Localization and Characterization of Protein-Protein Interaction Sites

Methods in Enzymology

Volumn 429, Issue , 2007, Pages 139-161

  Singh, Chingakham Ranjit ^a   Asano, Katsura ^a  

^a KANSAS STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GLUTATHIONE TRANSFERASE; PROTEIN; HYBRID PROTEIN; INITIATION FACTOR;

BINDING SITE; HUMAN; METHODOLOGY; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN MODIFICATION; PROTEIN PROTEIN INTERACTION; REVIEW; SITE DIRECTED MUTAGENESIS; TWO HYBRID SYSTEM; YEAST; AFFINITY CHROMATOGRAPHY; ARTICLE; GENETICS; IMMUNOPRECIPITATION; PHYSIOLOGY; PROTEIN ANALYSIS; SACCHAROMYCES CEREVISIAE;

CHROMATOGRAPHY, AFFINITY; EUKARYOTIC INITIATION FACTORS; GLUTATHIONE TRANSFERASE; IMMUNOPRECIPITATION; MUTAGENESIS, SITE-DIRECTED; PROTEIN INTERACTION DOMAINS AND MOTIFS; PROTEIN INTERACTION MAPPING; RECOMBINANT FUSION PROTEINS; SACCHAROMYCES CEREVISIAE; TWO-HYBRID SYSTEM TECHNIQUES;

EID: 38449119672     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0076-6879(07)29007-X     Document Type: Chapter

References (26)

1. Asano K., and Hinnebusch A.G. Protein interactions important in eukaryotic translation initiation. In: MacDonald P.N. (Ed). "Two Hybrid Systems, Methods and Protocols" Vol. 177 (2001), Humana Press, Inc., Totowa, NJ 179-198
2. Asano K., Phan L., Anderson J., and Hinnebusch A.G. Complex formation by all five homologues of mammalian translation initiation factor 3 subunits from yeast Saccharomyces cerevisiae. J. Biol. Chem. 273 (1998) 18573-18585
3. Asano K., Krishnamoorthy T., Phan L., Pavitt G.D., and Hinnebusch A.G. Conserved bipartite motifs in yeast eIF5 and eIF2Be, GTPase-activating and GDP-GTP exchange factors in translation initiation, mediate binding to their common substrate eIF2. EMBO J. 18 (1999) 1673-1688
4. Met is an important translation initiation intermediate in vivo. Genes Dev. 14 (2000) 2534-2546
5. Asano K., Lon P., Krishnamoorthy T., Pavitt G.D., Gomez E., Hannig E.M., Nika J., Donahue T.F., Huang H.-K., and Hinnebusch A.G. Analysis and reconstitution of translation initiation in vitro. Methods Enzymol. 351 (2002) 221-247
6. Bartel P.L., Chien C.T., Stemglanz R., and Fields S. Using the two-hybrid system to detect protein-protein interactions. In: Hartley D.A. (Ed). "Cellular Interactions in Development: A Practical Approach" (1993), Oxford University Press, Oxford 153-179
7. Bartel P.L., Roecklein J.A., SenGupta D., and Fields S. A protein linkage map of Escherichia coli bacteriophage T7. Nature Genet. 12 (1996) 72-77
8. Bendixen C., Gangloff S., and Rothestein R. A yeast mating-selection scheme for detection of protein-protein interactions. Nucleic Acids Res. 22 (1994) 1778-1779
9. Boeke J.D., LaCroute F., and Fink G.R. A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-Fluoro-orotic acid resistance. Mol. Gen. Genet. 197 (1984) 345-346
10. Boeke J.D., Trueheart J., Natsoulis G., and Fink G.R. 5-Fluoroorotic acid as a selective agent in yeast molecular genes. Methods Enzymol. 154 (1987) 164-175
11. Breeden L., and Nasmyth K. Cell cycle control of the yeast HO gene: Cis- and trans-acting regulators. Cell 48 (1987) 389-397
12. Harper J.W., Adami G.R., Wei N., Keyomarsi K., and Elledge S.J. The p21 Cdk-interacting protein Cip1 is a potent inhibitor of G1 Cyclin-dependent kinases. Cell 75 (1993) 805-816
13. Hinnebusch A.G., Dever T.E., and Asano K. Mechanism of translation initiation in the yeast Saccharomyces cerevisiae. In: Mathews M.B., Sonenberg N., and Hershey J.W.B. (Eds). "Translational Control in Biology and Medicine" (2006), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
14. Laemmli U. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227 (1970) 680-685
15. Miller J.H. "Experiments in Molecular Genetics." (1972), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
16. Pathak V.K., Nielsen P.J., Trachsel H., and Hershey J.W.B. Structure of the b subunit of translational initiation factor elF-2. Cell 54 (1988) 633-639
17. Pestova T.V., Lorsch J.R., and Hellen C.U.T. The mechanism of translation initiation in eukaryotes. In: Mathews M.B., Sonenberg N., and Hershey J.W.B. (Eds). "Translational Control in Biology and Medicine" (2006), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
18. Phan L., Zhang X., Asano K., Anderson J., Vornlocher H.P., Greenberg J.R., Qin J., and Hinnebusch A.G. Identification of a translation initiation factor 3 (eIF3) core complex, conserved in yeast and mammals, that interacts with eIF5. Mol. Cell. Biol. 18 (1998) 4935-4946
19. Schiestl R.H., Manivasakam P., Woods R.A., and Gietz R.D. Introducing DNA into yeast by transformation. Methods 5 (1993) 79-85
20. Shalev A., Valasek L., Pise-Masison C.A., Radonovich M., Phan L., Clayton J., He H., Brady J.N., Hinnebusch A.G., and Asano K. Saccharomyces cerevisiae protein Pci8p and human protein eIF3e/Int-6 interact with eukaryotic initiation factor 3 core complex by binding to cognate eIF3b subunits. J. Biol. Chem. 276 (2001) 34948-34957
21. Sherman F. Getting started with yeast. Methods Enzymol. 191 (1991) 3-21
22. Singh C.R., Yamamoto Y., and Asano K. Physical association of eukaryotic initiation factor 5 (eIF5) carboxyl terminal domain with the lysine-rich eIF2b segment strongly enhances its binding to eIF3. J. Biol. Chem. 279 (2004) 49644-49655
23. Tabor S., and Richardson C.C. DNA sequence analysis with a modified bacteriophage T7 DNA polymerase. Proc. Natl. Acad. Sci. USA 84 (1987) 4767-4771
24. Valásek L., Nielsen K.H., Zhang F., Fekete C.A., and Hinnebusch A.G. Interaction of eIF3 subunit NIP1/c with eIF1 and eIF5 promote preinitiation complex assembly and regulate start codon selection. Mol. Cell. Biol. 24 (2004) 9437-9455
25. Wolfner M., Yep D., Messenguy F., and Fink G.R. Integration of amino acid biosynthesis into the cell cycle of Saccharomyces cerevisiae. J. Mol. Biol. 96 (1975) 273-290
26. Yamamoto Y., Singh C.R., Marintchev A., Hall N.S., Hannig E.M., Wagner G., and Asano K. The eukaryotic initiation factor (eIF) 5 HEAT domain mediates multifactor assembly and scanning with distinct interfaces to eIF1, eIF2, eIF3 and eIF4G. Proc. Natl. Acad. Sci. USA 102 (2005) 16164-16169