQUENCE ALIGNMENT; SOFTWARE; Y CHROMOSOME;

EID: 38949139804     PISSN: 13866338     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (6)

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3. Kurtz, S., Choudhun, J. V., Ohlebusch, E., Schleiermacher, C., Stoye, J. and Giegerich, R. (2001). REPuter: The manifold applications of repeat analysis on a genomic scale. Nucleic Acids Res. 29, 4633-4642.
4. Singh, L., Panicker, S. G., Nagaraj, R. and Majumdar, K. C. (1994). Banded krait minor-satellite (Bkm)-associated Y chromosome-specific repetitive DNA in mouse. Nucleic Acids Res. 22, 2289-2295.
5. Smit, A. F. (1996). The origin of interspersed repeats in the human genome. Curr. Opin. Genet. Dev. 6, 743-748.
6. Sonnhammer, E. L. L. and Durbin, R. (1994). A workbench for large scale sequence homology analysis. Comput. Applic. Biosci. 10, 301-307.