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Volumn 70, Issue 3, 2008, Pages 659-666

MAAP: Malarial adhesins and adhesin-like proteins predictor

Author keywords

Compositional property; Plasmodium; Plasmodium falciparum; Support vector machine; Vaccine targets

Indexed keywords

ADHESIN; ADHESIN LIKE PROTEIN; ANTIGEN; CELL RECEPTOR; CIRCUMSPOROZOITE PROTEIN; ERYTHROCYTE MEMBRANE PROTEIN 2; INTERSPERSED REPEAT ANTIGEN; MEMBRANE ANTIGEN; MEMBRANE PROTEIN; MEROZOITE SURFACE PROTEIN 6; MICRONEME PROTEIN 1; PROTOZOAL PROTEIN; RIFIN; STEVOR; SURFIN; THROMBOSPONDIN; THROMBOSPONDIN RELATED ANONYMOUS PROTEIN; UNCLASSIFIED DRUG; VIR12 LIKE PROTEIN; VIR12 PROTEIN; VIR18 LIKE PROTEIN; VIR18 PROTEIN; VIR4 PROTEIN;

EID: 38549123987     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.21568     Document Type: Article
Times cited : (31)

References (43)
  • 1
    • 33749989605 scopus 로고    scopus 로고
    • Transporters involved in resistance to antimalarial drugs
    • Valderramos SG, Fidock DA. Transporters involved in resistance to antimalarial drugs. Trends Pharmacol Sci 2006;27:594-601.
    • (2006) Trends Pharmacol Sci , vol.27 , pp. 594-601
    • Valderramos, S.G.1    Fidock, D.A.2
  • 2
    • 33646559434 scopus 로고    scopus 로고
    • Plasmodium post-genomics: Better the bug you know?
    • Kooij TW, Janse CJ, Waters AP. Plasmodium post-genomics: better the bug you know? Nat Rev Microbiol 2006;4:344-357.
    • (2006) Nat Rev Microbiol , vol.4 , pp. 344-357
    • Kooij, T.W.1    Janse, C.J.2    Waters, A.P.3
  • 3
    • 15044338866 scopus 로고    scopus 로고
    • The global distribution of clinical episodes of Plasmodium falciparum malaria
    • Snow RW, Guerra CA, Noor AM, Myint HY, Hay SI. The global distribution of clinical episodes of Plasmodium falciparum malaria. Nature 2005;434:214-217.
    • (2005) Nature , vol.434 , pp. 214-217
    • Snow, R.W.1    Guerra, C.A.2    Noor, A.M.3    Myint, H.Y.4    Hay, S.I.5
  • 4
    • 0042063666 scopus 로고    scopus 로고
    • Cytoadherence and sequestration in Plasmodium falciparum: Defining the ties that bind
    • Sherman IW, Eda S, Winograd E. Cytoadherence and sequestration in Plasmodium falciparum: defining the ties that bind. Microbes Infect 2003;5:897-909.
    • (2003) Microbes Infect , vol.5 , pp. 897-909
    • Sherman, I.W.1    Eda, S.2    Winograd, E.3
  • 5
    • 0029918601 scopus 로고    scopus 로고
    • Plasmodium falciparum erythrocyte membrane protein 1 is a parasitized erythrocyte receptor for adherence to CD36 thrombospondin and intercellular adhesion molecule 1
    • Baruch DI, Gormley JA, Ma C, Howard RJ, Pasloske BL. Plasmodium falciparum erythrocyte membrane protein 1 is a parasitized erythrocyte receptor for adherence to CD36 thrombospondin and intercellular adhesion molecule 1. Proc Natl Acad Sci USA 1996;93:3497-3502.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 3497-3502
    • Baruch, D.I.1    Gormley, J.A.2    Ma, C.3    Howard, R.J.4    Pasloske, B.L.5
  • 6
    • 33645777010 scopus 로고    scopus 로고
    • Mutually exclusive expression of virulence genes by malaria parasites is regulated independently of antigen production
    • Dzikowski R, Frank M, Deitsch K. Mutually exclusive expression of virulence genes by malaria parasites is regulated independently of antigen production. PLoS Pathog 2006;2:e22.
    • (2006) PLoS Pathog , vol.2
    • Dzikowski, R.1    Frank, M.2    Deitsch, K.3
  • 7
    • 33745585336 scopus 로고    scopus 로고
    • The role of KAHRP domains in knob formation and cytoadherence of P falciparum-infected human erythrocytes
    • Rug M, Prescott SW, Fernandez KM, Cooke BM, Cowman AF. The role of KAHRP domains in knob formation and cytoadherence of P falciparum-infected human erythrocytes. Blood 2006;108:370-378.
    • (2006) Blood , vol.108 , pp. 370-378
    • Rug, M.1    Prescott, S.W.2    Fernandez, K.M.3    Cooke, B.M.4    Cowman, A.F.5
  • 8
    • 0026328552 scopus 로고    scopus 로고
    • Ockenhouse CF, Klotz FW, Tandon NN, Jamieson GA. Sequestrin, a CD36 recognition protein on Plasmodium falciparum malaria infected erythrocytes identified by anti-idiotype antibodies. Proc Natl Acad Sci USA 1991;88:3175-3179.
    • Ockenhouse CF, Klotz FW, Tandon NN, Jamieson GA. Sequestrin, a CD36 recognition protein on Plasmodium falciparum malaria infected erythrocytes identified by anti-idiotype antibodies. Proc Natl Acad Sci USA 1991;88:3175-3179.
  • 10
    • 0037015614 scopus 로고    scopus 로고
    • Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S, Paulsen IT, James K, Eisen JA, Rutherford K, Salzberg SL, Craig A, Kyes S, Chan MS, Nene V, Shallom SJ, Suh B, Peterson J, Angiuoli S, Pertea M, Allen J, Selengut J, Haft D, Mather MW, Vaidya AB, Martin DM, Fairlamb AH, Fraunholz MJ, Roos DS, Ralph SA, McFadden GI, Cummings LM, Subramanian GM, Mungall C, Venter JC, Carucci DJ, Hoffman SL, Newbold C, Davis RW, Fraser CM, Barrell B. Genome sequence of the human malaria parasite Plasmodium falciparum. Nature 2002;419:498-511.
    • Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S, Paulsen IT, James K, Eisen JA, Rutherford K, Salzberg SL, Craig A, Kyes S, Chan MS, Nene V, Shallom SJ, Suh B, Peterson J, Angiuoli S, Pertea M, Allen J, Selengut J, Haft D, Mather MW, Vaidya AB, Martin DM, Fairlamb AH, Fraunholz MJ, Roos DS, Ralph SA, McFadden GI, Cummings LM, Subramanian GM, Mungall C, Venter JC, Carucci DJ, Hoffman SL, Newbold C, Davis RW, Fraser CM, Barrell B. Genome sequence of the human malaria parasite Plasmodium falciparum. Nature 2002;419:498-511.
  • 11
    • 14644435046 scopus 로고    scopus 로고
    • SPAAN: A software program for prediction of adhesins and adhesin-like proteins using neural networks
    • Sachdeva G, Kumar K, Jain P, Ramachandran S. SPAAN: a software program for prediction of adhesins and adhesin-like proteins using neural networks. Bioinformatics 2005;21:483-491.
    • (2005) Bioinformatics , vol.21 , pp. 483-491
    • Sachdeva, G.1    Kumar, K.2    Jain, P.3    Ramachandran, S.4
  • 14
    • 33747784964 scopus 로고    scopus 로고
    • Expression localization and erythrocyte binding activity of Plasmodium yoelii merozoite surface protein-8
    • Shi Q, Cernetich-Ott A, Lynch MM, Burns JM, Jr. Expression localization and erythrocyte binding activity of Plasmodium yoelii merozoite surface protein-8. Mol Biochem Parasitol 2006;1492:231-241.
    • (2006) Mol Biochem Parasitol , vol.1492 , pp. 231-241
    • Shi, Q.1    Cernetich-Ott, A.2    Lynch, M.M.3    Burns Jr., J.M.4
  • 15
    • 33750704849 scopus 로고    scopus 로고
    • Kauth CW, Woehlbier U, Kern M, Mekonnen Z, Lutz R, Mucke N, Langowski J, Bujard H. Interactions between merozoite surface proteins 1, 6 and 7 of the malaria parasite Plasmodium falciparum. J Biol Chem 2006;28142:31517- 31527.
    • Kauth CW, Woehlbier U, Kern M, Mekonnen Z, Lutz R, Mucke N, Langowski J, Bujard H. Interactions between merozoite surface proteins 1, 6 and 7 of the malaria parasite Plasmodium falciparum. J Biol Chem 2006;28142:31517- 31527.
  • 16
    • 0023025450 scopus 로고
    • Synthetic peptides from the circumsporozoite proteins of Plasmodium falciparum and Plasmodium knowlesi recognize the human hepatoma cell line HepG2-A16 in vitro
    • Aley SB, Bates MD, Tam JP, Hollingdale MR. Synthetic peptides from the circumsporozoite proteins of Plasmodium falciparum and Plasmodium knowlesi recognize the human hepatoma cell line HepG2-A16 in vitro. J Exp Med 1986;1646:1915-1922.
    • (1986) J Exp Med , vol.1646 , pp. 1915-1922
    • Aley, S.B.1    Bates, M.D.2    Tam, J.P.3    Hollingdale, M.R.4
  • 17
    • 0025087029 scopus 로고
    • Cell-adhesive motif in region II of malarial circumsporozoite protein
    • Rich KA, George FW, IV, Law JL, Martin WJ. Cell-adhesive motif in region II of malarial circumsporozoite protein. Science 1990;249:1574-1577.
    • (1990) Science , vol.249 , pp. 1574-1577
    • Rich, K.A.1    George2    FW, I.V.3    Law, J.L.4    Martin, W.J.5
  • 18
    • 17844406630 scopus 로고    scopus 로고
    • Do malaria ookinete surface proteins P25 and P28 mediate parasite entry into mosquito midgut epithelial cells?
    • Baton LA, Ranford-Cartwright LC. Do malaria ookinete surface proteins P25 and P28 mediate parasite entry into mosquito midgut epithelial cells? Malar J 2005;41:15.
    • (2005) Malar J , vol.41 , pp. 15
    • Baton, L.A.1    Ranford-Cartwright, L.C.2
  • 19
    • 0036464653 scopus 로고    scopus 로고
    • Contribution of parasite proteins to altered mechanical properties of malaria-infected red blood cells
    • Glenister FK, Coppel RL, Cowman AF, Mohandas N, Cooke BM. Contribution of parasite proteins to altered mechanical properties of malaria-infected red blood cells. Blood 2002;99:1060-1063.
    • (2002) Blood , vol.99 , pp. 1060-1063
    • Glenister, F.K.1    Coppel, R.L.2    Cowman, A.F.3    Mohandas, N.4    Cooke, B.M.5
  • 21
    • 0034034892 scopus 로고    scopus 로고
    • Developmental arrest of the human malaria parasite Plasmodium falciparum within the mosquito midgut via CTRP gene disruption
    • Templeton TJ, Kaslow DC, Fidock DA. Developmental arrest of the human malaria parasite Plasmodium falciparum within the mosquito midgut via CTRP gene disruption. Mol Microbiol 2000;36:1-9.
    • (2000) Mol Microbiol , vol.36 , pp. 1-9
    • Templeton, T.J.1    Kaslow, D.C.2    Fidock, D.A.3
  • 22
    • 33747366999 scopus 로고    scopus 로고
    • Immune responses in mice induced by prime-boost schemes of the Plasmodium falciparum apical membrane antigen 1 PfAMA1-based DNA protein and recombinant modified vaccinia Ankara vaccines
    • Miao J, Li X, Liu Z, Xue C, Bujard H, Cui L. Immune responses in mice induced by prime-boost schemes of the Plasmodium falciparum apical membrane antigen 1 PfAMA1-based DNA protein and recombinant modified vaccinia Ankara vaccines. Vaccine 2006;24:6187-6198.
    • (2006) Vaccine , vol.24 , pp. 6187-6198
    • Miao, J.1    Li, X.2    Liu, Z.3    Xue, C.4    Bujard, H.5    Cui, L.6
  • 23
    • 0033991789 scopus 로고    scopus 로고
    • EBL-1, a putative erythrocyte binding protein of Plasmodium falciparum maps within a favored linkage group in two genetic crosses
    • Peterson DS, Wellems TE. EBL-1, a putative erythrocyte binding protein of Plasmodium falciparum maps within a favored linkage group in two genetic crosses. Mol Biochem Parasitol 2000;105:105-113.
    • (2000) Mol Biochem Parasitol , vol.105 , pp. 105-113
    • Peterson, D.S.1    Wellems, T.E.2
  • 25
    • 0029057321 scopus 로고
    • Plasmodium vivax: A glimpse into the unique and shared biology of the merozoite
    • Barnwell JW, Galinski MR. Plasmodium vivax: a glimpse into the unique and shared biology of the merozoite. Ann Trop Med Parasitol 1995;89:113-120.
    • (1995) Ann Trop Med Parasitol , vol.89 , pp. 113-120
    • Barnwell, J.W.1    Galinski, M.R.2
  • 26
    • 2942707845 scopus 로고    scopus 로고
    • Epidermal growth factor-like motifs 1 and 2 of Plasmodium vivax merozoite surface protein 1 are critical domains in erythrocyte invasion
    • Han HJ, Park SG, Kim SH, Hwang SY, Han J, Traicoff J, Kho WG, Chung JY. Epidermal growth factor-like motifs 1 and 2 of Plasmodium vivax merozoite surface protein 1 are critical domains in erythrocyte invasion. Biochem Biophys Res Commun 2004;320:563-570.
    • (2004) Biochem Biophys Res Commun , vol.320 , pp. 563-570
    • Han, H.J.1    Park, S.G.2    Kim, S.H.3    Hwang, S.Y.4    Han, J.5    Traicoff, J.6    Kho, W.G.7    Chung, J.Y.8
  • 27
    • 33750742789 scopus 로고    scopus 로고
    • Cloning, expression, and characterisation of a Plasmodium vivax MSP7 family merozoite surface protein
    • Mongui A, Perez-Leal O, Soto SC, Cortes J, Patarroyo MA. Cloning, expression, and characterisation of a Plasmodium vivax MSP7 family merozoite surface protein. Biochem Biophys Res Commun 2006;351:639-644.
    • (2006) Biochem Biophys Res Commun , vol.351 , pp. 639-644
    • Mongui, A.1    Perez-Leal, O.2    Soto, S.C.3    Cortes, J.4    Patarroyo, M.A.5
  • 28
    • 0034115851 scopus 로고    scopus 로고
    • Naturally acquired and vaccine-elicited antibodies block erythrocyte cytoadherence of the Plasmodium vivax Duffy binding protein
    • Michon P, Fraser T, Adams JH. Naturally acquired and vaccine-elicited antibodies block erythrocyte cytoadherence of the Plasmodium vivax Duffy binding protein. Infect Immun 2000;68:3164-3171.
    • (2000) Infect Immun , vol.68 , pp. 3164-3171
    • Michon, P.1    Fraser, T.2    Adams, J.H.3
  • 29
    • 0035986878 scopus 로고    scopus 로고
    • Evolutionary relationships of conserved cysteine-rich motifs in adhesive molecules of malaria parasites
    • Michon P, Stevens JR, Kaneko O, Adams JH. Evolutionary relationships of conserved cysteine-rich motifs in adhesive molecules of malaria parasites. Mol Biol Evol 2002;19:1128-1142.
    • (2002) Mol Biol Evol , vol.19 , pp. 1128-1142
    • Michon, P.1    Stevens, J.R.2    Kaneko, O.3    Adams, J.H.4
  • 30
    • 0141557672 scopus 로고    scopus 로고
    • Analysis of immunological nonresponsiveness to the 19-kilodalton fragment of merozoite surface Protein 1 of Plasmodium yoelii: Rescue by chemical conjugation to diphtheria toxoid (DT) and enhancement of immunogenicity by prior DT vaccination
    • Stanisic DI, Martin LB, Liu XQ, Jackson D, Cooper J, Good MF. Analysis of immunological nonresponsiveness to the 19-kilodalton fragment of merozoite surface Protein 1 of Plasmodium yoelii: rescue by chemical conjugation to diphtheria toxoid (DT) and enhancement of immunogenicity by prior DT vaccination. Infect Immun 2003;71:5700-5713.
    • (2003) Infect Immun , vol.71 , pp. 5700-5713
    • Stanisic, D.I.1    Martin, L.B.2    Liu, X.Q.3    Jackson, D.4    Cooper, J.5    Good, M.F.6
  • 31
    • 38549160593 scopus 로고    scopus 로고
    • http://www.ncbi.nlm.nih.gov/Web/Newsltr/Spring04/blastlab.html; ftp://ftp.ncbi.nih.gov/blast/executables.
  • 33
    • 0002714543 scopus 로고    scopus 로고
    • Making large-scale SVM learning practical
    • Schölkopf B, Burges C, Smola A, editors, Cambridge, MA: MIT Press;
    • Joachims T. Making large-scale SVM learning practical. In: Schölkopf B, Burges C, Smola A, editors. Advances in Kernel methods - support vector learning. Cambridge, MA: MIT Press; 1999. pp. 169-185.
    • (1999) Advances in Kernel methods - support vector learning , pp. 169-185
    • Joachims, T.1
  • 34
    • 1342268087 scopus 로고    scopus 로고
    • Analysis and prediction of affinity of TAP binding peptides using cascade SVM
    • Bhasin M, Raghava GPS. Analysis and prediction of affinity of TAP binding peptides using cascade SVM. Protein Sci 2004;13:596-607.
    • (2004) Protein Sci , vol.13 , pp. 596-607
    • Bhasin, M.1    Raghava, G.P.S.2
  • 35
    • 0016772212 scopus 로고
    • Comparison of the predicted and observed secondary structure of T4 phage lysozyme
    • Matthews BW. Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim Biophys Acta 1975;405:442-451.
    • (1975) Biochim Biophys Acta , vol.405 , pp. 442-451
    • Matthews, B.W.1
  • 36
    • 38549098533 scopus 로고    scopus 로고
    • R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing; 2006.
    • R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing; 2006.
  • 38
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • Krogh A, Larsson B, von Heijne G, Sonnhammer ELL. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 2001;305:567-580.
    • (2001) J Mol Biol , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    von Heijne, G.3    Sonnhammer, E.L.L.4
  • 39
    • 0031614678 scopus 로고    scopus 로고
    • A hidden Markov model for predicting transmembrane helices in protein sequences
    • Glasgow J, Littlejohn T, Major F, Lathrop R, Sankoff D, Sensen C, editors, Menlo Park, CA: AAAI Press;
    • Sonnhammer ELL, von Heijne G, Krogh A. A hidden Markov model for predicting transmembrane helices in protein sequences. In: Glasgow J, Littlejohn T, Major F, Lathrop R, Sankoff D, Sensen C, editors. Proceedings of the sixth international conference on intelligent systems for molecular biology. Menlo Park, CA: AAAI Press; 1998. pp 175-182.
    • (1998) Proceedings of the sixth international conference on intelligent systems for molecular biology , pp. 175-182
    • Sonnhammer, E.L.L.1    von Heijne, G.2    Krogh, A.3
  • 40
    • 0030614959 scopus 로고    scopus 로고
    • Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
    • Nielsen H, Engelbrecht J, Brunak S, von Heijne G. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng 1997;10:1-6.
    • (1997) Protein Eng , vol.10 , pp. 1-6
    • Nielsen, H.1    Engelbrecht, J.2    Brunak, S.3    von Heijne, G.4
  • 42
    • 6344263537 scopus 로고    scopus 로고
    • Plasmodium interspersed repeats: The major multigene superfamily of malaria parasites
    • Janssen CS, Phillips RS, Turner CM, Barrett MP. Plasmodium interspersed repeats: the major multigene superfamily of malaria parasites. Nucleic Acids Res 2004;32:5712-5720.
    • (2004) Nucleic Acids Res , vol.32 , pp. 5712-5720
    • Janssen, C.S.1    Phillips, R.S.2    Turner, C.M.3    Barrett, M.P.4
  • 43
    • 0028081914 scopus 로고
    • Dimorphism and intergenic recombination within the microneme protein MP-1 gene family of Plasmodium knowlesi
    • Prickett MD, Smarz TR, Adams JH. Dimorphism and intergenic recombination within the microneme protein MP-1 gene family of Plasmodium knowlesi. Mol Biochem Parasitol 1994;63:37-48.
    • (1994) Mol Biochem Parasitol , vol.63 , pp. 37-48
    • Prickett, M.D.1    Smarz, T.R.2    Adams, J.H.3


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