Genetic and functional characterization of the LTR of HIV-1 subtypes A and C circulating in India

AIDS Research and Human Retroviruses

Volumn 23, Issue 11, 2007, Pages 1428-1433

  Rodriguez, Milka A ^a   Shen, Chengli ^a   Ratner, Deena ^a   Paranjape, Ramesh S ^b   Kulkarni, Smita S ^b   Chatterjee, Ramdas ^c   Gupta, Phalguni ^a  

^a UNIVERSITY OF PITTSBURGH GRADUATE SCHOOL OF PUBLIC HEALTH   (United States)

^b NATIONAL AIDS RESEARCH INSTITUTE   (India)

^c Chittaranjan Cancer Research Institute   (India)

Author keywords

[No Author keywords available]

Indexed keywords

IMMUNOGLOBULIN ENHANCER BINDING PROTEIN;

ADOLESCENT; ADULT; ARTICLE; CLINICAL ARTICLE; CLINICAL FEATURE; FEMALE; GENE ACTIVITY; GENE FUNCTION; GENE INSERTION; GENE ISOLATION; GENE SEQUENCE; GENETIC TRANSCRIPTION; GENETIC VARIABILITY; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; INDIA; MALE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; VIRUS STRAIN; BINDING SITE; CLASSIFICATION; DNA SEQUENCE; GENETIC POLYMORPHISM; GENETICS; GENOTYPE; ISOLATION AND PURIFICATION; LONG TERMINAL REPEAT; MOLECULAR GENETICS; PHYLOGENY; PHYSIOLOGY; PROMOTER REGION; SEQUENCE HOMOLOGY; VIROLOGY;

ADOLESCENT; ADULT; BINDING SITES; FEMALE; GENOTYPE; HIV INFECTIONS; HIV LONG TERMINAL REPEAT; HIV-1; HUMANS; INDIA; MALE; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, GENETIC; PROMOTER REGIONS (GENETICS); SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; TRANSCRIPTION, GENETIC;

EID: 38449107756     PISSN: 08892229     EISSN: None     Source Type: Journal    
DOI: 10.1089/aid.2007.0152     Document Type: Article

References (19)

1. Geretti AM: HIV-1 subtypes: Epidemiology and significance for HIV management. Curr Opin Infect Dis 2006;19(1):1-7.2.
2. Steinbrook R: HIV in India - a complex epidemic. N Engl J Med 2007;356(11):1089-1093.
3. Rodriguez MA, Chen Y, Craigo JK, et al.: Construction and characterization of an infectious molecular clone of HIV-1 subtype A of Indian origin. Virology 2006;345(2):328-336.
4. Delwart EL, Herring B, Rodrigo AG, and Mullins JI: Genetic subtyping of human immunodeficiency virus using a heteroduplex mobility assay. PCR Methods Appl 1995;4(5):S202-216.
5. Ramirez de Arellano E, Soriano V, Alcamil J, and Holguin A: New findings on transcription regulation across different HIV-1 subtypes. AIDS Rev 2006;8(1):9-16.
6. De Arellano ER, Soriano V, and Holguin A: Genetic analysis of regulatory, promoter, and TAR regions of LTR sequences belonging to HIV type 1 non-B subtypes. AIDS Res Hum Retroviruses 2005;21(11):949-954.
7. Naghavi MH, Schwartz S, Sonnerborg A, and Vahlne A: Long terminal repeat promoter/enhancer activity of different subtypes of HIV type 1. AIDS Res Hum Retroviruses 1999;15(14):1293-1303.
8. De Baar MP, De Ronde A, Berkhout B, et al.: Subtype-specific sequence variation of the HIV type 1 long terminal repeat and primer-binding site. AIDS Res Hum Retroviruses 2000;16(5):499-504.
9. van Opijnen T, Jeeninga RE, Boerlijst MC, et al.: Human immunodeficiency virus type 1 subtypes have a distinct long terminal repeat that determines the replication rate in a host-cell-specific manner. J Virol 2004;78(7):3675-3683.
10. Montano MA, Nixon CP, and Essex M: Dysregulation through the NF-kappaB enhancer and TATA box of the human immunodeficiency virus type 1 subtype E promoter. J Virol 1998;72(10):8446-8452.
11. Hunt GM, Johnson D, and Tiemesse CT: Characterisation of the long terminal repeat regions of South African human immunodeficiency virus type 1 isolates. Virus Genes 2001;23(1):27-34.
12. Choudhury S, Montano MA, Womack C, et al.: Increased promoter diversity reveals a complex phylogeny of human immunodeficiency virus type 1 subtype C in India. J Hum Virol 2000;3(1):35-43.
13. Munkanta M, Handema R, Kasai H, et al.: Predominance of three NF-kappaB binding sites in the long terminal repeat region of HIV type 1 subtype C isolates from Zambia. AIDS Res Hum Retroviruses 2005;21(10):901-906.
14. Jeeninga RE, Hoogenkamp M, Armand-Ugon M, de Baar M, Verhoef K, and Berkhout B: Functional differences between the long terminal repeat transcriptional promoters of human immunodeficiency virus type 1 subtypes A through G. J Virol 2000;74(8):3740-3751.
15. Montano MA, Novitsky VA, Blackard JT, Cho NL, Katzenstein DA, and Essex M: Divergent transcriptional regulation among expanding human immunodeficiency virus type 1 subtypes. J Virol 1997;71(11):8657-8665.
16. Mochizuki N, Otsuka N, Matsuo K, et al.: An infectious DNA clone of HIV type 1 subtype C. AIDS Res Hum Retroviruses 1999;15(14):1321-1324.
17. Ramirez de Arellano E, Martin C, Soriano V, Alcami J, and Holguin A: Genetic analysis of the long terminal repeat (LTR) promoter region in HIV-1-infected individuals with different rates of disease progression. Virus Genes 2007;34(2):111-116.
18. Pereira LA, Bentley K, Peeters A, Churchill MJ, and Deacon NJ: A compilation of cellular transcription factor interactions with the HIV-1 LTR promoter. Nucleic Acids Res 2000;28(3):663-668.
19. Collins KB, Patterson BK, Naus GJ, Landers DV, and Gupta P: Development of an in vitro organ culture model to study transmission of HIV-1 in the female genital tract. Nat Med 2000;6(4):475-479.