Signal detection in high-resolution mass spectrometry data

Journal of Proteome Research

Volumn 7, Issue 1, 2008, Pages 276-285

  McLerran, Dale F ^a   Feng, Ziding ^a   Semmes, O John ^b   Cazares, Lisa ^b   Randolph, Timothy W ^a  

^a USA   (United States)

^b EASTERN VIRGINIA MEDICAL SCHOOL   (United States)

Author keywords

Background signal; High resolution; Mass spectrometry; Robust regression, isotopic peaks; Wavelet

Indexed keywords

ACCURACY; ARTICLE; INSTRUMENT; MASS SPECTROMETRY; PEPTIDE ANALYSIS; PRIORITY JOURNAL; REPRODUCIBILITY; SIGNAL DETECTION; SIGNAL NOISE RATIO;

DATA INTERPRETATION, STATISTICAL; MASS SPECTROMETRY; SIGNAL PROCESSING, COMPUTER-ASSISTED;

EID: 38649089453     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr700640a     Document Type: Article

References (21)

1. Yasui, Y.; Pepe, M.; Thompson, M. L.; Adam, B. L.; Wright, G. L.; Qu, Y.; Potter, J. D.; Winget, M.; Thornquist, M.; Feng, Z. Biostatistics 2003, 4, 449-463.
2. Randolph, T. W.; Yasui, Y. Biometrics 2006, 62, 589-597.
3. Kast, J.; Gentzel, M.; Wilm, M.; Richardson, K. J. Am. Soc. Mass Spectrom. 2003, 14, 766-776.
4. Busch, K. Spectroscopy 2004, 19, 44-52.
5. Yu, W.; Wu, B.; Lin, N.; Stone, K.; Williams, K.; Zhao, H. Comput. Biol. Chem. 2006, 30, 27-38.
6. Gay, S.; Binz, P.; Hochstrasser, D. F.; Appel, R. D. Electrophoresis 1999, 20, 3527-3534.
7. Gras, R.; Müller, M.; Gasteiger, E.; Gay, S.; Binz, P.; Bienvenut, W.; nad, J. C.; Sanchez, C. H.; Bairoch, A.; Hochstrasser, D.; Appel, R. Electrophoresis 1999, 20, 3535-3550.
8. Breen, E.; Hopwood, F.; Williams, K.; Wilkins, M. Electrophoresis 2000, 21, 2243-2251.
9. Bellew, M.; Coram, M.; Igra, M.; Fitzgibbon, M.; Randolph, T.; Wang, P.; Eng, J.; Lin, C.; Goodlett, D.; Fang, R.; Detter, A.; Zhang, H.; Whiteaker, J.; Paulovich, A.; McIntosh, M. Bioinformatics 2006, 22, 1902-1909.
10. Mann, M. Proceedings of the 43rd ASMS Conference on Mass Spectrometry and Allied Topics, 1996; p 639.
11. Wolski, W.; Farrow, M.; Emde, A.-K.; Lehrach, H.; Lalowski, M.; Reinert, K. Proteome Science 2006, 4, 18.
12. Gobom, J.; Mueller, M.; Egelhofer, V.; Theiss, D.; Lehrach, H.; Nordhoff, E. Anal. Chem. 2002, 74, 3915-3923.
13. Wolski, W.; Lalowski, M.; Jungblut, P.; Reinert, K. BMC Bioinf. 2005, 6, 203.
14. Wool, A.; Smilansky, Z. Proteomics 2002, 2, 1365-1373.
15. McLerran, D.; Grizzle, W. E.; Feng, Z.; Thompson, I. M.; Bigbee, W. L.; Cazares, L. H.; Chan, D. W.; Dahlgren, J.; Diaz, J.; Kagan, J.; Lin, D.; Malik, G.; Oelschlager, D.; Partin, A.; Randolph, T.; Sokoll, L.; Srivastava, S.; Srivastava, S.; Thornquist, M.; Troyer, D.; Wright, G. L.; Zhang, Z.; Zhu, L.; Semmes, O. J. Clin. Chem. 2008, 54, DOI: 10.1373/clinchem.2007.091496.
16. Huber, P. J. Ann. Stat. 1973, 1, 799-821.
17. Hampel, F.; Ronchetti, E.; Rousseeaw, P.; Stahel, W. Robust Statistics, The Approach Based on Influence Functions; John Wiley and Sons: New York, 1986.
18. Cook, R. D. Residuals and Influence in Regression; Chapman and Hall: New York, 1982.
19. Percival, D. B.; Walden, A. T. Wavelet Methods for Time Series Analysis; Cambridge University Press: Cambridge, U.K., 2000.
20. Randolph, T. W.; Mitchell, B. L.; McLerran, D. F.; Lampe, P. D.; Feng, Z. Mol. Cell. Proteomics 2005, 4, 1990-1999.
21. The Mathworks Inc., Matlab version 7.5; 2007.