-
1
-
-
0018199224
-
DNAse footprinting: A simple method for detection of protein-DNA binding specificity
-
Galas D.J., and Schmitz A. DNAse footprinting: A simple method for detection of protein-DNA binding specificity. Nucleic Acids Res. 5 (1978) 3157-3170
-
(1978)
Nucleic Acids Res.
, vol.5
, pp. 3157-3170
-
-
Galas, D.J.1
Schmitz, A.2
-
2
-
-
0021112472
-
Methidiumpropyl-EDTA. Fe(II) and DNase-I footprinting report different small molecule-binding site sizes on DNA
-
Van Dyke M.W., and Dervan P.B. Methidiumpropyl-EDTA. Fe(II) and DNase-I footprinting report different small molecule-binding site sizes on DNA. Nucleic Acids Res. 11 (1983) 5555-5567
-
(1983)
Nucleic Acids Res.
, vol.11
, pp. 5555-5567
-
-
Van Dyke, M.W.1
Dervan, P.B.2
-
3
-
-
0034886199
-
High-resolution footprinting studies of drug-DNA complexes using chemical and enzymatic probes
-
Fox K.R., and Waring M.J. High-resolution footprinting studies of drug-DNA complexes using chemical and enzymatic probes. Methods Enzymol. 340 (2001) 412-430
-
(2001)
Methods Enzymol.
, vol.340
, pp. 412-430
-
-
Fox, K.R.1
Waring, M.J.2
-
4
-
-
34247492103
-
Footprinting: A method for determining the sequence, selectivity affinity and kinetics of DNA-binding ligands
-
Hampshire A.J., Rusling D.A., Broughton-Head V.J., and Fox K.R. Footprinting: A method for determining the sequence, selectivity affinity and kinetics of DNA-binding ligands. Methods 42 (2007) 128-140
-
(2007)
Methods
, vol.42
, pp. 128-140
-
-
Hampshire, A.J.1
Rusling, D.A.2
Broughton-Head, V.J.3
Fox, K.R.4
-
5
-
-
0021768545
-
DNA structural variations produced by actinomycin and distamycin as revealed by DNAase-I footprinting
-
Fox K.R., and Waring M.J. DNA structural variations produced by actinomycin and distamycin as revealed by DNAase-I footprinting. Nucleic Acids Res. 12 (1984) 9271-9285
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 9271-9285
-
-
Fox, K.R.1
Waring, M.J.2
-
6
-
-
0025103261
-
Quantitative footprinting analysis: Binding to a single site
-
Rehfuss R., Goodisman J., and Dabrowiak J.C. Quantitative footprinting analysis: Binding to a single site. Biochemistry 29 (1990) 777-781
-
(1990)
Biochemistry
, vol.29
, pp. 777-781
-
-
Rehfuss, R.1
Goodisman, J.2
Dabrowiak, J.C.3
-
7
-
-
0022437260
-
Quantitative DNase footprint titration: A method for studying protein-DNA interactions
-
Brenowitz M., Senear D.F., Shea M.A., and Ackers G.K. Quantitative DNase footprint titration: A method for studying protein-DNA interactions. Methods Enzymol. 130 (1986) 132-181
-
(1986)
Methods Enzymol.
, vol.130
, pp. 132-181
-
-
Brenowitz, M.1
Senear, D.F.2
Shea, M.A.3
Ackers, G.K.4
-
9
-
-
0034881638
-
Footprinting methods for analysis of pyrrole-imidazole polyamide/DNA complexes
-
Trauger J.W., and Dervan P.B. Footprinting methods for analysis of pyrrole-imidazole polyamide/DNA complexes. Methods Enzymol. 340 (2001) 450-466
-
(2001)
Methods Enzymol.
, vol.340
, pp. 450-466
-
-
Trauger, J.W.1
Dervan, P.B.2
-
10
-
-
0034830898
-
Molecular recognition of DNA by small molecules
-
Dervan P.B. Molecular recognition of DNA by small molecules. Bioorg. Med. Chem. 9 (2001) 2215-2235
-
(2001)
Bioorg. Med. Chem.
, vol.9
, pp. 2215-2235
-
-
Dervan, P.B.1
-
11
-
-
34247546098
-
REPSA: General combinatorial approach for identifying preferred ligand-DNA binding sequences
-
Van Dyke M.W., Van Dyke N., and Sunavala-Dossabhoy G. REPSA: General combinatorial approach for identifying preferred ligand-DNA binding sequences. Methods 42 (2007) 118-127
-
(2007)
Methods
, vol.42
, pp. 118-127
-
-
Van Dyke, M.W.1
Van Dyke, N.2
Sunavala-Dossabhoy, G.3
-
12
-
-
0038660999
-
Combinatorial determination of sequence specificity for nanomolar DNA-binding hairpin polyamides
-
Gopal Y.N.V., and Van Dyke M.W. Combinatorial determination of sequence specificity for nanomolar DNA-binding hairpin polyamides. Biochemistry 42 (2003) 6891-6903
-
(2003)
Biochemistry
, vol.42
, pp. 6891-6903
-
-
Gopal, Y.N.V.1
Van Dyke, M.W.2
-
13
-
-
0035876020
-
7]TANDEM determined using a universal footprinting substrate
-
7]TANDEM determined using a universal footprinting substrate. Anal. Biochem. 293 (2001) 246-250
-
(2001)
Anal. Biochem.
, vol.293
, pp. 246-250
-
-
Lavesa, M.1
Fox, K.R.2
-
14
-
-
33646831465
-
DNA sequence recognition by an imidazole-containing isopropyl-substituted thiazole polyamide (thiazotropsin B)
-
Hampshire A.J., Khairallah H., Khalaf A.I., Ebrahimabadi A.H., Waigh R.D., Suckling C.J., Brown T., and Fox K.R. DNA sequence recognition by an imidazole-containing isopropyl-substituted thiazole polyamide (thiazotropsin B). Bioorg. Med. Chem. Lett. 16 (2006) 3469-3474
-
(2006)
Bioorg. Med. Chem. Lett.
, vol.16
, pp. 3469-3474
-
-
Hampshire, A.J.1
Khairallah, H.2
Khalaf, A.I.3
Ebrahimabadi, A.H.4
Waigh, R.D.5
Suckling, C.J.6
Brown, T.7
Fox, K.R.8
-
15
-
-
15544389177
-
Sequence-selective interaction of the minor-groove interstrand cross-linking agent SJG-136 with naked and cellular DNA: Footprinting and enzyme inhibition studies
-
Martin C., Ellis T., Mcgurk C.J., Jenkins T.C., Hartley J.A., Waring M.J., and Thurston D.E. Sequence-selective interaction of the minor-groove interstrand cross-linking agent SJG-136 with naked and cellular DNA: Footprinting and enzyme inhibition studies. Biochemistry 44 (2005) 4135-4147
-
(2005)
Biochemistry
, vol.44
, pp. 4135-4147
-
-
Martin, C.1
Ellis, T.2
Mcgurk, C.J.3
Jenkins, T.C.4
Hartley, J.A.5
Waring, M.J.6
Thurston, D.E.7
-
16
-
-
1142274299
-
Characterization of a novel DNA minor-groove complex
-
Nguyen B., Hamelberg D., Bailly C., Colson P., Stanek J., Brun R., Neidle S., and Wilson W.D. Characterization of a novel DNA minor-groove complex. Biophys. J. 86 (2004) 1028-1041
-
(2004)
Biophys. J.
, vol.86
, pp. 1028-1041
-
-
Nguyen, B.1
Hamelberg, D.2
Bailly, C.3
Colson, P.4
Stanek, J.5
Brun, R.6
Neidle, S.7
Wilson, W.D.8
-
17
-
-
0347720652
-
DNA sequence dependent monomer-dimer binding modulation of asymmetric benzimidazole derivatives
-
Tanious F.A., Hamelberg D., Bailly C., Czarny A., Boykin D.W., and Wilson W.D. DNA sequence dependent monomer-dimer binding modulation of asymmetric benzimidazole derivatives. J. Am. Chem. Soc. 126 (2004) 143-153
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 143-153
-
-
Tanious, F.A.1
Hamelberg, D.2
Bailly, C.3
Czarny, A.4
Boykin, D.W.5
Wilson, W.D.6
-
18
-
-
0345254923
-
Cooperative dimerization of a heterocyclic diamidine determines sequence-specific DNA recognition
-
Tanious F., Wilson W.D., Wang L., Kumar A., Boykin D.W., Marty C., Baldeyrou B., and Bailly C. Cooperative dimerization of a heterocyclic diamidine determines sequence-specific DNA recognition. Biochemistry 42 (2003) 13576-13586
-
(2003)
Biochemistry
, vol.42
, pp. 13576-13586
-
-
Tanious, F.1
Wilson, W.D.2
Wang, L.3
Kumar, A.4
Boykin, D.W.5
Marty, C.6
Baldeyrou, B.7
Bailly, C.8
-
19
-
-
0141919748
-
DNA sequence recognition by bispyrazinonaphthalimides antitumor agents
-
Carrasco C., Joubert A., Tardy C., Maestre N., Cacho M., Brana M.F., and Bailly C. DNA sequence recognition by bispyrazinonaphthalimides antitumor agents. Biochemistry 42 (2003) 11751-11761
-
(2003)
Biochemistry
, vol.42
, pp. 11751-11761
-
-
Carrasco, C.1
Joubert, A.2
Tardy, C.3
Maestre, N.4
Cacho, M.5
Brana, M.F.6
Bailly, C.7
-
20
-
-
0037508509
-
Sequence-selective targeting of long stretches of the DNA minor groove by a novel dimeric bis-benzimidazole
-
Joubert A., Sun X.W., Johansson E., Bailly C., Mann J., and Neidle S. Sequence-selective targeting of long stretches of the DNA minor groove by a novel dimeric bis-benzimidazole. Biochemistry 42 (2003) 5984-5992
-
(2003)
Biochemistry
, vol.42
, pp. 5984-5992
-
-
Joubert, A.1
Sun, X.W.2
Johansson, E.3
Bailly, C.4
Mann, J.5
Neidle, S.6
-
21
-
-
0037446758
-
Chromophore-modified bisnaphthalimides: DNA recognition topoisomerase inhibition and cytotoxic properties of two mono- and bisfuronaphthalimides
-
Bailly C., Carrasco C., Joubert A., Bal C., Wattez N., Hildebrand M.P., Lansiaux A., Colson P., Houssier C., Cacho M., Ramos A., and Brana M.F. Chromophore-modified bisnaphthalimides: DNA recognition topoisomerase inhibition and cytotoxic properties of two mono- and bisfuronaphthalimides. Biochemistry 42 (2003) 4136-4150
-
(2003)
Biochemistry
, vol.42
, pp. 4136-4150
-
-
Bailly, C.1
Carrasco, C.2
Joubert, A.3
Bal, C.4
Wattez, N.5
Hildebrand, M.P.6
Lansiaux, A.7
Colson, P.8
Houssier, C.9
Cacho, M.10
Ramos, A.11
Brana, M.F.12
-
22
-
-
32544446308
-
A fast algorithm for the construction of universal footprinting templates in DNA
-
Anderson J.W., Fox K.R., and Niblo G.A. A fast algorithm for the construction of universal footprinting templates in DNA. J. Math. Biol. 52 (2006) 307-342
-
(2006)
J. Math. Biol.
, vol.52
, pp. 307-342
-
-
Anderson, J.W.1
Fox, K.R.2
Niblo, G.A.3
-
23
-
-
1542499131
-
Pentaprobe: A comprehensive sequence for the one-step detection of DNA-binding activities
-
Kwan A.H.Y., Czolij R., Mackay J.P., and Crossley M. Pentaprobe: A comprehensive sequence for the one-step detection of DNA-binding activities. Nucleic Acids Res. 31 (2003) e124
-
(2003)
Nucleic Acids Res.
, vol.31
-
-
Kwan, A.H.Y.1
Czolij, R.2
Mackay, J.P.3
Crossley, M.4
-
24
-
-
0018149852
-
Interaction between synthetic analogs of quinoxaline antibiotics and nucleic-acids: Changes in mechanism and specificity related to structural alterations
-
Lee J.S., and Waring M.J. Interaction between synthetic analogs of quinoxaline antibiotics and nucleic-acids: Changes in mechanism and specificity related to structural alterations. Biochem. J. 173 (1978) 129-144
-
(1978)
Biochem. J.
, vol.173
, pp. 129-144
-
-
Lee, J.S.1
Waring, M.J.2
-
25
-
-
0021773061
-
Sequence preferences in the binding to DNA of triostin A and TANDEM as reported by DNase-I footprinting
-
Low C.M.L., Olsen R.K., and Waring M.J. Sequence preferences in the binding to DNA of triostin A and TANDEM as reported by DNase-I footprinting. FEBS Lett. 176 (1984) 414-420
-
(1984)
FEBS Lett.
, vol.176
, pp. 414-420
-
-
Low, C.M.L.1
Olsen, R.K.2
Waring, M.J.3
-
26
-
-
0022636812
-
DNA-sequence recognition by under-methylated analogs of triostin A
-
Low C.M.L., Fox K.R., Olsen R.K., and Waring M.J. DNA-sequence recognition by under-methylated analogs of triostin A. Nucleic Acids Res. 14 (1986) 2015-2033
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 2015-2033
-
-
Low, C.M.L.1
Fox, K.R.2
Olsen, R.K.3
Waring, M.J.4
-
30
-
-
0028173451
-
7]TANDEM and triostin-A to DNA containing a CpI step
-
7]TANDEM and triostin-A to DNA containing a CpI step. Biochemistry 33 (1994) 12397-12404
-
(1994)
Biochemistry
, vol.33
, pp. 12397-12404
-
-
Addess, K.J.1
Feigon, J.2
-
31
-
-
0028670828
-
3]TANDEM complexes with DNA oligonucleotides
-
3]TANDEM complexes with DNA oligonucleotides. Nucleic Acids Res. 22 (1994) 5484-5491
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 5484-5491
-
-
Addess, K.J.1
Feigon, J.2
-
34
-
-
0032519952
-
DNA recognition by quinoxaline antibiotics: Use of base-modified DNA molecules to investigate determinants of sequence-specific binding of triostin A and TANDEM
-
Bailly C., and Waring M.J. DNA recognition by quinoxaline antibiotics: Use of base-modified DNA molecules to investigate determinants of sequence-specific binding of triostin A and TANDEM. Biochem. J. 330 (1998) 81-87
-
(1998)
Biochem. J.
, vol.330
, pp. 81-87
-
-
Bailly, C.1
Waring, M.J.2
-
35
-
-
24944438265
-
Efficient solid-phase-based total synthesis of the bisintercalator TANDEM
-
Malkinson J.P., Anim M.K., Zloh M., Searcey M., Hampshire A.J., and Fox K.R. Efficient solid-phase-based total synthesis of the bisintercalator TANDEM. J. Org. Chem. 70 (2005) 7654-7661
-
(2005)
J. Org. Chem.
, vol.70
, pp. 7654-7661
-
-
Malkinson, J.P.1
Anim, M.K.2
Zloh, M.3
Searcey, M.4
Hampshire, A.J.5
Fox, K.R.6
-
36
-
-
0029059536
-
DNA sequence preferences of several AT-selective minor groove binding ligands
-
Abu-Daya A., Brown P.M., and Fox K.R. DNA sequence preferences of several AT-selective minor groove binding ligands. Nucleic Acids Res. 23 (1995) 3385-3392
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 3385-3392
-
-
Abu-Daya, A.1
Brown, P.M.2
Fox, K.R.3
-
37
-
-
28544431620
-
Role of stacking interactions in the binding sequence preferences of DNA bis-intercalators: Insight from thermodynamic integration free energy simulations
-
Marco E., Negri A., Luque F.J., and Gago F. Role of stacking interactions in the binding sequence preferences of DNA bis-intercalators: Insight from thermodynamic integration free energy simulations. Nucleic Acids Res. 33 (2005) 6214-6224
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 6214-6224
-
-
Marco, E.1
Negri, A.2
Luque, F.J.3
Gago, F.4
|