-
1
-
-
0030606499
-
Application of N-terminally truncated DNA polymerase from Thermus thermophilus (delta Tth polymerase) to DNA sequencing and polymerase chain reactions: Comparative study of delta Tth and wild-type Tth polymerases
-
Arakawa T, Jongsareejit B, Tatsumi Y, Tanaka K, Ikeda K, Komatsubara H, Inoue H, Kawakami B, Oka M, Emi S, Yomo T, Shima Y, Negoro S, Urabe I (1996) Application of N-terminally truncated DNA polymerase from Thermus thermophilus (delta Tth polymerase) to DNA sequencing and polymerase chain reactions: comparative study of delta Tth and wild-type Tth polymerases. DNA Res 3:87-92
-
(1996)
DNA Res
, vol.3
, pp. 87-92
-
-
Arakawa, T.1
Jongsareejit, B.2
Tatsumi, Y.3
Tanaka, K.4
Ikeda, K.5
Komatsubara, H.6
Inoue, H.7
Kawakami, B.8
Oka, M.9
Emi, S.10
Yomo, T.11
Shima, Y.12
Negoro, S.13
Urabe, I.14
-
2
-
-
0027988814
-
The WW domain: A signalling site in dystrophin?
-
Bork P, Sudol M (1994) The WW domain: a signalling site in dystrophin? Trends Biochem Sci 19:531-533
-
(1994)
Trends Biochem Sci
, vol.19
, pp. 531-533
-
-
Bork, P.1
Sudol, M.2
-
3
-
-
0035912721
-
Exploring the DNA-binding specificities of zinc fingers with DNA microarrays
-
Bulyk ML, Huang X, Choo Y, Church GM (2001) Exploring the DNA-binding specificities of zinc fingers with DNA microarrays. Proc Natl Acad Sci USA 98:7158-7163
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 7158-7163
-
-
Bulyk, M.L.1
Huang, X.2
Choo, Y.3
Church, G.M.4
-
4
-
-
0029099161
-
The WW domain of Yes-associated protein binds a proline-rich ligand that differs from the consensus established for Src homology 3-binding modules
-
Chen HI, Sudol M (1995) The WW domain of Yes-associated protein binds a proline-rich ligand that differs from the consensus established for Src homology 3-binding modules. Proc Natl Acad Sci USA 92:7819-7823
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 7819-7823
-
-
Chen, H.I.1
Sudol, M.2
-
5
-
-
0030858496
-
Characterization of the WW domain of human yes-associated protein and its polyproline-containing ligands
-
Chen HI, Einbond A, Kwak SJ, Linn H, Koepf E, Peterson S, Kelly JW, Sudol M (1997) Characterization of the WW domain of human yes-associated protein and its polyproline-containing ligands. J Biol Chem 272:17070-17077
-
(1997)
J Biol Chem
, vol.272
, pp. 17070-17077
-
-
Chen, H.I.1
Einbond, A.2
Kwak, S.J.3
Linn, H.4
Koepf, E.5
Peterson, S.6
Kelly, J.W.7
Sudol, M.8
-
6
-
-
0020645081
-
Prokaryotic coupled transcription-translation
-
Chen HZ, Zubay G (1983) Prokaryotic coupled transcription-translation. Methods Enzymol 101:674-690
-
(1983)
Methods Enzymol
, vol.101
, pp. 674-690
-
-
Chen, H.Z.1
Zubay, G.2
-
7
-
-
0034493023
-
Evolution of binding affinity in a WW domain probed by phage display
-
Dalby PA, Hoess RH, DeGrado WF (2000) Evolution of binding affinity in a WW domain probed by phage display. Protein Sci 9:2366-2376
-
(2000)
Protein Sci
, vol.9
, pp. 2366-2376
-
-
Dalby, P.A.1
Hoess, R.H.2
Degrado, W.F.3
-
8
-
-
23944490117
-
Missense meanderings in sequence space: A biophysical view of protein evolution
-
DePristo MA, Weinreich DM, Hartl DL (2005) Missense meanderings in sequence space: a biophysical view of protein evolution. Nat Rev Genet 6:678-687
-
(2005)
Nat Rev Genet
, vol.6
, pp. 678-687
-
-
Depristo, M.A.1
Weinreich, D.M.2
Hartl, D.L.3
-
9
-
-
0029379551
-
Let's get specific: The relationship between specificity and affinity
-
Eaton BE, Gold L, Zichi DA (1995) Let's get specific: the relationship between specificity and affinity. Chem Biol 2:633-638
-
(1995)
Chem Biol
, vol.2
, pp. 633-638
-
-
Eaton, B.E.1
Gold, L.2
Zichi, D.A.3
-
10
-
-
3042681604
-
Protein tolerance to random amino acid change
-
Guo HH, Choe J, Loeb LA (2004) Protein tolerance to random amino acid change. Proc Natl Acad Sci USA 101:9205-9210
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 9205-9210
-
-
Guo, H.H.1
Choe, J.2
Loeb, L.A.3
-
11
-
-
0030974119
-
In vitro selection and evolution of functional proteins by using ribosome display
-
Hanes J, Plückthun A (1997) In vitro selection and evolution of functional proteins by using ribosome display. Proc Natl Acad Sci USA 94:4937-4942
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 4937-4942
-
-
Hanes, J.1
Plückthun, A.2
-
12
-
-
0034459679
-
Evolutionary trace analysis of TGF-beta and related growth factors: Implications for site-directed mutagenesis
-
Innis CA, Shi J, Blundell TL (2000) Evolutionary trace analysis of TGF-beta and related growth factors: implications for site-directed mutagenesis. Protein Eng 13:839-847
-
(2000)
Protein Eng
, vol.13
, pp. 839-847
-
-
Innis, C.A.1
Shi, J.2
Blundell, T.L.3
-
13
-
-
0038148710
-
Conformational diversity and protein evolution-a 60-year-old hypothesis revisited
-
James LC, Tawfik DS (2003) Conformational diversity and protein evolution-a 60-year-old hypothesis revisited. Trends Biochem Sci 28:361-368
-
(2003)
Trends Biochem Sci
, vol.28
, pp. 361-368
-
-
James, L.C.1
Tawfik, D.S.2
-
14
-
-
0037470496
-
Antibody multispecificity mediated by conformational diversity
-
James LC, Roversi P, Tawfik DS (2003) Antibody multispecificity mediated by conformational diversity. Science 299:1362-1367
-
(2003)
Science
, vol.299
, pp. 1362-1367
-
-
James, L.C.1
Roversi, P.2
Tawfik, D.S.3
-
15
-
-
0034976980
-
Increasing protein stability using a rational approach combining sequence homology and structural alignment: Stabilizing the WW domain
-
Jiang X, Kowalski J, Kelly JW (2001) Increasing protein stability using a rational approach combining sequence homology and structural alignment: Stabilizing the WW domain. Protein Sci 10:1454-1465
-
(2001)
Protein Sci
, vol.10
, pp. 1454-1465
-
-
Jiang, X.1
Kowalski, J.2
Kelly, J.W.3
-
16
-
-
0031763565
-
Delineation of an evolutionary salvage pathway by compensatory mutations of a defective lysozyme
-
Jucovic M, Poteete AR (1998) Delineation of an evolutionary salvage pathway by compensatory mutations of a defective lysozyme. Protein Sci 7:2200-2209
-
(1998)
Protein Sci
, vol.7
, pp. 2200-2209
-
-
Jucovic, M.1
Poteete, A.R.2
-
17
-
-
0025912824
-
Recent development of the neutral theory viewed from the Wrightian tradition of theoretical population genetics
-
Kimura M (1991) Recent development of the neutral theory viewed from the Wrightian tradition of theoretical population genetics. Proc Natl Acad Sci USA 88:5969-5973
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, pp. 5969-5973
-
-
Kimura, M.1
-
18
-
-
0033607151
-
Characterization of the structure and function of W → F WW domain variants: Identification of a natively unfolded protein that folds upon ligand binding
-
Koepf EK, Petrassi HM, Ratnaswamy G, Huff ME, Sudol M, Kelly JW (1999a) Characterization of the structure and function of W → F WW domain variants: identification of a natively unfolded protein that folds upon ligand binding. Biochemistry 38:14338-14351
-
(1999)
Biochemistry
, vol.38
, pp. 14338-14351
-
-
Koepf, E.K.1
Petrassi, H.M.2
Ratnaswamy, G.3
Huff, M.E.4
Sudol, M.5
Kelly, J.W.6
-
19
-
-
0032939806
-
WW: An isolated three-stranded antiparallel beta-sheet domain that unfolds and refolds reversibly; Evidence for a structured hydrophobic cluster in urea and GdnHCl and a disordered thermal unfolded state
-
Koepf EK, Petrassi HM, Sudol M, Kelly JW (1999b) WW: An isolated three-stranded antiparallel beta-sheet domain that unfolds and refolds reversibly; evidence for a structured hydrophobic cluster in urea and GdnHCl and a disordered thermal unfolded state. Protein Sci 8:841-853
-
(1999)
Protein Sci
, vol.8
, pp. 841-853
-
-
Koepf, E.K.1
Petrassi, H.M.2
Sudol, M.3
Kelly, J.W.4
-
22
-
-
0031282147
-
Correcting the circular dichroism spectra of peptides for contributions of absorbing side chains
-
Krittanai C, Johnson WC (1997) Correcting the circular dichroism spectra of peptides for contributions of absorbing side chains. Anal Biochem 253:57-64
-
(1997)
Anal Biochem
, vol.253
, pp. 57-64
-
-
Krittanai, C.1
Johnson, W.C.2
-
23
-
-
0029775570
-
Structure of the WW domain of a kinase-associated protein complexed with a proline-rich peptide
-
Macias MJ, Hyvonen M, Baraldi E, Schultz J, Sudol M, Saraste M, Oschkinat H (1996) Structure of the WW domain of a kinase-associated protein complexed with a proline-rich peptide. Nature 382:646-649
-
(1996)
Nature
, vol.382
, pp. 646-649
-
-
MacIas, M.J.1
Hyvonen, M.2
Baraldi, E.3
Schultz, J.4
Sudol, M.5
Saraste, M.6
Oschkinat, H.7
-
24
-
-
0037468662
-
Selection based on the folding properties of proteins with ribosome display
-
Matsuura T, Plückthun A (2003) Selection based on the folding properties of proteins with ribosome display. FEBS Lett 539:24-28
-
(2003)
FEBS Lett
, vol.539
, pp. 24-28
-
-
Matsuura, T.1
Plückthun, A.2
-
25
-
-
33751534796
-
Nascent chain, mRNA, and ribosome complexes generated by a pure translation system
-
Matsuura T, Yanagida H, Ushioda J, Urabe I, Yomo T (2007) Nascent chain, mRNA, and ribosome complexes generated by a pure translation system. Biochem Biophys Res Commun 352:372-377
-
(2007)
Biochem Biophys Res Commun
, vol.352
, pp. 372-377
-
-
Matsuura, T.1
Yanagida, H.2
Ushioda, J.3
Urabe, I.4
Yomo, T.5
-
26
-
-
0030039913
-
Competition BIAcore for measuring true affinities: Large differences from values determined from binding kinetics
-
Nieba L, Krebber A, Plückthun A (1996) Competition BIAcore for measuring true affinities: large differences from values determined from binding kinetics. Anal Biochem 234:155-165
-
(1996)
Anal Biochem
, vol.234
, pp. 155-165
-
-
Nieba, L.1
Krebber, A.2
Plückthun, A.3
-
27
-
-
0034141471
-
Mechanism of rescue of common p53 cancer mutations by second-site suppressor mutations
-
Nikolova PV, Wong KB, DeDecker B, Henckel J, Fersht AR (2000) Mechanism of rescue of common p53 cancer mutations by second-site suppressor mutations. EMBO J 19:370-378
-
(2000)
EMBO J
, vol.19
, pp. 370-378
-
-
Nikolova, P.V.1
Wong, K.B.2
Dedecker, B.3
Henckel, J.4
Fersht, A.R.5
-
28
-
-
0030671578
-
Alteration of T4 lysozyme structure by second-site reversion of deleterious mutations
-
Poteete AR, Rennell D, Bouvier SE, Hardy LW (1997) Alteration of T4 lysozyme structure by second-site reversion of deleterious mutations. Protein Sci 6:2418-2425
-
(1997)
Protein Sci
, vol.6
, pp. 2418-2425
-
-
Poteete, A.R.1
Rennell, D.2
Bouvier, S.E.3
Hardy, L.W.4
-
29
-
-
0033613817
-
Evolutionary trace analysis of the Kunitz/BPTI family of proteins: Functional divergence may have been based on conformational adjustment
-
Pritchard L, Dufton MJ (1999) Evolutionary trace analysis of the Kunitz/BPTI family of proteins: functional divergence may have been based on conformational adjustment. J Mol Biol 285:1589-1607
-
(1999)
J Mol Biol
, vol.285
, pp. 1589-1607
-
-
Pritchard, L.1
Dufton, M.J.2
-
30
-
-
33646785070
-
Probing the ligand-binding specificity and analyzing the folding state of SPOT-synthesized FBP28 WW domain variants
-
Przezdziak J, Tremmel S, Kretzschmar I, Beyermann M, Bienert M, Volkmer-Engert R (2006) Probing the ligand-binding specificity and analyzing the folding state of SPOT-synthesized FBP28 WW domain variants. Chembiochem 7:780-788
-
(2006)
Chembiochem
, vol.7
, pp. 780-788
-
-
Przezdziak, J.1
Tremmel, S.2
Kretzschmar, I.3
Beyermann, M.4
Bienert, M.5
Volkmer-Engert, R.6
-
31
-
-
0031733866
-
Stabilizing the subtilisin BPN' pro-domain by phage display selection: How restrictive is the amino acid code for maximum protein stability?
-
Ruan B, Hoskins J, Wang L, Bryan PN (1998) Stabilizing the subtilisin BPN' pro-domain by phage display selection: How restrictive is the amino acid code for maximum protein stability? Protein Sci 7:2345-2353
-
(1998)
Protein Sci
, vol.7
, pp. 2345-2353
-
-
Ruan, B.1
Hoskins, J.2
Wang, L.3
Bryan, P.N.4
-
32
-
-
0032568655
-
SMART, a simple modular architecture research tool: Identification of signaling domains
-
Schultz J, Milpetz F, Bork P, Ponting CP (1998) SMART, a simple modular architecture research tool: identification of signaling domains. Proc Natl Acad Sci USA 95:5857-58
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 5857-58
-
-
Schultz, J.1
Milpetz, F.2
Bork, P.3
Ponting, C.P.4
-
33
-
-
0034904102
-
Cell-free translation reconstituted with purified components
-
Shimizu Y, Inoue A, Tomari Y, Suzuki T, Yokogawa T, Nishikawa K, Ueda T (2001) Cell-free translation reconstituted with purified components. Nat Biotechnol 19:751-755
-
(2001)
Nat Biotechnol
, vol.19
, pp. 751-755
-
-
Shimizu, Y.1
Inoue, A.2
Tomari, Y.3
Suzuki, T.4
Yokogawa, T.5
Nishikawa, K.6
Ueda, T.7
-
34
-
-
0021968408
-
Genetic analysis of staphylococcal nuclease: Identification of three intragenic "global" suppressors of nuclease-minus mutations
-
Shortle D, Lin B (1985) Genetic analysis of staphylococcal nuclease: identification of three intragenic "global" suppressors of nuclease-minus mutations. Genetics 110:539-555
-
(1985)
Genetics
, vol.110
, pp. 539-555
-
-
Shortle, D.1
Lin, B.2
-
35
-
-
0035126520
-
Prediction and confirmation of a site critical for effector regulation of RGS domain activity
-
Sowa ME, He W, Slep KC, Kercher MA, Lichtarge O, Wensel TG (2001) Prediction and confirmation of a site critical for effector regulation of RGS domain activity. Nat Struct Biol 8:234-237
-
(2001)
Nat Struct Biol
, vol.8
, pp. 234-237
-
-
Sowa, M.E.1
He, W.2
Slep, K.C.3
Kercher, M.A.4
Lichtarge, O.5
Wensel, T.G.6
-
36
-
-
0030985412
-
Structural mimicry of a native protein by a minimized binding domain
-
Starovasnik MA, Braisted AC, Wells JA (1997) Structural mimicry of a native protein by a minimized binding domain. Proc Natl Acad Sci USA 94:10080-10085
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 10080-10085
-
-
Starovasnik, M.A.1
Braisted, A.C.2
Wells, J.A.3
-
37
-
-
0032541641
-
From Src Homology domains to other signaling modules: Proposal of the 'protein recognition code.'
-
Sudol M (1998) From Src Homology domains to other signaling modules: proposal of the 'protein recognition code.' Oncogene 17:1469-1474
-
(1998)
Oncogene
, vol.17
, pp. 1469-1474
-
-
Sudol, M.1
-
38
-
-
23944514504
-
Structural disorder throws new light on moonlighting
-
Tompa P, Szasz C, Buday L (2005) Structural disorder throws new light on moonlighting. Trends Biochem Sci 30:484-489
-
(2005)
Trends Biochem Sci
, vol.30
, pp. 484-489
-
-
Tompa, P.1
Szasz, C.2
Buday, L.3
-
39
-
-
0025082684
-
Additivity of mutational effects in proteins
-
Wells JA (1990) Additivity of mutational effects in proteins. Biochemistry 29:8509-8517
-
(1990)
Biochemistry
, vol.29
, pp. 8509-8517
-
-
Wells, J.A.1
-
40
-
-
0028102759
-
Contributions of tryptophan side chains to the far-ultraviolet circular dichroism of proteins
-
Woody RW (1994) Contributions of tryptophan side chains to the far-ultraviolet circular dichroism of proteins. Eur Biophys J 23:253-262
-
(1994)
Eur Biophys J
, vol.23
, pp. 253-262
-
-
Woody, R.W.1
|