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Volumn 112, Issue 2, 2008, Pages 250-256

Ligand-to-metal charge-transfer dynamics in a blue copper protein plastocyanin: A molecular dynamics study

Author keywords

[No Author keywords available]

Indexed keywords

CHARGE TRANSFER; DENSITY FUNCTIONAL THEORY; ELECTRONIC STATES; EXCITED STATES; GROUND STATE; MOLECULAR DYNAMICS;

EID: 38849099761     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp074822v     Document Type: Article
Times cited : (23)

References (58)
  • 22
    • 84906382298 scopus 로고    scopus 로고
    • We are thus inclined to call it a ligand-bond-to-metal charge-transfer LBMCT, but in this paper, we follow the convention to call it a LMCT
    • We are thus inclined to call it a ligand-bond-to-metal charge-transfer (LBMCT), but in this paper, we follow the convention to call it a LMCT.
  • 31
    • 84906367605 scopus 로고    scopus 로고
    • The spectra were calculated by the fast Fourier transformation and were averaged over 194 overlapping segments of the 800 ps trajectory. Then, a triangular filter function, which averages five points around a central point with a triangular weight, was applied to smooth the spectra. The Welch window was applied prior to the fast Fourier transformation. For the coherence spectra in Figure 6, the Parzen window and a nine points filter were used instead.
    • The spectra were calculated by the fast Fourier transformation and were averaged over 194 overlapping segments of the 800 ps trajectory. Then, a triangular filter function, which averages five points around a central point with a triangular weight, was applied to smooth the spectra. The Welch window was applied prior to the fast Fourier transformation. For the coherence spectra in Figure 6, the Parzen window and a nine points filter were used instead.
  • 33
    • 84906396352 scopus 로고    scopus 로고
    • The 800 ps trajectory was divided into 800 segments of 1 ps length, from which configurations were randomly sampled in every two segments
    • The 800 ps trajectory was divided into 800 segments of 1 ps length, from which configurations were randomly sampled in every two segments.
  • 38
    • 84906382299 scopus 로고    scopus 로고
    • The Fourier transforms of the TCFs are computed in practice from the power spectra of trajectories via the Wiener-Khinchin theorem
    • The Fourier transforms of the TCFs are computed in practice from the power spectra of trajectories via the Wiener-Khinchin theorem.
  • 39
    • 84906396353 scopus 로고    scopus 로고
    • 0.
    • 0.
  • 40
    • 0004220252 scopus 로고
    • in Japanese, Asakura: Tokyo
    • Hino, M. Spectral Analysis (in Japanese); Asakura: Tokyo, 1977.
    • (1977) Spectral Analysis
    • Hino, M.1
  • 42
    • 84906410785 scopus 로고    scopus 로고
    • -5 rad for all of the data.
    • -5 rad for all of the data.
  • 43
    • 84906382294 scopus 로고    scopus 로고
    • neq were evaluated from averages in the 3.6-4.0 ps region where the relaxations were observed to have converged.
    • neq were evaluated from averages in the 3.6-4.0 ps region where the relaxations were observed to have converged.
  • 58
    • 84906382295 scopus 로고    scopus 로고
    • xy(ω) = (2π/T)X(ω)*Y(ω), in which T is the total length of the time record.
    • xy(ω) = (2π/T)X(ω) *Y(ω), in which T is the total length of the time record.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.