Metals affect soil bacterial and fungal functional diversity differently

Environmental Toxicology and Chemistry

Volumn 27, Issue 3, 2008, Pages 591-598

  Stefanowicz, Anna M ^a   Niklińska, Maria ^a   Laskowski, Ryszard ^a  

^a JAGIELLONIAN UNIVERSITY   (Poland)

Author keywords

Biolog; Functional diversity; Metals; Pollution; Soil microorganisms

Indexed keywords

BACTERIA; BIODIVERSITY; BIOMASS; SMELTING; SOIL POLLUTION;

FUNCTIONAL DIVERSITY; SOIL MICROORGANISMS;

HEAVY METALS;

COPPER; HEAVY METAL; LEAD; NICKEL; ZINC;

BACTERIUM; BIOINDICATOR; BIOMASS; CONCENTRATION (COMPOSITION); FUNGUS; HEAVY METAL; MICROBIAL COMMUNITY; PH; POLLUTION EFFECT; SOIL MICROORGANISM; SOIL RESPIRATION;

ARTICLE; FOREST; FUNGAL BIOMASS; MICROBIAL BIOMASS; MICROBIAL DIVERSITY; MINING; NONHUMAN; NUTRIENT CONCENTRATION; PARAMETER; POLAND; PRIORITY JOURNAL; SMELTER; SOIL ACIDITY; SOIL POLLUTION; SOIL RESPIRATION; UNITED KINGDOM;

BACTERIA; FUNGI; METALS; SOIL; SOIL MICROBIOLOGY; SOIL POLLUTANTS;

AVONMOUTH; BRISTOL [BRISTOL (ADS)]; BRISTOL [ENGLAND]; CENTRAL EUROPE; CLYDACH; DOLNOSLASKIE; ENGLAND; EURASIA; EUROPE; GLOGOW; MALOPOLSKIE; OLKUSZ; POLAND; SOUTH WALES; SWANSEA [WALES]; UNITED KINGDOM; WALES; WESTERN EUROPE;

BACTERIA (MICROORGANISMS);

EID: 38949124223     PISSN: 07307268     EISSN: None     Source Type: Journal    
DOI: 10.1897/07-288.1     Document Type: Article

References (40)

1. Giller KE, Witter E, McGrath SP. 1998. Toxicity of heavy metals to microorganisms and microbial processes in agricultural soils: A review. Soil Biol Biochem 30:1389-1414.
2. Leita L, De Nobili M, Muhlbachova G, Mondini C, Marchiol L, Zerbi G. 1995. Bioavailability and effects of heavy metals on soil microbial biomass survival during laboratory incubation. Biol Fertil Soils 19:103-108.
3. Niklińska M, Laskowski R, Maryański M. 1998. Effects of heavy metals and storage time on two types of forest litter: Basal respiration rate and exchangeable metals. Ecotoxicol Environ Saf 41:8-18.
4. Bååth E, Díaz-Raviña M, Bakken LR. 2005. Microbial biomass, community structure, and metal tolerance of a naturally Pb-enriched forest soil. Microb Ecol 50:496-505.
5. MacArthur RH. 1955. Fluctuations of animal populations and a measure of community stability. Ecology 36:533-536.
6. Bell T, Newman JA, Silverman BW, Turner SL, Lilley AK. 2005. The contribution of species richness and composition to bacterial services. Nature 436:1157-1160.
7. Gans J, Wolinsky M, Dunbar J. 2005. Computational improvements reveal great bacterial diversity and high metal toxicity in soil. Science 309:1387-1390.
8. Schipper LA, Lee WG. 2004. Microbial biomass, respiration, and diversity in ultramafic soils of West Dome, New Zealand. Plant Soil 262:151-158.
9. Niklińska M, Chodak M, Laskowski R. 2006. Pollution-induced community tolerance of microorganisms from forest soil organic layers polluted with Zn or Cu. Appl Soil Ecol 32:265-272.
10. Dobranic JK, Zak JC. 1999. A microtiter plate procedure for evaluating fungal functional diversity. Mycologia 91:756-765.
11. Rasmussen LD, Sørensen SJ. 2001. Effects of mercury contamination on the culturable heterotrophic, functional, and genetic diversity of the bacterial community in soil. FEMS Microbiol Ecol 36:1-9.
12. Gremion F, Chatzinotas A, Kaufmann K, Von Sigler W, Harms H. 2004. Impacts of heavy metal contamination and phytore-mediation on a microbial community during a 12-month microcosm experiment. FEMS Microbiol Ecol 48:273-283.
13. Preston-Mafham J, Boddy L, Randerson PF. 2002. Analysis of microbial community functional diversity using sole-carbon-source utilization profiles - A critique. FEMS Microbiol Ecol 42:1-14.
14. Spurgeon DJ, Hopkin SP. 1996. The effects of metal contamination on earthworm populations around a smelting works: Quantifying species effects. Appl Soil Ecol 4:147-160.
15. Anderson JPE, Domsch KH. 1978. A physiological method for the quantitative measurement of microbial biomass in soils. Soil Biol Biochem 10:215-221.
16. Boivin MEY. 2005. Diversity of microbial communities in metal-polluted heterogeneous environments. PhD thesis. Vrije Universiteit, Amsterdam, The Netherlands.
17. Classen AT, Boyle SI, Haskins KE, Overby ST, Hart SC. 2003. Community-level physiological profiles of bacteria and fungi: Plate type and incubation temperature influences on contrasting soils. FEMS Microbiol Ecol 44:319-328.
18. Welp G. 1999. Inhibitory effects of the total and water-soluble concentrations of nine different metals on the dehydrogenase activity of a loess soil. Biol Fertil Soils 30:132-139.
19. Frostegård Å, Tunlid A, Bååth E. 1996. Changes in microbial community structure during long-term incubation in two soils experimentally contaminated with metals. Soil Biol Biochem 28:55-63.
20. Bååth E, Díaz-Raviña M, Frostegård Å, Campbell CD. 1998. Effect of metal-rich sludge amendments on the soil microbial community. Appl Environ Microbiol 64:238-245.
21. Kandeler E, Tscherko D, Bruce KD, Stemmer M, Hobbs PJ, Bardgett RD, Amelung W. 2000. Structure and function of the soil microbial community in microhabitats of a heavy metal polluted soil. Biol Fertil Soils 32:390-400.
22. Van Beelen P, Doelman P. 1997. Significance and application of microbial toxicity tests in assessing ecotoxicological risks of contaminants in soil and sediment. Chemosphere 34:455-499.
23. Rajapaksha RMCP, Tobor-Kapłon MA, Bååth E. 2004. Metal toxicity affects fungal and bacterial activities in soil differently. Appl Environ Microbiol 70:2966-2973.
24. Pennanen T, Frostegård Å, Fritze H, Bååth E. 1996. Phospholipid fatty acid composition and heavy metal tolerance of soil microbial communities along two heavy metal-polluted gradients in coniferous forests. Appl Environ Microbiol 62:420-428.
25. Van Elsas JD, Duarte GF, Keijzer-Wolters A, Smit E. 2000. Analysis of the dynamics of fungal communities in soil via fungal-specific PCR of soil DNA followed by denaturing gradient gel electrophoresis. J Microbiol Methods 43:133-151.
26. Møller J, Miller M, Kjøller A. 1999. Fungal-bacterial interaction on beech leaves: Influence on decomposition and dissolved organic carbon quality. Soil Biol Biochem 31:367-374.
27. Tobor-Kapłon MA, Bloem J, Römkens PFAM, de Ruiter PC. 2006. Functional stability of microbial communities in contaminated soils near a zinc smelter (Budel, The Netherlands). Ecotoxicology 15:187-197.
28. DeBoer W, Folman LB, Summerbell RC, Boddy L. 2005. Living in a fungal world: Impact of fungi on soil bacterial niche development. FEMS Microbiol Rev 29:795-811.
29. Cheng W, Zhang Q, Coleman DC, Carroll CR, Hoffman CA. 1996. Is available carbon limiting microbial respiration in the rhizosphere? Soil Biol Biochem 28:1283-1288.
30. Frostegård Å, Tunlid A, Bååth E. 1993. Phospholipid fatty acid composition, biomass, and activity of microbial communities from two soil types experimentally exposed to different heavy metals. Appl Environ Microbiol 59:3605-3617.
31. Prescott CE. 1996. Influence on forest floor type on rates of litter decomposition in microcosms. Soil Biol Biochem 28:1319-1325.
32. Berg B, Matzner E. 1997. Effect of N deposition on decomposition of plant litter and soil organic matter in forest systems. Environ Rev 5:1-25.
33. Berg B, Laskowski R. 2006. Litter Decomposition: A Guide to Carbon and Nutrient Turnover. Elsevier, San Diego, CA, USA.
34. Tuomela M, Vikman M, Hatakka A, Itävaara M. 2000. Biodegradation of lignin in a compost environment: A review. Biores Technol 72:169-183.
35. 14C-labeled synthetic lignin and ligninolytic enzyme activities of litter-decomposing basidiomycetous fungi. Appl Microbiol Biotechnol 54:819-825.
36. Lin Q, Brookes PC. 1999. An evaluation of the substrate-induced respiration method. Soil Biol Biochem 31:1969-1983.
37. 2 of microbial communities in forest soils. Soil Biol Biochem 30:1269-1274.
38. Niklińska M, Chodak M, Laskowski R. 2005. Characterization of the forest humus microbial community in a heavy metal-polluted area. Soil Biol Biochem 37:2185-2194.
39. Bååth E, Anderson T-H. 2003. Comparison of soil fungal/bacterial ratios in a pH gradient using physiological and PLFA-based techniques. Soil Biol Biochem 35:955-963.
40. Anderson JPE, Domsch KH. 1973. Quantification of bacterial and fungal contributions to soil respiration. Arch Microbiol 93:113-127.