Apolipoprotein E phylogeny and evolution

Cell Biochemistry and Function

Volumn 26, Issue 1, 2008, Pages 43-50

  Kasap, Murat ^a   Sazci, Ali ^a   Akpinar, Gurler ^a   Ergul, Emel ^a  

^a KOCAELI UNIVERSITY   (Turkey)

Author keywords

Apolipoprotein E; Diet; Evolution; Phylogeny

Indexed keywords

APOLIPOPROTEIN E;

AMINO ACID SEQUENCE; ARTICLE; DATA ANALYSIS; DIETARY INTAKE; EVOLUTION; FEEDING BEHAVIOR; FISH; FROG; GENE SEQUENCE; LIPID TRANSPORT; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL;

AMINO ACID SEQUENCE; ANIMALS; APOLIPOPROTEINS E; BASE SEQUENCE; CATTLE; CHOLESTEROL; CONSERVED SEQUENCE; EVOLUTION, MOLECULAR; HUMANS; HYLOBATES; MICE; PAN TROGLODYTES; PHYLOGENY; PONGO PYGMAEUS; RATS;

ANURA;

EID: 38849111381     PISSN: 02636484     EISSN: 10990844     Source Type: Journal    
DOI: 10.1002/cbf.1396     Document Type: Article

References (32)

1. Bolanos-Garcia VM, Miguel RN. On the structure and function of apolipoproteins: more than a family of lipid-binding proteins. Prog Biophys Mol Biol 2003; 83: 47-68.
2. Brown W. Structure and metabolism of plasma lipoproteins - an overview. Nutr Metab 1980; 1: 1-2.
3. Mahley RW. Apolipoprotein E: cholesterol transport protein with expanding role in cell biology. Science 1988; 240: 622-630.
4. Sporis D, Sertic J, Henigsberg N, Mahovic D, Bogdanovic N, Babic T. Association of refractory complex partial seizures with a polymorphism of Apo E genotype. J Cell Mol Med 2005; 9: 698-703.
5. Ahmad U, Mahmood MS, Siddiqui S, Frossard PM. Effects of apolipoprotein E polymorphism on the development of stroke. J Pak Med Assoc 2004; 54: 626-632.
6. Carbo RM, Scacchi R. Apolipoprotein E (Apo E) allele distribution in the world. Is APO E 4 a thrifty allele? Ann Hum Genet 1999; 63: 301-310.
7. Ghiselli G, Schaefer EJ, Gascon P, Breser HB, Jr. Type III hyperlipoproteinemia associated with apolipoprotein E deficiency. Science 1981; 214: 1239-1241.
8. Gofman JW, Delalla O, Glazier F, et al. The serum lipoprotein transport system in health, metabolic disorders, atherosclerosis, and coronary heart disease. Plasma 1954; 2: 413-484.
9. Lannfelt L, Pedersen NL, Lilius L, et al. Apolipoprotein epsilon-4 allele in Swedish twins and siblings with Alzheimer disease. Proc Natl Acad Sci USA 1997; 94: 11992-11997.
10. Paik YK, Chang DJ, Reardon CA, Davies GE, Mahley RW, Taylor JM. Nucleotide sequence and structure of the human apolipoprotein E gene. Proc Nat Acad Sci 1985; 82: 3445-3449.
11. Wilson C, Wardell MR, Weisgraber KH, Mahley RW, Agard DA. Three-dimensional structure of the LDL receptor-binding domain of human apolipoprotein E. Science 1991; 252: 1817-1822.
12. Segelke BW, Forstner M, Knapp M, et al. Conformational flexibility in the apolipoprotein E amino-terminal domain structure determined from three new crystal forms: implications for lipid building. Protein Sci 2000; 9: 886-897.
13. Forstner M, Peters-Libeu C, Contreras-Forrest E, et al. Carboxyl-terminal domain of human apolipoprotein E: expression, purification, and crystallization. Protein Expr Purif 1999; 17: 267-272.
14. Fan D, Li Q, Korando L, Jerome WG, Wang J. A monomeric human apolipoprotein E carboxyl-terminal domain. Biochemistry 2004; 43: 5055-5064.
15. Barker WC, Dayhoff MO. Evolution of lipoproteins deduced from protein sequence data. Comp Biochem Physiol B 1977; 57: 309-315.
16. Li WH, Tanimura M, Luo CC, Datta S, Chan L. The apolipoprotein multigene family: biosynthesis, structure, structure-function relationships, and evolution. J lipid Res 1988; 29: 245-271.
17. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL
18. Galtier N, Gouy M, Gautier C. Sea View and Phylo_win, two graphic tools for sequence alignment and molecular phylogeny. Comput Applic Biosci 1996; 12: 543-548.
19. Swoofford DL, Olsen GJ, Waddell PJ, Hillis DM. Phylogenetic inference. In Molecular Systematics (2nd edn), Hillis DM, Moritz C, Mable BK (eds). Sinaeur Associates: Sunderland, MA, 1996; 407-514.
20. Felsenstein J. PHYLIP. Phylogenetic inference package, Version 3.5c. Seattle: Department of genetics, University of Washington. 1993.
21. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4: 406-425.
22. Salemi M, Vandamme AM. The Phylogenetic Handbook, Cambridge Press: Cambridge, UK, 2003.
23. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985; 39: 783-791.
24. Landau M, Mayrose I, Rosenberg Y, et al. The projection of evolutionary conservation scores of residues on protein structures. Nucleic Acids Res 2005; 33: 299-302.
25. DeLano WL. The PyMOL Molecular Graphics System (2002) DeLano Scientific San Carlos, CA, USA. 2002.
26. Matsushima T, Getz GS, Meredith SC. Primary structure of guinea pig apolipoprotein E. Nucleic Acids Res 1990; 18: 202.
27. Komatsu Y, Horiuchi M, Ishiguro N, Matsui T, Shinagawa M. Characterization of the sheep apolipoprotein E (Apo E) gene and allelic variations of the Apo E gene in scrapie Suffolk sheep. Gene 1998; 208: 131-138.
28. Eck RV, Dayhoff MO. Evolution of the structure of ferredoxin based on living relics of primitive amino acid sequences. Science 1966; 152: 363-366.
29. Fitch WM. Towards defining the course of evolution: minimum change for a specific tree topology. Syst Zool 1971; 20: 406-416.
30. Ajees AA, Anantharamaiah GM, Mishra VK, Hussain MM, Murthy HM. Crystal structure of human apolipoprotein A-I: insights into its protective effect against cardiovascular disease. PNAS 2006; 103: 2126-2131.
31. Wang L, Chai J, Lu Y, Tan CC. Studies on the molecular evolution of apolipoprotein multigene family. Yi Chuan Xue Bao 1994; 21: 81-95.
32. Lawn RM, Schwartz K, Patthy L. Convergent evolution of apolipoprotein(a) in primates and hedgehog. Proc Natl Acad Sci USA 1997; 94: 11992-11997.