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Volumn 1777, Issue 2, 2008, Pages 140-153

Access channels and methanol binding site to the CaMn4 cluster in Photosystem II based on solvent accessibility simulations, with implications for substrate water access

Author keywords

Channel; H+ exit pathway; O2 exit pathway; Photosystem II; Solvent contact surface; Substrate water access

Indexed keywords

HYDROGEN; MANGANESE; METHANOL; OXYGEN; SOLVENT; WATER;

EID: 38849188029     PISSN: 00052728     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbabio.2007.08.009     Document Type: Article
Times cited : (146)

References (67)
  • 1
    • 0035808704 scopus 로고    scopus 로고
    • Photosynthetic water oxidation to molecular oxygen: apparatus and mechanism
    • Renger G. Photosynthetic water oxidation to molecular oxygen: apparatus and mechanism. Biochim. Biophys. Acta 1503 (2001) 210-228
    • (2001) Biochim. Biophys. Acta , vol.1503 , pp. 210-228
    • Renger, G.1
  • 4
    • 33751424725 scopus 로고    scopus 로고
    • Water-splitting chemistry of Photosystem II
    • McEvoy J.P., and Brudvig G.W. Water-splitting chemistry of Photosystem II. Chem. Rev. 106 (2006) 4455-4483
    • (2006) Chem. Rev. , vol.106 , pp. 4455-4483
    • McEvoy, J.P.1    Brudvig, G.W.2
  • 5
    • 0035808699 scopus 로고    scopus 로고
    • Nugent J. (Ed)
    • In: Nugent J. (Ed). Special Issue: Photosynthetic Water Oxidation. Biochim. Biophys. Acta vol. 1503 (2001) 1-259
    • (2001) Biochim. Biophys. Acta , vol.1503 , pp. 1-259
  • 6
    • 38849150542 scopus 로고    scopus 로고
    • Tommos C., Brzezinski P., and Ehrenberg A. (Eds)
    • In: Tommos C., Brzezinski P., and Ehrenberg A. (Eds). Special issue dedicated to Jerry Babcock. Biochim. Biophys. Acta vol. 1655 (2004) 1-413
    • (2004) Biochim. Biophys. Acta , vol.1655 , pp. 1-413
  • 7
    • 8144227878 scopus 로고    scopus 로고
    • Messinger J., and Lubitz W. (Eds)
    • In: Messinger J., and Lubitz W. (Eds). Special Issue: Biophysical Studies on Photosystem II and Related Model Systems. Phys. Chem. Chem. Phys. vol. 6 (2004) 4733-4911
    • (2004) Phys. Chem. Chem. Phys. , vol.6 , pp. 4733-4911
  • 8
    • 33751403875 scopus 로고    scopus 로고
    • Nield J., and Nixon P.J. (Eds)
    • In: Nield J., and Nixon P.J. (Eds). Special Issue Dedicated to James Barber. Photochem. Photbiol. Sci. vol. 4 (2005) 916-1096
    • (2005) Photochem. Photbiol. Sci. , vol.4 , pp. 916-1096
  • 9
    • 34547662239 scopus 로고    scopus 로고
    • Allakhverdiev S.I., Aro E.M., Klimov V.V., Nagata T., Satoh K., Shuvalov V.A., Telfer A., and Wydrzynski T. (Eds)
    • In: Allakhverdiev S.I., Aro E.M., Klimov V.V., Nagata T., Satoh K., Shuvalov V.A., Telfer A., and Wydrzynski T. (Eds). Special Issue: Structure and Function of Photosystems. Biochim. Biophys. Acta vol. 1767 (2007) 401-882
    • (2007) Biochim. Biophys. Acta , vol.1767 , pp. 401-882
  • 11
    • 30744445692 scopus 로고    scopus 로고
    • Towards complete cofactor arrangement in the 3.0 angstrom resolution structure of Photosystem II
    • Loll B., Kern J., Saenger W., Zouni A., and Biesiadka J. Towards complete cofactor arrangement in the 3.0 angstrom resolution structure of Photosystem II. Nature 438 (2005) 1040-1044
    • (2005) Nature , vol.438 , pp. 1040-1044
    • Loll, B.1    Kern, J.2    Saenger, W.3    Zouni, A.4    Biesiadka, J.5
  • 12
    • 34547116864 scopus 로고    scopus 로고
    • Structural characteristics of channels and pathways in Photosystem II including the identification of an oxygen channel
    • Murray J.W., and Barber J. Structural characteristics of channels and pathways in Photosystem II including the identification of an oxygen channel. J. Struct. Biol. 159 (2007) 228-237
    • (2007) J. Struct. Biol. , vol.159 , pp. 228-237
    • Murray, J.W.1    Barber, J.2
  • 14
    • 0028904088 scopus 로고
    • The effect of environment on the stability of an integral membrane helix-molecular-dynamics simulations of surfactant protein-C in chloroform, methanol and water
    • Kovacs H., Mark A.E., Johansson J., and van Gunsteren W.F. The effect of environment on the stability of an integral membrane helix-molecular-dynamics simulations of surfactant protein-C in chloroform, methanol and water. J. Mol. Biol. 247 (1995) 808-822
    • (1995) J. Mol. Biol. , vol.247 , pp. 808-822
    • Kovacs, H.1    Mark, A.E.2    Johansson, J.3    van Gunsteren, W.F.4
  • 15
    • 0031972564 scopus 로고    scopus 로고
    • Solvent influence on base stacking
    • Norberg J., and Nilsson L. Solvent influence on base stacking. Biophys. J. 74 (1998) 394-402
    • (1998) Biophys. J. , vol.74 , pp. 394-402
    • Norberg, J.1    Nilsson, L.2
  • 16
    • 0032583539 scopus 로고    scopus 로고
    • ESEEM studies of alcohol binding to the manganese cluster of the oxygen evolving complex of Photosystem II
    • Force D.A., Randall D.W., Lorigan G.A., Clemens K.L., and Britt R.D. ESEEM studies of alcohol binding to the manganese cluster of the oxygen evolving complex of Photosystem II. J. Am. Chem. Soc. 120 (1998) 13321-13333
    • (1998) J. Am. Chem. Soc. , vol.120 , pp. 13321-13333
    • Force, D.A.1    Randall, D.W.2    Lorigan, G.A.3    Clemens, K.L.4    Britt, R.D.5
  • 17
    • 33745019085 scopus 로고    scopus 로고
    • ESEEM studies of substrate water and small alcohol binding to the oxygen-evolving complex of Photosystem II during functional turnover
    • Åhrling K.A., Evans M.C.W., Nugent J.H.A., Ball R.J., and Pace R.J. ESEEM studies of substrate water and small alcohol binding to the oxygen-evolving complex of Photosystem II during functional turnover. Biochemistry 45 (2006) 7069-7082
    • (2006) Biochemistry , vol.45 , pp. 7069-7082
    • Åhrling, K.A.1    Evans, M.C.W.2    Nugent, J.H.A.3    Ball, R.J.4    Pace, R.J.5
  • 18
    • 0037035522 scopus 로고    scopus 로고
    • pH dependence of the four individual transitions in the catalytic S-cycle during photosynthetic oxygen evolution
    • Bernát G., Morvaridi F., Feyziyev Y., and Styring S. pH dependence of the four individual transitions in the catalytic S-cycle during photosynthetic oxygen evolution. Biochemistry 41 (2002) 5830-5843
    • (2002) Biochemistry , vol.41 , pp. 5830-5843
    • Bernát, G.1    Morvaridi, F.2    Feyziyev, Y.3    Styring, S.4
  • 21
    • 0037195341 scopus 로고    scopus 로고
    • Electron, proton and hydrogen-atom transfers in photosynthetic water oxidation
    • Tommos C. Electron, proton and hydrogen-atom transfers in photosynthetic water oxidation. Philos. Trans. R. Soc. Lond., B Biol. Sci. 357 (2002) 1383-1394
    • (2002) Philos. Trans. R. Soc. Lond., B Biol. Sci. , vol.357 , pp. 1383-1394
    • Tommos, C.1
  • 22
    • 33746308472 scopus 로고    scopus 로고
    • The catalytic manganese cluster: protein ligation
    • Wydrzynski T., and Satoh K. (Eds), Springer, The Netherlands
    • Debus R.J. The catalytic manganese cluster: protein ligation. In: Wydrzynski T., and Satoh K. (Eds). Photosystem II: The Light-driven Water: Plastoquinone Oxidoreductase (2005), Springer, The Netherlands 261-284
    • (2005) Photosystem II: The Light-driven Water: Plastoquinone Oxidoreductase , pp. 261-284
    • Debus, R.J.1
  • 23
    • 34147161261 scopus 로고    scopus 로고
    • Quantum mechanics/molecular mechanics structural models of the oxygen-evolving complex of Photosystem II
    • Sproviero E.M., Gascon J.A., McEvoy J.P., Brudvig G.W., and Batista V.S. Quantum mechanics/molecular mechanics structural models of the oxygen-evolving complex of Photosystem II. Curr. Opin. Struct. Biol. 17 (2007) 173-180
    • (2007) Curr. Opin. Struct. Biol. , vol.17 , pp. 173-180
    • Sproviero, E.M.1    Gascon, J.A.2    McEvoy, J.P.3    Brudvig, G.W.4    Batista, V.S.5
  • 28
    • 4243989332 scopus 로고
    • 2 state of the oxygen-evolving complex of Photosystem-II
    • 2 state of the oxygen-evolving complex of Photosystem-II. Biochemistry 25 (1986) 4609-4615
    • (1986) Biochemistry , vol.25 , pp. 4609-4615
    • Zimmermann, J.L.1    Rutherford, A.W.2
  • 29
    • 0025760859 scopus 로고
    • EPR saturation and temperature-dependence studies on signals from the oxygen-evolving center of Photosystem-II
    • Pace R.J., Smith P., Bramley R., and Stehlik D. EPR saturation and temperature-dependence studies on signals from the oxygen-evolving center of Photosystem-II. Biochim. Biophys. Acta 1058 (1991) 161-170
    • (1991) Biochim. Biophys. Acta , vol.1058 , pp. 161-170
    • Pace, R.J.1    Smith, P.2    Bramley, R.3    Stehlik, D.4
  • 31
    • 0029941460 scopus 로고    scopus 로고
    • Conversion of the spin state of the manganese complex in Photosystem II induced by near-infrared light
    • Boussac A., Girerd J.J., and Rutherford A.W. Conversion of the spin state of the manganese complex in Photosystem II induced by near-infrared light. Biochemistry 35 (1996) 6984-6989
    • (1996) Biochemistry , vol.35 , pp. 6984-6989
    • Boussac, A.1    Girerd, J.J.2    Rutherford, A.W.3
  • 34
    • 0033552275 scopus 로고    scopus 로고
    • Identification of the near-infrared absorption band from the Mn cluster of Photosystem II
    • Baxter R., Krausz E., Wydrzynski T., and Pace R.J. Identification of the near-infrared absorption band from the Mn cluster of Photosystem II. J. Am. Chem. Soc. 121 (1999) 9451-9452
    • (1999) J. Am. Chem. Soc. , vol.121 , pp. 9451-9452
    • Baxter, R.1    Krausz, E.2    Wydrzynski, T.3    Pace, R.J.4
  • 35
    • 0037065695 scopus 로고    scopus 로고
    • Magneto-optical measurements of the pigments in fully active Photosystem II core complexes from plants
    • Smith P.J., Peterson S., Masters V.M., Wydrzynski T., Styring S., Krausz E., and Pace R.J. Magneto-optical measurements of the pigments in fully active Photosystem II core complexes from plants. Biochemistry 41 (2002) 1981-1989
    • (2002) Biochemistry , vol.41 , pp. 1981-1989
    • Smith, P.J.1    Peterson, S.2    Masters, V.M.3    Wydrzynski, T.4    Styring, S.5    Krausz, E.6    Pace, R.J.7
  • 37
    • 0035808689 scopus 로고    scopus 로고
    • The tetra-manganese complex of Photosystem II during its redox cycle-X-ray absorption results and mechanistic implications
    • Dau H., Iuzzolino L., and Dittmer J. The tetra-manganese complex of Photosystem II during its redox cycle-X-ray absorption results and mechanistic implications. Biochim. Biophys. Acta 1503 (2001) 24-39
    • (2001) Biochim. Biophys. Acta , vol.1503 , pp. 24-39
    • Dau, H.1    Iuzzolino, L.2    Dittmer, J.3
  • 38
    • 0035808667 scopus 로고    scopus 로고
    • X-ray spectroscopy-based structure of the Mn cluster and mechanism of photosynthetic oxygen evolution
    • Robblee J.H., Cinco R.M., and Yachandra V.K. X-ray spectroscopy-based structure of the Mn cluster and mechanism of photosynthetic oxygen evolution. Biochim. Biophys. Acta 1503 (2001) 7-23
    • (2001) Biochim. Biophys. Acta , vol.1503 , pp. 7-23
    • Robblee, J.H.1    Cinco, R.M.2    Yachandra, V.K.3
  • 39
    • 0036357745 scopus 로고    scopus 로고
    • An evaluation of structural models for the photosynthetic water-oxidizing complex derived from spectroscopic and X-ray diffraction signatures
    • Carrell T.G., Tyryshkin A.M., and Dismukes G.C. An evaluation of structural models for the photosynthetic water-oxidizing complex derived from spectroscopic and X-ray diffraction signatures. J. Biol. Inorg. Chem. 7 (2002) 2-22
    • (2002) J. Biol. Inorg. Chem. , vol.7 , pp. 2-22
    • Carrell, T.G.1    Tyryshkin, A.M.2    Dismukes, G.C.3
  • 40
    • 12544257799 scopus 로고    scopus 로고
    • Structural changes of D1 C-terminal alpha-carboxylate during S-state cycling in photosynthetic oxygen evolution
    • Kimura Y., Mizusawa N., Yamanari T., Ishii A., and Ono T. Structural changes of D1 C-terminal alpha-carboxylate during S-state cycling in photosynthetic oxygen evolution. J. Biol. Chem. 280 (2005) 2078-2083
    • (2005) J. Biol. Chem. , vol.280 , pp. 2078-2083
    • Kimura, Y.1    Mizusawa, N.2    Yamanari, T.3    Ishii, A.4    Ono, T.5
  • 44
    • 33645552565 scopus 로고    scopus 로고
    • Identification of a calcium-binding site in the PsbO protein of Photosystem II
    • Murray J.W., and Barber J. Identification of a calcium-binding site in the PsbO protein of Photosystem II. Biochemistry 45 (2006) 4128-4130
    • (2006) Biochemistry , vol.45 , pp. 4128-4130
    • Murray, J.W.1    Barber, J.2
  • 45
    • 33144471312 scopus 로고    scopus 로고
    • Energetics of a possible proton exit pathway for water oxidation in Photosystem II
    • Ishikita H., Saenger W., Loll B., Biesiadka J., and Knapp E.W. Energetics of a possible proton exit pathway for water oxidation in Photosystem II. Biochemistry 45 (2006) 2063-2071
    • (2006) Biochemistry , vol.45 , pp. 2063-2071
    • Ishikita, H.1    Saenger, W.2    Loll, B.3    Biesiadka, J.4    Knapp, E.W.5
  • 46
    • 8144221721 scopus 로고    scopus 로고
    • xCa structures for the catalytic site and spectroscopic data
    • xCa structures for the catalytic site and spectroscopic data. Phys. Chem. Chem. Phys. 6 (2004) 4764-4771
    • (2004) Phys. Chem. Chem. Phys. , vol.6 , pp. 4764-4771
    • Messinger, J.1
  • 47
    • 0035846819 scopus 로고    scopus 로고
    • Does functional Photosystem II complex have an oxygen channel?
    • Anderson J.M. Does functional Photosystem II complex have an oxygen channel?. FEBS Lett. 488 (2001) 1-4
    • (2001) FEBS Lett. , vol.488 , pp. 1-4
    • Anderson, J.M.1
  • 49
    • 0024678988 scopus 로고
    • Photosystem II, the water-splitting enzyme
    • Rutherford A.W. Photosystem II, the water-splitting enzyme. Trends Biochem. Sci. 14 (1989) 227-232
    • (1989) Trends Biochem. Sci. , vol.14 , pp. 227-232
    • Rutherford, A.W.1
  • 50
    • 0024367788 scopus 로고
    • A calcium-specific site influences the structure and activity of the manganese cluster responsible for photosynthetic water oxidation
    • Sivaraja M., Tso J., and Dismukes G.C. A calcium-specific site influences the structure and activity of the manganese cluster responsible for photosynthetic water oxidation. Biochemistry 28 (1989) 9459-9464
    • (1989) Biochemistry , vol.28 , pp. 9459-9464
    • Sivaraja, M.1    Tso, J.2    Dismukes, G.C.3
  • 51
    • 0025008019 scopus 로고
    • Histidine oxidation in the oxygen-evolving Photosystem II enzyme
    • Boussac A., Zimmermann J.L., Rutherford A.W., and Lavergne J. Histidine oxidation in the oxygen-evolving Photosystem II enzyme. Nature 347 (1990) 303-306
    • (1990) Nature , vol.347 , pp. 303-306
    • Boussac, A.1    Zimmermann, J.L.2    Rutherford, A.W.3    Lavergne, J.4
  • 53
    • 38849152406 scopus 로고
    • Inorganic ions affect reductant-mediated inhibition of the manganese cluster of PSII
    • Baltscheffsky M. (Ed), Kluwer Academic Publishers, The Netherlands
    • Mei R., and Yocum C.F. Inorganic ions affect reductant-mediated inhibition of the manganese cluster of PSII. In: Baltscheffsky M. (Ed). Current Research in Photosynthesis vol. I (1990), Kluwer Academic Publishers, The Netherlands 729-732
    • (1990) Current Research in Photosynthesis , vol.I , pp. 729-732
    • Mei, R.1    Yocum, C.F.2
  • 54
    • 0025815921 scopus 로고
    • Calcium limits substrate accessibility or reactivity at the manganese cluster in photosynthetic water oxidation
    • Tso J., Sivaraja M., and Dismukes G.C. Calcium limits substrate accessibility or reactivity at the manganese cluster in photosynthetic water oxidation. Biochemistry 30 (1991) 4734-4739
    • (1991) Biochemistry , vol.30 , pp. 4734-4739
    • Tso, J.1    Sivaraja, M.2    Dismukes, G.C.3
  • 55
    • 0030042115 scopus 로고    scopus 로고
    • On the functional significance of substrate accessibility in the photosynthetic water oxidation mechanism
    • Wydrzynski T., Hillier W., and Messinger J. On the functional significance of substrate accessibility in the photosynthetic water oxidation mechanism. Physiol. Plant. 96 (1996) 342-350
    • (1996) Physiol. Plant. , vol.96 , pp. 342-350
    • Wydrzynski, T.1    Hillier, W.2    Messinger, J.3
  • 56
    • 20544474056 scopus 로고    scopus 로고
    • Influence of the 33 kDa manganese-stabilizing protein on the structure and substrate accessibility of the oxygen-evolving complex of Photosystem II
    • Gregor W.G., Cinco R.M., Yu H., Yachandra V.K., and Britt R.D. Influence of the 33 kDa manganese-stabilizing protein on the structure and substrate accessibility of the oxygen-evolving complex of Photosystem II. Biochemistry 44 (2005) 8817-8825
    • (2005) Biochemistry , vol.44 , pp. 8817-8825
    • Gregor, W.G.1    Cinco, R.M.2    Yu, H.3    Yachandra, V.K.4    Britt, R.D.5
  • 57
    • 8144228771 scopus 로고    scopus 로고
    • Substrate water interactions within the Photosystem II oxygen evolving complex
    • Hillier W., and Wydrzynski T. Substrate water interactions within the Photosystem II oxygen evolving complex. Phys. Chem. Chem. Phys. 6 (2004) 4882-4889
    • (2004) Phys. Chem. Chem. Phys. , vol.6 , pp. 4882-4889
    • Hillier, W.1    Wydrzynski, T.2
  • 58
    • 0034681951 scopus 로고    scopus 로고
    • 2 evolving complex of Photosystem II vary independently during S-state turnover
    • 2 evolving complex of Photosystem II vary independently during S-state turnover. Biochemistry 39 (2000) 4399-4405
    • (2000) Biochemistry , vol.39 , pp. 4399-4405
    • Hillier, W.1    Wydrzynski, T.2
  • 60
    • 33746555334 scopus 로고    scopus 로고
    • Z and substrate water in active Photosystem II
    • Z and substrate water in active Photosystem II. Biochim. Biophys. Acta 1757 (2006) 781-786
    • (2006) Biochim. Biophys. Acta , vol.1757 , pp. 781-786
    • Zhang, C.X.1
  • 61
    • 0025298292 scopus 로고
    • Structure of donor side components in Photosystem II predicted by computer modeling
    • Svensson B., Vass I., Cedergren E., and Styring S. Structure of donor side components in Photosystem II predicted by computer modeling. EMBO J. 9 (1990) 2051-2059
    • (1990) EMBO J. , vol.9 , pp. 2051-2059
    • Svensson, B.1    Vass, I.2    Cedergren, E.3    Styring, S.4
  • 62
    • 0026215160 scopus 로고
    • Sequence-analysis of the D1 and D2 reaction center proteins of Photosystem II
    • Svensson B., Vass I., and Styring S. Sequence-analysis of the D1 and D2 reaction center proteins of Photosystem II. Z. Naturforsch., C: Biosci. 46 (1991) 765-776
    • (1991) Z. Naturforsch., C: Biosci. , vol.46 , pp. 765-776
    • Svensson, B.1    Vass, I.2    Styring, S.3
  • 63
    • 0031973948 scopus 로고    scopus 로고
    • Oxygen and proton pathways in cytochrome c oxidase
    • Hofacker I., and Schulten K. Oxygen and proton pathways in cytochrome c oxidase. Proteins 30 (1998) 100-107
    • (1998) Proteins , vol.30 , pp. 100-107
    • Hofacker, I.1    Schulten, K.2
  • 65
    • 0035861454 scopus 로고    scopus 로고
    • Water permeation across biological membranes: mechanism and dynamics of aquaporin-1 and GlpF
    • de Groot B.L., and Grubmuller H. Water permeation across biological membranes: mechanism and dynamics of aquaporin-1 and GlpF. Science 294 (2001) 2353-2357
    • (2001) Science , vol.294 , pp. 2353-2357
    • de Groot, B.L.1    Grubmuller, H.2
  • 66
    • 0141534474 scopus 로고    scopus 로고
    • The mechanism of proton exclusion in the aquaporin-1 water channel
    • de Groot B.L., Frigato T., Helms V., and Grubmuller H. The mechanism of proton exclusion in the aquaporin-1 water channel. J. Mol. Biol. 333 (2003) 279-293
    • (2003) J. Mol. Biol. , vol.333 , pp. 279-293
    • de Groot, B.L.1    Frigato, T.2    Helms, V.3    Grubmuller, H.4
  • 67
    • 33746601087 scopus 로고    scopus 로고
    • Design principles of proton-pumping haem-copper oxidases
    • Brzezinski P., and Adelroth P. Design principles of proton-pumping haem-copper oxidases. Curr. Opin. Struct. Biol. 16 (2006) 465-472
    • (2006) Curr. Opin. Struct. Biol. , vol.16 , pp. 465-472
    • Brzezinski, P.1    Adelroth, P.2


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