Identification and detection of Macrophomina phaseolina by using species-specific oligonucleotide primers and probe

Mycologia

Volumn 99, Issue 6, 2007, Pages 797-803

  Babu, Bandamaravuri Kishore ^a   Saxena, Anil K ^a   Srivastava, Alok K ^a   Arora, Dilip K ^a  

^a ICAR NATIONAL BUREAU OF AGRICULTURALLY IMPORTANT MICROORGANISMS   (India)

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL DNA; PRIMER DNA; RIBOSOMAL SPACER DNA;

DETECTION METHOD; FUNGUS; IDENTIFICATION KEY; PATHOGEN; POLYMERASE CHAIN REACTION;

ARTICLE; ASCOMYCETES; CHEMISTRY; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; METHODOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SENSITIVITY AND SPECIFICITY;

ASCOMYCOTA; DNA PRIMERS; DNA, FUNGAL; DNA, RIBOSOMAL SPACER; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, DNA;

MACROPHOMINA PHASEOLINA;

EID: 38849128038     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/mycologia.99.6.797     Document Type: Article

References (25)

1. Arora DK, Hirsch PR, Kerry BR. 1996. PCR-based molecular discrimination of Verticillium chlamydosporium isolates. Mycol Res 100:801-809.
2. Bruns TD, White TJ, Taylor JW. 1991. Fungal molecular systematicis. Ann Rev Ecol Syst 22:525-564.
3. Byadgi AS, Hegde RK. 1985. Variations among the isolates of Rhizoctonia bataticola from different host plants. Indian Phytopathology 38:297-301.
4. Cloud GL, Rupe JC. 1991. Comparison of three media for enumeration of sclerotia of Macrophomina phaseolina. Plant Disease 75:771-772.
5. Das IK, Fakrudin B, Arora DK. 2006. RAPD cluster analysis and chlorate sensitivity of some Indian isolates Macrophomina phaseolina from sorghum and their relationships with pathogenicity. Microbiol Res. Jun 27.
6. Edel V, Steinberg C, Gautheron N, Alabouvette C. 2000. Ribosomal DNA-targeted oligonucleotide probe and PCR assay specific for Fusarium oxysporum. Mycol Res 104:518-526.
7. Gardes M, Bruns TD. 1993. ITS primers with enhanced specificity for basidiomycetes application to the identification of Mycorrhizae and rusts. Molecular Ecology 2:113-118.
8. Irina S Druzhinina, Alexei G Kopchinskiy, Monika Komon, John Bissett, George Szakacs, Christian P Kubicek. 2005. An oligonucleotide barcode for species identification in Trichoderma and Hypocrea. Fungal Genetics and Biology 42:813-828.
9. Jana TK, Singh NK, Koundal KR, Sharma TR. 2005a. Genetic differentiation of charcoal rot pathogen, Macrophomina phaseolina, in to specific groups using URP-PCR. Can J Microbiol 51:159-164.
10. _, Sharma TR, Singh NK. 2005b. SSR based detection of genetic variability in the charcoal root rot pathogen Macrophominba phaseolina. Mycol Res 109:81-86.
11. Khan AL, FakirG A, Thirumalchar MJ. 1976. Comparative pathogenicity of two strains of Macrophomina phaseolina from sesame. Bangaladesh Journal of Botany 5:77-81.
12. Kunwar IK, Singh T, Machado CC, Sinclair JB. 1986. Histopathology of soybean seed and seedling infection by Macrophomina phaseolina. Phytopathology 76:532-535.
13. Lee SB, White TJ, Taylor JW. 1993. Detection of Phytophthora species of oligonucleotide hybridization to amplified ribosomal DNA spacers. Phytopathology 83:177-181.
14. Lee SW, Taylor JW. 1992. Isolation of DNA from fungal mycelia and single spores. In: Innis MA, Gelland DH, Sninsky JJ, White TJ, eds. PCR protocols: A guide to Methods and Applications. San Diego: Academic Press. p 282-287.
15. Lovic BR, Martyn RD, Miller ME. 1995. Sequence analysis of the ITS regions of rDNA in Monosporascus spp. reveals its potential for PCR-mediated detection. Phytopathology 85:655-661.
16. Mihail JD, Taylor SJ. 1995. Interpreting variability among isolates for Macrophomina phaseolina in pathogenicity, pycnidium production and chlorate utilization. Canadian Journal of Botany 10:1596-1603.
17. Nazar RN, Hu X, Schmidt J, Culham D, Robb J. 1991. Potential use of PCR-amplified ribosomal intergenic sequences in the detection and differentiation of Verticillium wilt pathogens. Physiological and Molecular Plant Pathology 39:1-11.
18. Pearson CAS, Leslie JE, Schweak EW. 1987a. Host preference co-related with chlorate resistance in Macrophomina phaseolina. Plant Disease 71:828-831.
19. Purkayastha S, Kaur B, Dilbaghi N, Chaudhary A. 2006. Characterization of Macrophomina phaseolina, the charcoal rot pathogen of cluster bean, using conventional techniques and PCR-based molecular markers. Plant Pathology 55:106-116.
20. Schmidt O, Moreth U. 1999. Identification of dry rot fungus, Serpula lacrymans and the wild Merulius, S. himantiodes, by amplified ribosomal restriction analysis (ARDRA). Holzforchung 53:123-128.
21. Sookyung Oh, Pascal Kamdem D, Daniel E Keathley, Kyung-Hwan Han. 2003. Detection and species identification of wood-decaying fungi by hybridization of immobilized sequence-specific oligonucleotide probes with PCR-amplified fungal ribosomal DNA internal transcribed spacers. Holzforschung 45:346-356.
22. Srivastava AK, Singh RB. 1990. Effect of organic amendment on interaction of Macrophomina phaseolina and Melpidogyne incognita on fresh bean (Phaseolus vulgaris). New Agriculturist 1:99-100.
23. Su G, Suh S O, Schneider RW, Rusin JS. 2001. Host specialization in the charcoal rot fungus, Macrophomina phaseolina. Phytopathology 92:120-126.
24. Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22:4673-4680.
25. White TM, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal DNA for phylogenetics. In: Inns MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: A guide to methods and applications. San Diego, California: Academic press. p 315-321.