-
1
-
-
0035896024
-
ConSurf: An algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information
-
Armon A., Graur D., and Ben-Tal N. ConSurf: An algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information. J. Mol. Biol. 307 1 (2001) 447-463
-
(2001)
J. Mol. Biol.
, vol.307
, Issue.1
, pp. 447-463
-
-
Armon, A.1
Graur, D.2
Ben-Tal, N.3
-
2
-
-
0023176681
-
Determinants of a protein fold: Unique features of the globin amino acid sequences
-
Bashford D., Chothia C., and Lesk A.M. Determinants of a protein fold: Unique features of the globin amino acid sequences. J. Mol. Biol. 196 1 (1987) 199-216
-
(1987)
J. Mol. Biol.
, vol.196
, Issue.1
, pp. 199-216
-
-
Bashford, D.1
Chothia, C.2
Lesk, A.M.3
-
3
-
-
0026887079
-
A survey of multiple sequence comparison methods
-
Chan S.C., Wong A.K., and Chiu D.K. A survey of multiple sequence comparison methods. Bull. Math Biol. 54 4 (1992) 563-598
-
(1992)
Bull. Math Biol.
, vol.54
, Issue.4
, pp. 563-598
-
-
Chan, S.C.1
Wong, A.K.2
Chiu, D.K.3
-
4
-
-
0028662507
-
Macromolecular bioactivity: Is it resonant interaction between macromolecules? - Theory and applications
-
Cosic I. Macromolecular bioactivity: Is it resonant interaction between macromolecules? - Theory and applications. IEEE Trans. Biomed. Eng. 41 12 (1994) 1101-1114
-
(1994)
IEEE Trans. Biomed. Eng.
, vol.41
, Issue.12
, pp. 1101-1114
-
-
Cosic, I.1
-
5
-
-
84959798530
-
Cases in which parsimony and compatibility methods will be positively misleading
-
Felsenstein J. Cases in which parsimony and compatibility methods will be positively misleading. Syst. Zool. 27 4 (1978) 401-410
-
(1978)
Syst. Zool.
, vol.27
, Issue.4
, pp. 401-410
-
-
Felsenstein, J.1
-
6
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein J. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17 6 (1981) 368-376
-
(1981)
J. Mol. Evol.
, vol.17
, Issue.6
, pp. 368-376
-
-
Felsenstein, J.1
-
7
-
-
2142813788
-
Improved support vector classification using PCA and ICA feature space modification
-
Fortuna J., and Capson D. Improved support vector classification using PCA and ICA feature space modification. Pattern Recognition 37 6 (2004) 1117-1129
-
(2004)
Pattern Recognition
, vol.37
, Issue.6
, pp. 1117-1129
-
-
Fortuna, J.1
Capson, D.2
-
8
-
-
0029091249
-
Average core structures and variability measures for protein families: Application to the immunoglobulins
-
Gerstein M., and Altman R.B. Average core structures and variability measures for protein families: Application to the immunoglobulins. J. Mol. Biol. 251 1 (1995) 161-175
-
(1995)
J. Mol. Biol.
, vol.251
, Issue.1
, pp. 161-175
-
-
Gerstein, M.1
Altman, R.B.2
-
10
-
-
0344551953
-
An invariant scheme for exact match retrieval of symbolic images based upon principal component analysis
-
Guru D.S., and Punitha P. An invariant scheme for exact match retrieval of symbolic images based upon principal component analysis. Pattern Recognition Lett. 25 1 (2004) 73-86
-
(2004)
Pattern Recognition Lett.
, vol.25
, Issue.1
, pp. 73-86
-
-
Guru, D.S.1
Punitha, P.2
-
11
-
-
34250967631
-
Zur theorie der orthogonalen funktionensysteme
-
Haar A. Zur theorie der orthogonalen funktionensysteme. Math. Ann. 69 (1910) 331-371
-
(1910)
Math. Ann.
, vol.69
, pp. 331-371
-
-
Haar, A.1
-
13
-
-
0025612174
-
Resolution of hypervariable regions in T-cell receptor chains by a modified Wu-Kabat Index of amino acid diversity
-
Jores R., Alzari P.M., and Meo T. Resolution of hypervariable regions in T-cell receptor chains by a modified Wu-Kabat Index of amino acid diversity. Proc. Natl. Acad. Sci. USA 87 23 (1990) 9138-9142
-
(1990)
Proc. Natl. Acad. Sci. USA
, vol.87
, Issue.23
, pp. 9138-9142
-
-
Jores, R.1
Alzari, P.M.2
Meo, T.3
-
14
-
-
38749095595
-
-
Kabat, E.A., Wu, T.T., Perry, H., Gottesman, K., Foeller, C., 1991. Sequences of Proteins of Immunological Interest, fourth ed. NIH Publication No. 91-3242.
-
Kabat, E.A., Wu, T.T., Perry, H., Gottesman, K., Foeller, C., 1991. Sequences of Proteins of Immunological Interest, fourth ed. NIH Publication No. 91-3242.
-
-
-
-
15
-
-
0029935769
-
Evolutionary conservation of RecA genes in relation to protein structure and function
-
Karlin S., and Brocchieri L. Evolutionary conservation of RecA genes in relation to protein structure and function. J. Bacteriol. 178 7 (1996) 1881-1894
-
(1996)
J. Bacteriol.
, vol.178
, Issue.7
, pp. 1881-1894
-
-
Karlin, S.1
Brocchieri, L.2
-
16
-
-
0032711731
-
Analysis of Heregulin symmetry by weighted evolutionary tracing
-
Landgraf R., Fischer D., and Eisenberg D. Analysis of Heregulin symmetry by weighted evolutionary tracing. Protein Eng. 12 11 (1999) 943-951
-
(1999)
Protein Eng.
, vol.12
, Issue.11
, pp. 943-951
-
-
Landgraf, R.1
Fischer, D.2
Eisenberg, D.3
-
17
-
-
0030659457
-
PDBsum: A web-based database of summaries and analyses of all PDB structures
-
Laskowski R.A., Hutchinson E.G., Michie A.D., Wallace A.C., Jones M.L., and Thornton J.M. PDBsum: A web-based database of summaries and analyses of all PDB structures. Trends Biochem. Sci. 22 12 (1997) 488-490
-
(1997)
Trends Biochem. Sci.
, vol.22
, Issue.12
, pp. 488-490
-
-
Laskowski, R.A.1
Hutchinson, E.G.2
Michie, A.D.3
Wallace, A.C.4
Jones, M.L.5
Thornton, J.M.6
-
18
-
-
0029913807
-
An evolutionary trace method defines binding surfaces common to protein families
-
Lichtarge O., Bourne H.R., and Cohen F.E. An evolutionary trace method defines binding surfaces common to protein families. J. Mol. Biol. 257 2 (1996) 342-358
-
(1996)
J. Mol. Biol.
, vol.257
, Issue.2
, pp. 342-358
-
-
Lichtarge, O.1
Bourne, H.R.2
Cohen, F.E.3
-
19
-
-
0033536602
-
Evolutionarily conserved pathways of energetic connectivity in protein families
-
Lockless S.W., and Ranganathan R. Evolutionarily conserved pathways of energetic connectivity in protein families. Science 286 (1999) 295-299
-
(1999)
Science
, vol.286
, pp. 295-299
-
-
Lockless, S.W.1
Ranganathan, R.2
-
20
-
-
0345062357
-
Universally conserved positions in protein folds: Reading evolutionary signals about stability, folding kinetics and function
-
Mirny L.A., and Shakhnovich E.I. Universally conserved positions in protein folds: Reading evolutionary signals about stability, folding kinetics and function. J. Mol. Biol. 291 1 (1999) 177-196
-
(1999)
J. Mol. Biol.
, vol.291
, Issue.1
, pp. 177-196
-
-
Mirny, L.A.1
Shakhnovich, E.I.2
-
21
-
-
0042885601
-
-
BIOS Scientific Publishers Ltd., Oxford, UK
-
Orengo C.A., Jones D.T., and Thornton J.M. Bioinformatics: Genes, Proteins and Computers (2003), BIOS Scientific Publishers Ltd., Oxford, UK
-
(2003)
Bioinformatics: Genes, Proteins and Computers
-
-
Orengo, C.A.1
Jones, D.T.2
Thornton, J.M.3
-
22
-
-
0032962457
-
Twilight zone of protein sequence alignments
-
Rost B. Twilight zone of protein sequence alignments. Protein Eng. 12 2 (1999) 85-94
-
(1999)
Protein Eng.
, vol.12
, Issue.2
, pp. 85-94
-
-
Rost, B.1
-
23
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N., and Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 4 (1987) 406-425
-
(1987)
Mol. Biol. Evol.
, vol.4
, Issue.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
24
-
-
0026030641
-
Database of homology-derived protein structures and the structural meaning of sequence alignment
-
Sander C., and Schneider R. Database of homology-derived protein structures and the structural meaning of sequence alignment. Proteins 9 1 (1991) 56-68
-
(1991)
Proteins
, vol.9
, Issue.1
, pp. 56-68
-
-
Sander, C.1
Schneider, R.2
-
25
-
-
84856043672
-
A mathematical theory of communication
-
623-656
-
Shannon C.E. A mathematical theory of communication. Bell System Tech. J. 27 (1948) 379-423 623-656
-
(1948)
Bell System Tech. J.
, vol.27
, pp. 379-423
-
-
Shannon, C.E.1
-
26
-
-
0026342532
-
Information-theoretical entropy as a measure of sequence variability
-
Shenkin P.S., Erman B., and Mastrandrea L.D. Information-theoretical entropy as a measure of sequence variability. Proteins 11 4 (1991) 297-313
-
(1991)
Proteins
, vol.11
, Issue.4
, pp. 297-313
-
-
Shenkin, P.S.1
Erman, B.2
Mastrandrea, L.D.3
-
27
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 22 (1994) 4673-4680
-
(1994)
Nucleic Acids Res.
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
28
-
-
0028013177
-
Improved sensitivity of profile searches through the use of sequence weights and gap excision
-
Thompson J.D., Higgins D.G., and Gibson T.J. Improved sensitivity of profile searches through the use of sequence weights and gap excision. Bioinformatics 10 1 (1994) 19-29
-
(1994)
Bioinformatics
, vol.10
, Issue.1
, pp. 19-29
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
29
-
-
0031574072
-
The CLUSTALX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTALX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 24 (1997) 4876-4882
-
(1997)
Nucleic Acids Res.
, vol.25
, Issue.24
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
30
-
-
0032988850
-
BAliBASE: A benchmark alignment database for the evaluation of multiple alignment programs
-
Thompson J.D., Plewniak F., and Poch O. BAliBASE: A benchmark alignment database for the evaluation of multiple alignment programs. Bioinformatics 15 1 (1999) 87-88
-
(1999)
Bioinformatics
, vol.15
, Issue.1
, pp. 87-88
-
-
Thompson, J.D.1
Plewniak, F.2
Poch, O.3
-
31
-
-
0036681416
-
Scoring residue conservation
-
Valdar W.S. Scoring residue conservation. Proteins 48 2 (2002) 227-241
-
(2002)
Proteins
, vol.48
, Issue.2
, pp. 227-241
-
-
Valdar, W.S.1
-
32
-
-
0029078795
-
Information theory analysis of the relationship between primary sequence structure and ligand recognition among a class of facilitated transporters
-
Williamson R.M. Information theory analysis of the relationship between primary sequence structure and ligand recognition among a class of facilitated transporters. J. Theor. Biol. 174 2 (1995) 179-188
-
(1995)
J. Theor. Biol.
, vol.174
, Issue.2
, pp. 179-188
-
-
Williamson, R.M.1
-
34
-
-
0014828908
-
An analysis of the sequences of the variable regions of Bence Jones proteins and myeloma light chains and their implications for antibody complementarity
-
Wu T.T., and Kabat E.A. An analysis of the sequences of the variable regions of Bence Jones proteins and myeloma light chains and their implications for antibody complementarity. J. Exp. Med. 132 (1970) 211-250
-
(1970)
J. Exp. Med.
, vol.132
, pp. 211-250
-
-
Wu, T.T.1
Kabat, E.A.2
|