The large-scale structure of metabolic networks: A glimpse at life's origin?

Complexity

Volumn 8, Issue 1, 2002, Pages 15-19

  Wagner, Andreas ^a  

^a UNIVERSITY OF NEW MEXICO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 38849158070     PISSN: 10762787     EISSN: 10990526     Source Type: Journal    
DOI: 10.1002/cplx.10046     Document Type: Article

References (27)

1. Neidhardt, F.C. Escherichia coli and Salmonella. ASM Press: Washington, DC, 1996.
2. Karp, P.; Riley, M.; Paley, S.; Pellegrini-Toole, A.; Krummenacker, M. EcoCyc: Electronic encyclopedia of E. coli genes and metabolism. Nucleic Acids Res 1999, 27, 55.
3. Ogata, H., Goto, S. et al. KEGG-Kyoto Encyclopedia of genes and genomes. Nucleic Acids Research 27, 29–34, 1999.
4. Fell, D.; Wagner, A. The small world of metabolism. Nat Biotechnol 2000, 18, 1121–1122.
5. Wagner, A.; Fell, D. The small world inside large metabolic networks. Proc Roy Soc London Ser B 2001, 280, 1803–1810.
6. Graham, R.L.; Groetschel, M.; Lovasz, L. Handbook of combinatorics. MIT Press: Cambridge, 1995.
7. Watts, D.J. Small Worlds. Princeton University Press: Princeton, NJ, 1999.
8. Jeong, H.; Tombor, B.; Albert, R.; Oltvai, Z.N., Barabasi, A.L. The large-scale organization of metabolic networks. Nature 2000, 407, 651–654.
9. Albert, R.; Jeong, H., Barabasi, A.L. Error and attack tolerance of complex networks. Nature 2000, 406, 378–382.
10. Easterby, J.S. The effect of feedback on pathway transient-response. Biochem J 1986, 233, 871–875.
11. Schuster, S.; Heinrich, R. Time hierarchy in enzymatic—reaction chains resulting from optimality principles. J Theor Biol 1987, 129, 189–209.
12. Cascante, M.; Melendezhevia, E.; Kholodenko, B.; Sicilia, J.; Kacser, H. Control analysis of transit-time for free and enzyme-bound metabolites: Physiological and evolutionary significance of metabolic response-times. Biochem J 1995, 308, 895–899.
13. Gleiss, P.M.; Stadler, P.F.; Wagner, A.; Fell, D.A. Small cycles in small worlds. Adv Complex Systems 2001, 4, 207–226.
14. Barabasi, A.L.; Albert, R.; Jeong, H. Mean-field theory for scale-free random networks. Physica A 1999, 272, 173–187.
15. Albert, R.; Barabasi, A.-L. Statistical mechanics of complex networks. 2002, 74(1), 47–97.
16. Benner, S.A.; Ellington, A.D.; Tauer, A. Modern metabolism as a palimpsest of the RNA world. Proc Natl Acad Sci USA 1989, 86, 7054–7058.
17. Wachtershauser, G. Before enzymes and templates: Theory of surface metabolism. Microbiol Rev 1988, 52, 452–484.
18. Kuhn, H.; Waser, J. On the origin of the genetic code. FEBS Lett 1994, 352, 259–264.
19. Taylor, B.L.; Coates, D. The code within the codons. Biosystems 1989, 22, 177–187.
20. Morowitz, H.J. Beginnings of cellular life. Yale University Press: New Haven, 1992.
21. Waddell, T.G.; Bruce, G.K. A new theory on the origin and evolution of the citric acid cycle. Microbiol Sem 1995, 11, 243–250.
22. Lahav, N. Biogenesis. Oxford University Press: New York, 1999.
23. Hughes, T.R.; Marton, M.J.; Jones, A.R.; Roberts, C.J.; Stoughton, R.; Armour, C.D.; Bennett, H.A.; Coffey, E.; Dai, H.Y.; He, Y.D.D.; Kidd, M.J.; King, A.M.; Meyer, M.R.; Slade, D.; Lum, P.Y.; Stepaniants, S.B.; Shoemaker, D.D.; Gachotte, D.; Chakraburtty, K.; Simon, J.; Bard, M.; Friend, S.H. Functional discovery via a compendium of expression profiles. Cell 2000, 102, 109–126.
24. Uetz, P.; Giot, L.; Cagney, G.; Mansfield, T.A.; Judson, R.S.; Knight, J.R.; Lockshon, D.; Narayan, V.; Srinivasan, M.; Pochart, P.; QureshiEmili, A.; Li, Y.; Godwin, B.; Conover, D.; Kalbfleisch, T.; Vijayadamodar, G.; Yang, M.J.; Johnston, M.; Fields, S.; Rothberg, J.M. A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 2000, 403, 623–627.
25. Ito, T.; Chiba, T.; Ozawa, R.; Yoshida, M.; Hattori, M.; Sakaki, Y. A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci USA 2001, 98, 4569–4574.
26. Jeong, H.; Mason, S.P.; Barabasi, A.-L.; Oltvai, Z.N. Lethality and centrality in protein networks. Nature 2001, 411, 41–42.
27. Wagner, A. The yeast protein interaction network evolves rapidly and contains few redundant duplicate genes. Mol Biol and Evol 2001, 18, 1283–1292.