-
1
-
-
0031293405
-
Classification of protein localization patterns obtained via fluorescence light microscopy
-
Chicago, IL, USA
-
Boland, M. V., Markey, M. K. and Murphy, R. F. (1997) Classification of protein localization patterns obtained via fluorescence light microscopy. 19th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Chicago, IL, USA.
-
(1997)
19th Annual International Conference of the IEEE Engineering in Medicine and Biology Society
-
-
Boland, M.V.1
Markey, M.K.2
Murphy, R.F.3
-
2
-
-
0032212323
-
Automated recognition of patterns characteristic of subcellular structures in fluorescence microscopy images
-
Boland, M. V., Markey, M. K. and Murphy, R. F. (1998) Automated recognition of patterns characteristic of subcellular structures in fluorescence microscopy images. Cytometry 33, 366-375.
-
(1998)
Cytometry
, vol.33
, pp. 366-375
-
-
Boland, M.V.1
Markey, M.K.2
Murphy, R.F.3
-
3
-
-
0036139314
-
A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of hela cells
-
Boland, M. V. and Murphy, R. F. (2001) A neural network classifier capable of recognizing the patterns of all major subcellular structures in fluorescence microscope images of hela cells. Bioinformatics 17, 1213-1223.
-
(2001)
Bioinformatics
, vol.17
, pp. 1213-1223
-
-
Boland, M.V.1
Murphy, R.F.2
-
4
-
-
0242391970
-
Organelle proteomics: Looking at less to see more
-
Brunet, S., Thibault, P., Gagnon, E., Kearney, P., Bergeron, J. J. and Desjardins, M. (2003) Organelle proteomics: looking at less to see more. Trends Cell Biol. 13, 629-638.
-
(2003)
Trends Cell Biol
, vol.13
, pp. 629-638
-
-
Brunet, S.1
Thibault, P.2
Gagnon, E.3
Kearney, P.4
Bergeron, J.J.5
Desjardins, M.6
-
5
-
-
15844414198
-
Objective clustering of proteins based on subcellular location patterns
-
Chen X. and Murphy, R. F. (2005) Objective clustering of proteins based on subcellular location patterns. J. Biomed. Biotechnol. 2005, 87-95.
-
(2005)
J. Biomed. Biotechnol
, vol.2005
, pp. 87-95
-
-
Chen, X.1
Murphy, R.F.2
-
6
-
-
0242410975
-
Location proteomics-building subcellular location trees from high resolution 3d fluorescence microscope images of randomly-tagged proteins
-
Chen, X., Velliste, M., Weinstein, S., Jarvik, J. W. and Murphy, R. F. (2003) Location proteomics-building subcellular location trees from high resolution 3d fluorescence microscope images of randomly-tagged proteins. Proc. SPIE 4962, 298-306.
-
(2003)
Proc. SPIE
, vol.4962
, pp. 298-306
-
-
Chen, X.1
Velliste, M.2
Weinstein, S.3
Jarvik, J.W.4
Murphy, R.F.5
-
7
-
-
0345305854
-
Prediction and classification of protein subcellular location-sequenceorder effect and pseudo amino acid composition
-
Chou, K. C. and Cai, Y. D. (2003) Prediction and classification of protein subcellular location-sequenceorder effect and pseudo amino acid composition. J. Cell. Biochem. 90, 1250-1260.
-
(2003)
J. Cell. Biochem
, vol.90
, pp. 1250-1260
-
-
Chou, K.C.1
Cai, Y.D.2
-
8
-
-
3042565868
-
Automatic identification of subcellular phenotypes on human cell arrays
-
Conrad, C., Erfle, H., Warnat, P., Daigle, N., Lorch, T., Ellenberg, J., Pepperkok, R. and Eils, R. (2004) Automatic identification of subcellular phenotypes on human cell arrays. Genome Res. 14, 1130-1136.
-
(2004)
Genome Res
, vol.14
, pp. 1130-1136
-
-
Conrad, C.1
Erfle, H.2
Warnat, P.3
Daigle, N.4
Lorch, T.5
Ellenberg, J.6
Pepperkok, R.7
Eils, R.8
-
9
-
-
0036264252
-
Automated recognition of intracellular organelles in confocal microscope images
-
Danckaert, A., Gonzalez-Couto, E., Bollondi, L., Thompson, N. and Hayes, B. (2002) Automated recognition of intracellular organelles in confocal microscope images. Traffic 3, 66-73.
-
(2002)
Traffic
, vol.3
, pp. 66-73
-
-
Danckaert, A.1
Gonzalez-Couto, E.2
Bollondi, L.3
Thompson, N.4
Hayes, B.5
-
10
-
-
33745027397
-
Quantitative fluorescent speckle microscopy of cytoskeleton dynamics
-
Danuser, G. andWaterman-Storer, C. M. (2006) Quantitative fluorescent speckle microscopy of cytoskeleton dynamics. Annu. Rev. Biophys. Biomol. Struct. 35, 361-387.
-
(2006)
Annu. Rev. Biophys. Biomol. Struct
, vol.35
, pp. 361-387
-
-
Danuser, G.1
Waterman-Storer, C.M.2
-
11
-
-
0142215475
-
Global analysis of protein expression in yeast
-
Ghaemmaghami, S., Huh, W. K., Bower, K., Howson, R. W., Belle, A., Dephoure, N., O'Shea, E. K. and Weissman, J. S. (2003) Global analysis of protein expression in yeast. Nature 425, 737-741.
-
(2003)
Nature
, vol.425
, pp. 737-741
-
-
Ghaemmaghami, S.1
Huh, W.K.2
Bower, K.3
Howson, R.W.4
Belle, A.5
Dephoure, N.6
O'Shea, E.K.7
Weissman, J.S.8
-
12
-
-
3242875263
-
Mitopred: A genome-scale method for prediction of nucleus-encoded mitochondrial proteins
-
Guda, C., Fahy, E. and Subramaniam, S. (2004) Mitopred: A genome-scale method for prediction of nucleus-encoded mitochondrial proteins. Bioinformatics 20, 1785-1794.
-
(2004)
Bioinformatics
, vol.20
, pp. 1785-1794
-
-
Guda, C.1
Fahy, E.2
Subramaniam, S.3
-
13
-
-
33750952101
-
Application of temporal texture features to automated analysis of protein subcellular locations in time series fluorescence microscope images
-
Hu, Y., Carmona, J. and Murphy, R. F. (2006)Application of temporal texture features to automated analysis of protein subcellular locations in time series fluorescence microscope images. Proc 2006 IEEE Intl Symp Biomedl Imag 1028-1031.
-
(2006)
Proc 2006 IEEE Intl Symp Biomedl Imag
, pp. 1028-1031
-
-
Hu, Y.1
Carmona, J.2
Murphy, R.F.3
-
14
-
-
84948655958
-
Image content-based retrieval and automated interpretation of fluorescence microscope images via the protein subcellular location image database
-
Huang, K., Lin, J., Gajnak, J. A. and Murphy, R. F. (2002) Image content-based retrieval and automated interpretation of fluorescence microscope images via the protein subcellular location image database. Proc 2002 IEEE Intl Symp Biomedl Imag 325-328.
-
(2002)
Proc 2002 IEEE Intl Symp Biomedl Imag
, pp. 325-328
-
-
Huang, K.1
Lin, J.2
Gajnak, J.A.3
Murphy, R.F.4
-
15
-
-
13344280993
-
Boosting accuracy of automated classification of fluorescence microscope images for location proteomics
-
Huang, K. and Murphy, R. F. (2004a) Boosting accuracy of automated classification of fluorescence microscope images for location proteomics. BMC Bioinformatics 5, 78.
-
(2004)
BMC Bioinformatics
, vol.5
-
-
Huang, K.1
Murphy, R.F.2
-
16
-
-
13844300843
-
From quantitative microscopy to automated image understanding
-
Huang, K. and Murphy, R. F. (2004b) From quantitative microscopy to automated image understanding. J. Biomed. Opt. 9, 893-912.
-
(2004)
J. Biomed. Opt
, vol.9
, pp. 893-912
-
-
Huang, K.1
Murphy, R.F.2
-
17
-
-
0142184341
-
Global analysis of the protein localization in budding yeast
-
Huh, W. K., Falvo, J. V., Gerke, L. C., Caroll, A. S., Howson, R. W., Weissman, J. S. and O'Shea, E. K. (2003) Global analysis of the protein localization in budding yeast. Nature 425, 686-691.
-
(2003)
Nature
, vol.425
, pp. 686-691
-
-
Huh, W.K.1
Falvo, J.V.2
Gerke, L.C.3
Caroll, A.S.4
Howson, R.W.5
Weissman, J.S.6
O'Shea, E.K.7
-
18
-
-
0029939608
-
Cd-tagging: A new approach to gene and protein discovery and analysis
-
Jarvik, J. W., Adler, S. A., Telmer, C. A., Subramaniam, V. and Lopez, A. J. (1996) Cd-tagging: A new approach to gene and protein discovery and analysis. BioTechniques 20, 896-904.
-
(1996)
BioTechniques
, vol.20
, pp. 896-904
-
-
Jarvik, J.W.1
Adler, S.A.2
Telmer, C.A.3
Subramaniam, V.4
Lopez, A.J.5
-
19
-
-
0036795576
-
In vivo functional proteomics: Mammalian genome annotation using cd-tagging
-
Jarvik, J. W., Fisher, G. W., Shi, C., Hennen, L., Hauser, C., Adler, S. and Berget, P. B. (2002) In vivo functional proteomics: Mammalian genome annotation using cd-tagging. BioTechniques 33, 852-867.
-
(2002)
BioTechniques
, vol.33
, pp. 852-867
-
-
Jarvik, J.W.1
Fisher, G.W.2
Shi, C.3
Hennen, L.4
Hauser, C.5
Adler, S.6
Berget, P.B.7
-
20
-
-
0021236391
-
Analytic studies of foam cells from breast cancer precursors
-
King, E. B., Kromhout, L. K., Chew, K. L., Mayall, B. H., Petrakis, N. L., Jensen, R. H. and Young, I. T. (1984) Analytic studies of foam cells from breast cancer precursors. Cytometry 5, 124-130.
-
(1984)
Cytometry
, vol.5
, pp. 124-130
-
-
King, E.B.1
Kromhout, L.K.2
Chew, K.L.3
Mayall, B.H.4
Petrakis, N.L.5
Jensen, R.H.6
Young, I.T.7
-
21
-
-
1542400030
-
Predicting subcellular localization of proteins using machine-learned classifiers
-
Lu, Z., Szafron, D., Greiner, R., Lu, P., Wishart, D. S., Poulin, B., Anvik, J., Macdonell, C. and Eisner, R. (2004) Predicting subcellular localization of proteins using machine-learned classifiers. Bioinformatics 20, 547-556.
-
(2004)
Bioinformatics
, vol.20
, pp. 547-556
-
-
Lu, Z.1
Szafron, D.2
Greiner, R.3
Lu, P.4
Wishart, D.S.5
Poulin, B.6
Anvik, J.7
Macdonell, C.8
Eisner, R.9
-
22
-
-
33645796494
-
Morphodynamic profiling of protrusion phenotypes
-
Machacek, M. and Danuser, G. (2006) Morphodynamic profiling of protrusion phenotypes. Biophys. J. 90, 1439-1452.
-
(2006)
Biophys. J
, vol.90
, pp. 1439-1452
-
-
Machacek, M.1
Danuser, G.2
-
24
-
-
0141921564
-
Robust numerical features for description and classification of subcellular location patterns in fluorescence microscope images
-
Murphy, R. F., Velliste, M. and Porreca, G. (2003) Robust numerical features for description and classification of subcellular location patterns in fluorescence microscope images. J. VLSI Sig. Proc. 35, 311-321.
-
(2003)
J. VLSI Sig. Proc
, vol.35
, pp. 311-321
-
-
Murphy, R.F.1
Velliste, M.2
Porreca, G.3
-
25
-
-
0033909566
-
Protein sorting signals and prediction of subcellular localization
-
Nakai, K. (2000) Protein sorting signals and prediction of subcellular localization. Adv. Protein Chem. 54, 277-344.
-
(2000)
Adv. Protein Chem
, vol.54
, pp. 277-344
-
-
Nakai, K.1
-
26
-
-
0141515750
-
Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs
-
Park, K. J. and Kanehisa, M. (2003) Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs. Bioinformatics 19, 1656-1663.
-
(2003)
Bioinformatics
, vol.19
, pp. 1656-1663
-
-
Park, K.J.1
Kanehisa, M.2
-
27
-
-
33745391854
-
Dynamic proteomics in individual human cells uncovers widespread cell-cycle dependence of nuclear proteins
-
Sigal, A., Milo, R., Cohen, A., Geva-Zatorsky, N., Klein, Y., Alaluf, I., Swerdlin, N., Perzov, N., Danon, T., Liron, Y., Raveh, T., Carpenter, A. E., Lahav, G. and Alon, U. (2006) Dynamic proteomics in individual human cells uncovers widespread cell-cycle dependence of nuclear proteins. Nat. Methods 3, 525-531.
-
(2006)
Nat. Methods
, vol.3
, pp. 525-531
-
-
Sigal, A.1
Milo, R.2
Cohen, A.3
Geva-Zatorsky, N.4
Klein, Y.5
Alaluf, I.6
Swerdlin, N.7
Perzov, N.8
Danon, T.9
Liron, Y.10
Raveh, T.11
Carpenter, A.E.12
Lahav, G.13
Alon, U.14
-
28
-
-
0034280113
-
Systematic subcellular localization of novel proteins identified by large-scale cdna sequencing
-
Simpson, J. C., Wellenreuther, R., Poustka, A., Pepperkok, R. and Wiemann, S. (2000) Systematic subcellular localization of novel proteins identified by large-scale cdna sequencing. EMBO Rep. 1, 287-292.
-
(2000)
EMBO Rep
, vol.1
, pp. 287-292
-
-
Simpson, J.C.1
Wellenreuther, R.2
Poustka, A.3
Pepperkok, R.4
Wiemann, S.5
-
29
-
-
29244477844
-
A human protein atlas for normal and cancer tissues based on antibody proteomics
-
Uhlen, M., Bjorling, E., Agaton, C., Szigyarto, C. A.-K., Amini, B., Andersen, E., Andersson, A.-C., Angelidou, P., Asplund, A., Cerjan, D., Ekstrom, M., Elobeid, A. and Eriksson, C. (2005) A human protein atlas for normal and cancer tissues based on antibody proteomics. Am. Soc. Biochem. Mol. Biol. 4, 1920-1932.
-
(2005)
Am. Soc. Biochem. Mol. Biol
, vol.4
, pp. 1920-1932
-
-
Uhlen, M.1
Bjorling, E.2
Agaton, C.3
Szigyarto, C.A.-K.4
Amini, B.5
Andersen, E.6
Andersson, A.-C.7
Angelidou, P.8
Asplund, A.9
Cerjan, D.10
Ekstrom, M.11
Elobeid, A.12
Eriksson, C.13
-
30
-
-
0022775071
-
Characterization of chromatin distribution in cell nuclei
-
Young, I. T., Verbeek, P. W. and Mayall, B. H. (1986) Characterization of chromatin distribution in cell nuclei. Cytometry 7, 467-474.
-
(1986)
Cytometry
, vol.7
, pp. 467-474
-
-
Young, I.T.1
Verbeek, P.W.2
Mayall, B.H.3
-
31
-
-
26444451080
-
Object type recognition for automated analysis of protein subcellular location
-
Zhao, T., Velliste, M., Boland, M. V. and Murphy, R. F. (2005) Object type recognition for automated analysis of protein subcellular location. IEEE Trans. Image Process. 14, 1351-1359.
-
(2005)
IEEE Trans. Image Process
, vol.14
, pp. 1351-1359
-
-
Zhao, T.1
Velliste, M.2
Boland, M.V.3
Murphy, R.F.4
|