Persistence of duplicated PAC1receptors in the teleost, Sparus auratus

BMC Evolutionary Biology

Volumn 7, Issue 1, 2007, Pages

  Cardoso, João C R ^a   De Vet, Edwin C J M ^b   Louro, Bruno ^a   Elgar, Greg ^c   Clark, Melody S ^d   Power, Deborah M ^a  

^a UNIVERSITY OF ALGARVE   (Portugal)

^b BABRAHAM INSTITUTE   (United Kingdom)

^c QUEEN MARY UNIVERSITY OF LONDON   (United Kingdom)

^d BRITISH ANTARCTIC SURVEY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CYCLIC AMP; HYPOPHYSIS ADENYLATE CYCLASE ACTIVATING POLYPEPTIDE; HYPOPHYSIS ADENYLATE CYCLASE ACTIVATING POLYPEPTIDE 27; HYPOPHYSIS ADENYLATE CYCLASE ACTIVATING POLYPEPTIDE RECEPTOR 1; SECRETIN; VASOACTIVE INTESTINAL POLYPEPTIDE; COMPLEMENTARY DNA; MICROSATELLITE DNA;

AMINO ACID SEQUENCE; ANIMAL CELL; ARTICLE; BIOLOGICAL TRAIT; CONTROLLED STUDY; GENE DUPLICATION; GENETIC ANALYSIS; GENOME; HUMAN; HUMAN CELL; NONHUMAN; NUCLEOTIDE SEQUENCE; PARALOGY; PROTEIN PROTEIN INTERACTION; RNA SPLICING; SEQUENCE HOMOLOGY; TELEOST; ANIMAL; BIOSYNTHESIS; CELL STRAIN COS1; CERCOPITHECUS; DUPLICATE GENE; GENE LIBRARY; GENETIC LINKAGE; GENETIC TRANSFECTION; GENETICS; MOLECULAR GENETICS; PHYLOGENY; RADIOIMMUNOASSAY; SEA BREAM; SEQUENCE ALIGNMENT; TISSUE DISTRIBUTION; WESTERN BLOTTING;

ARCHOSARGUS RHOMBOIDALIS; MAMMALIA; SPARUS AURATA; TELEOSTEI; VERTEBRATA;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; BLOTTING, WESTERN; CERCOPITHECUS AETHIOPS; COS CELLS; CYCLIC AMP; DNA, COMPLEMENTARY; GENE LIBRARY; GENES, DUPLICATE; LINKAGE (GENETICS); MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RADIOIMMUNOASSAY; RECEPTORS, PITUITARY ADENYLATE CYCLASE-ACTIVATING POLYPEPTIDE, TYPE I; SEA BREAM; SEQUENCE ALIGNMENT; TISSUE DISTRIBUTION; TRANSFECTION;

EID: 38649114984     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-7-221     Document Type: Article

References (69)

1. Evolution by gene duplication. S Ohno, Berlin, New York, Springer-Verlag 1970
2. Evolution of gene families and relationship with organismal evolution: rapid divergence of tissue-specific genes in the early evolution of chordates. N Iwabe K Kuma T Miyata, Mol Biol Evol 1996 13 3 483 493 8742637
3. Genome evolution and the evolution of exon-shuffling - a review. L Patthy, Gene 1999 238 1 103 114 10.1016/S0378-1119(99)00228-0 10570989
4. Selection in the evolution of gene duplications. FA Kondrashov IB Rogozin YI Wolf EV Koonin, Genome Biol 2002 3 2 RESEARCH0008 11864370 10.1186/gb-2002-3-2-research0008
5. Turning the clock back on ancient genome duplication. C Seoighe, Curr Opin Genet Dev 2003 13 6 636 643 10.1016/j.gde.2003.10.005 14638327
6. Loss of duplicate gene expression after polyploidisation. SD Ferris GS Whitt, Nature 1977 265 5591 258 260 10.1038/265258a0 834271
7. Gene duplications and the origins of vertebrate development. PW Holland J Garcia-Fernandez NA Williams A Sidow, Dev Suppl 1994 125 133 7579513
8. Gene duplication: past, present and future. PW Holland, Semin Cell Dev Biol 1999 10 5 541 547 10.1006/scdb.1999.0335 10597638
9. Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. O Jaillon JM Aury F Brunet JL Petit N Stange-Thomann E Mauceli L Bouneau C Fischer C Ozouf-Costaz A Bernot S Nicaud D Jaffe S Fisher G Lutfalla C Dossat B Segurens C Dasilva M Salanoubat M Levy N Boudet S Castellano V Anthouard C Jubin V Castelli M Katinka B Vacherie C Biemont Z Skalli L Cattolico J Poulain V De Berardinis C Cruaud S Duprat P Brottier JP Coutanceau J Gouzy G Parra G Lardier C Chapple KJ McKernan P McEwan S Bosak M Kellis JN Volff R Guigo MC Zody J Mesirov K Lindblad-Toh B Birren C Nusbaum D Kahn M Robinson-Rechavi V Laudet V Schachter F Quetier W Saurin C Scarpelli P Wincker ES Lander J Weissenbach H Roest Crollius, Nature 2004 431 7011 946 957 10.1038/nature03025 15496914
10. Preservation of duplicate genes by complementary, degenerative mutations. A Force M Lynch FB Pickett A Amores YL Yan J Postlethwait, Genetics 1999 151 4 1531 1545 10101175
11. Expansion of genome coding regions by acquisition of new genes. E Betran M Long, Genetica 2002 115 1 65 80 10.1023/A:1016024131097 12188049
12. Developmental roles of pufferfish Hox clusters and genome evolution in ray-fin fish. A Amores T Suzuki YL Yan J Pomeroy A Singer C Amemiya JH Postlethwait, Genome Res 2004 14 1 1 10 14707165 10.1101/gr.1717804
13. Adaptive evolution after gene duplication. AL Hughes, Trends Genet 2002 18 9 433 434 10.1016/S0168-9525(02)02755-5 12175796
14. Evolution of secretin family GPCR members in the metazoa. JC Cardoso VC Pinto FA Vieira MS Clark DM Power, BMC Evol Biol 2006 6 108 17166275 10.1186/1471-2148-6-108
15. Duplicated receptors for VIP and PACAP (VPAC1R and PAC1R) in a teleost fish, Fugu rubripes. JC Cardoso DM Power G Elgar MS Clark, J Mol Endocrinol 2004 33 2 411 428 10.1677/jme.1.01575 15525598
16. The secretin G-protein-coupled receptor family: teleost receptors. JC Cardoso MS Clark FA Viera PD Bridge A Gilles DM Power, J Mol Endocrinol 2005 34 3 753 765 10.1677/jme.1.01730 15956345
17. The origin and function of the pituitary adenylate cyclase-activating polypeptide (PACAP)/glucagon superfamily. NM Sherwood SL Krueckl JE McRory, Endocr Rev 2000 21 6 619 670 10.1210/er.21.6.619 11133067
18. Pituitary adenylate cyclase-activating polypeptide and its receptors: from structure to functions. D Vaudry BJ Gonzalez M Basille L Yon A Fournier H Vaudry, Pharmacol Rev 2000 52 2 269 324 10835102
19. Structural motifs of pituitary adenylate cyclase-activating polypeptide (PACAP) defining PAC1-receptor selectivity. H Schafer J Zheng C Morys-Wortmann UR Folsch WE Schmidt, Regul Pept 1999 79 2-3 83 92 10.1016/S0167-0115(98)00147-5 10100920
20. VPAC receptors for VIP and PACAP. M Laburthe A Couvineau JC Marie, Receptors Channels 2002 8 3-4 137 153 10.1080/10606820213680 12529932
21. Identification of cytoplasmic domains of hVPAC1 receptor required for activation of adenylyl cyclase. Crucial role of two charged amino acids strictly conserved in class II G protein-coupled receptors. A Couvineau JJ Lacapere YV Tan C Rouyer-Fessard P Nicole M Laburthe, J Biol Chem 2003 278 27 24759 24766 10.1074/jbc.M301916200 12690118
22. A systematic comparison of intracellular cyclic AMP and calcium signalling highlights complexities in human VPAC/PAC receptor pharmacology. L Dickson I Aramori J McCulloch J Sharkey K Finlayson, Neuropharmacology 2006 51 6 1086 1098 10.1016/j.neuropharm.2006.07.017 16930633
23. Differential signal transduction by five splice variants of the PACAP receptor. D Spengler C Waeber C Pantaloni F Holsboer J Bockaert PH Seeburg L Journot, Nature 1993 365 6442 170 175 10.1038/365170a0 8396727
24. The PACAP receptor: generation by alternative splicing of functional diversity among G protein-coupled receptors in nerve cells. L Journot D Spengler C Pantaloni A Dumuis M Sebben J Bockaert, Semin Cell Biol 1994 5 4 263 272 10.1006/scel.1994.1032 7994010
25. Identification and characterization of five-transmembrane isoforms of human vasoactive intestinal peptide and pituitary adenylate cyclase-activating polypeptide receptors. PB Bokaei XZ Ma B Byczynski J Keller D Sakac S Fahim DR Branch, Genomics 2006 88 6 791 800 10.1016/j.ygeno.2006.07.008 16934434
26. Cloning and characterization of a PAC1 receptor hop-1 splice variant in goldfish (Carassius auratus). YY Kwok JY Chu H Vaudry L Yon Y Anouar BK Chow, Gen Comp Endocrinol 2006 145 2 188 196 10.1016/j.ygcen.2005.08.011 16225877
27. Novel splice variants of type I pituitary adenylate cyclase-activating polypeptide receptor in frog exhibit altered adenylate cyclase stimulation and differential relative abundance. D Alexandre H Vaudry L Grumolato V Turquier A Fournier S Jegou Y Anouar, Endocrinology 2002 143 7 2680 2692 10.1210/en.143.7.2680 12072402
28. Characterization of four receptor cDNAs: PAC1, VPAC1, a novel PAC1 and a partial GHRH in zebrafish. EA Fradinger JA Tello JE Rivier NM Sherwood, Mol Cell Endocrinol 2005 231 1-2 49 63 10.1016/j.mce.2004.12.002 15713535
29. Evolution and diversity of fish genomes. B Venkatesh, Curr Opin Genet Dev 2003 13 6 588 592 10.1016/j.gde.2003.09.001 14638319
30. A gene-based radiation hybrid map of the gilthead sea bream Sparus aurata refines and exploits conserved synteny with Tetraodon nigroviridis. E Sarropoulou R Franch B Louro DM Power L Bargelloni A Magoulas F Senger M Tsalavouta T Patarnello F Galibert G Kotoulas R Geisler, BMC Genomics 2007 8 44 17286862 10.1186/1471-2164-8-44
31. Molecular evolution of vertebrate VIP receptors and functional characterization of a VIP receptor from goldfish Carassius auratus. BK Chow TT Yuen KW Chan, Gen Comp Endocrinol 1997 105 2 176 185 10.1006/gcen.1996.6818 9038250
32. Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes. A Christoffels EG Koh JM Chia S Brenner S Aparicio B Venkatesh, Mol Biol Evol 2004 21 6 1146 1151 10.1093/molbev/msh114 15014147
33. Genome duplication, a trait shared by 22,000 species of ray-finned fish. JS Taylor I Braasch T Frickey A Meyer Y Van De Peer, Genome Res 2003 13 382 390 12618368 10.1101/gr.640303
34. HEK293 Cell Database. http://www.mbi.ufl.edu/∼shaw/293.html
35. Comparative genomics provides evidence for an ancient genome duplication event in fish. JS Taylor Y Van de Peer I Braasch A Meyer, Philos Trans R Soc Lond B Biol Sci 2001 356 1661 1679 11604130 10.1098/rstb.2001.0975
36. More genes in fish? J Wittbrodt A Meyer M Schartl, BioEssays 1998 20 511 515 10.1002/(SICI)1521-1878(199806)20:6<511::AID-BIES10>3.0.CO;2-3
37. From 2R to 3R: evidence for a fish-specific genome duplication (FSGD). A Meyer Y Van de Peer, Bioessays 2005 27 9 937 945 10.1002/bies.20293 16108068
38. Discovery of growth hormone-releasing hormones and receptors in nonmammalian vertebrates. LT Lee FK Siu JK Tam IT Lau AO Wong MC Lin H Vaudry BK Chow, Proc Natl Acad Sci U S A 2007 104 7 2133 2138 17283332 10.1073/pnas.0611008104
39. Identification of the endogenous ligands for chicken growth hormone-releasing hormone (GHRH) receptor: evidence for a separate gene encoding GHRH in submammalian vertebrates. Y Wang J Li CY Ying Wang AJ Ho Yan Kwok FC Leung, Endocrinology 2007 148 5 2405 2416 10.1210/en.2006-1013 17272401
40. Fugu Genome database. http://fugu.biology.qmul.ac.uk
41. Ensembl database. http://www.ensembl.org
42. Cloning, regulation of messenger ribonucleic acid expression, and function of a new isoform of pituitary adenylate cyclase-activating polypeptide in the zebrafish ovary. Y Wang AO Wong W Ge, Endocrinology 2003 144 11 4799 4810 10.1210/en.2003-0501 12959988
43. PACAP, VIP and their receptors in the metazoa: insights about the origin and evolution of the ligand-receptor pair. J Cardoso FA Vieira A Gomes D Power, Peptides 2007 17826180
44. Structure of the gene encoding the mouse pituitary adenylate cyclase-activating polypeptide receptor. H Aino H Hashimoto N Ogawa A Nishino K Yamamoto H Nogi S Nagata A Baba, Gene 1995 164 2 301 304 10.1016/0378-1119(95) 00391-I 7590347
45. Cloning and functional characterization of the human VIP1/PACAP receptor promoter. A Couvineau JJ Maoret C Rouyer-Fessard I Carrero M Laburthe, Ann N Y Acad Sci 1998 865 59 63 10.1111/j.1749-6632.1998.tb11163.x 9927997
46. Hypophysiotropic action of pituitary adenylate cyclase-activating polypeptide (PACAP) in the goldfish: immunohistochemical demonstration of PACAP in the pituitary, PACAP stimulation of growth hormone release from pituitary cells, and molecular cloning of pituitary type I PACAP receptor. AO Wong MY Leung WL Shea LY Tse JP Chang BK Chow, Endocrinology 1998 139 8 3465 3479 10.1210/en.139.8.3465 9681497
47. Associations between single nucleotide polymorphisms in candidate genes and growth rate in Arctic charr (Salvelinus alpinus L.). WJ Tao EG Boulding, Heredity 2003 91 1 60 69 10.1038/sj.hdy.6800281 12815454
48. Gastroenteropancreatic hormones and metabolism in fish. LE Nelson MA Sheridan, Gen Comp Endocrinol 2006 148 2 116 124 10.1016/j.ygcen.2006.01.011 16516213
49. Immunohistochemical study on distribution of endocrine cells in gastrointestinal tract of flower fish (Pseudophoxinus antalyae). K Cinar N Senol MR Ozen, World J Gastroenterol 2006 12 42 6874 6878 17106940
50. Evolution of alternative splicing after gene duplication. Z Su J Wang J Yu X Huang X Gu, Genome Res 2006 16 2 182 189 16365379 10.1101/gr.4197006
51. Pituitary adenylate cyclase activating polypeptide as a novel hypophysiotropic factor in fish. AO Wong WS Li EK Lee MY Leung LY Tse BK Chow HR Lin JP Chang, Biochem Cell Biol 2000 78 3 329 343 10.1139/bcb-78-3-329 10949084
52. Molecular evolution of the growth hormone-releasing hormone/pituitary adenylate cyclase-activating polypeptide gene family. Functional implication in the regulation of growth hormone secretion. M Montero L Yon S Kikuyama S Dufour H Vaudry, J Mol Endocrinol 2000 25 2 157 168 10.1677/jme.0.0250157 11013344
53. VIP-, substance P-, gastrin/CCK-, bombesin-, somatostatin- and glucagon-like immunoreactivities in the gut of the rainbow trout, Salmo gairdneri. S Holmgren C Vaillant R Dimaline, Cell Tissue Res 1982 223 1 141 153 10.1007/BF00221505 6175424
54. Characterization of the vasoactive intestinal polypeptide (VIP) in the gut of fishes. M Fouchereau-Peron M Laburthe J Besson G Rosselin Y Le Gal, Comp Biochem Physiol 1980 65A 489 492 10.1016/0300-9629(80)90064-X
55. The isolation and chemical characterization of a novel vasoactive intestinal peptide-related peptide from a teleost fish, the cod, Gadus morhua. DT Thwaites J Young MC Thorndyke R Dimaline, Biochim Biophys Acta 1989 999 2 217 220 2480821
56. Stimulation of gastric acid secretion and suppression of VIP-like immunoreactivity by bombesin in the Atlantic codfish, Gadus morhua. B Holstein CS Humphrey, Acta Physiol Scand 1980 109 2 217 223 7424541
57. Influence of vasoactive intestinal peptide and urotensin II on the absorption of water and NaCl by the anterior intestine of the tilapia, Sarotherodon mossambicus. JR Mainoya HA Bern, Zool Sci 1984 1 100-105
58. Cloning, expression, and tissue localisation of prolactin in adult sea bream (Sparus aurata). CR Santos L Brinca PM Ingleton DM Power, Gen Comp Endocrinol 1999 114 1 57 66 10.1006/gcen.1998.7228 10094859
59. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. SF Altschul TL Madden AA Schaffer J Zhang Z Zhang W Miller DJ Lipman, Nucleic Acids Res 1997 25 17 3389 3402 9254694 10.1093/nar/25.17.3389
60. Salmon Genome Project. http://www.salmongenome.no
61. NCBI database. http://www.ncbi.nih.gov
62. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins, Nucleic Acids Res 1997 25 24 4876 4882 9396791 10.1093/nar/25.24.4876
63. Genedoc software. http://www.psc.edu/biomed/genedoc
64. The neighbor-joining method: a new method for reconstructing phylogenetic trees. N Saitou M Nei, Mol Biol Evol 1987 4 4 406 425 3447015
65. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. S Kumar K Tamura M Nei, Brief Bioinform 2004 5 2 150 163 10.1093/bib/5.2.150 15260895
66. G6b, a novel immunoglobulin superfamily member encoded in the human major histocompatibility complex, interacts with SHP-1 and SHP-2. EC de Vet B Aguado RD Campbell, J Biol Chem 2001 276 45 42070 42076 10.1074/jbc.M103214200 11544253
67. Characterization of a human lysophosphatidic acid acyltransferase that is encoded by a gene located in the class III region of the human major histocompatibility complex. B Aguado RD Campbell, J Biol Chem 1998 273 7 4096 4105 10.1074/jbc.273.7.4096 9461603
68. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. UK Laemmli, Nature 1970 227 5259 680 685 10.1038/227680a0 5432063
69. ExPASy Proteomics Server. http://www.expasy.ch