Modeling plant mRNA poly(A) sites: Software design and implementation

Journal of Computational and Theoretical Nanoscience

Volumn 4, Issue 7-8, 2007, Pages 1365-1368

  Ji, Guoli ^a   Wu, Xiaohui ^a   Zheng, Jianti ^a   Shen, Yingjia ^b   Li, Qingshun Quinn ^b  

^a XIAMEN UNIVERSITY   (China)

^b MIAMI UNIVERSITY   (United States)

Author keywords

GHMM; Pass; Poly(A) site; Polyadenylation; Prediction

Indexed keywords

BINDING SITES; BIOINFORMATICS; BIOLOGY; COMPUTER SIMULATION; GENE EXPRESSION; HIDDEN MARKOV MODELS; SOFTWARE DESIGN;

COMPUTER RECOGNITION MODEL; GENERALIZED HIDDEN MARKOV MODEL; POLYADENYLATION;

RNA;

EID: 38849209178     PISSN: 15461955     EISSN: None     Source Type: Journal    
DOI: 10.1166/jctn.2007.2425     Document Type: Article

References (8)

1. C. Burge and S. Karlin, Mol. Biol. 268, 78 (1997).
2. D. Kulp, D. Haussler, M. G. Reese, and F. H. Eeckman, ISMB-96: Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, edited by D. States, P. Agarwal, T. Gaasterland, L. Hunter, and R. F. Smith, AAI Press (1996), pp. 134-141.
3. M. G. Reese, D. Kulp, H. Tammana, and D. Haussler, Genome Res. 10, 529 (2000).
4. A. Krogh, Genome Res. 10, 523 (2000).
5. J. C. Loke, E. A. Stahlberg, D. G. Strenski, B. J. Haas, P. C. Wood, and Q. Q. Li, Plant Physiol. 138, 1457 (2005).
6. Y. Lu, C. Gao, and B. Han, Chin. Sci. Bull. 51, 7 (2006).
7. G. Ji, J. Zheng, Y. Shen, X. Wu, R. Jiang, Y. Lin, J. C. Loke, K. M. Davis, G. J. Reese, and Q. Q. Li, BMC Bioinformatics 8, 43 ( 2007).
8. J. H. Graber, G. D. McAllister, and T. L. Smith, Nucleic Acids Res. 8, 1851 (2002).