Knowledge-level querying of temporal patterns in clinical research systems

Studies in Health Technology and Informatics

Volumn 129, Issue , 2007, Pages 311-315

  O'Connor, Martin J ^a   Shankar, Ravi D ^a   Parrish, David B ^b   Das, Amar K ^a  

^a STANFORD UNIVERSITY   (United States)

^b Immune Tolerance Network   (United States)

Author keywords

clinical trials; knowledge based systems; ontology; Semantic Web; temporal querying

Indexed keywords

CLINICAL RESEARCH; HIGH LEVEL LANGUAGES; INFORMATION MANAGEMENT; KNOWLEDGE BASED SYSTEMS; MEDICAL APPLICATIONS; ONTOLOGY; QUERY PROCESSING; SEMANTIC WEB;

CLINICAL TRIAL; LOW LEVEL REPRESENTATION; RESEARCH ACTIVITIES; RESEARCH DATA MANAGEMENTS; SEMANTIC WEB ONTOLOGIES; TEMPORAL CONSTRAINTS; TEMPORAL KNOWLEDGE; TEMPORAL QUERYING;

RELATIONAL DATABASE SYSTEMS;

ARTICLE; COMPUTER PROGRAM; DATA BASE; INFORMATION RETRIEVAL; KNOWLEDGE BASE; LINGUISTICS; MEDICAL RESEARCH; SEMANTICS; TIME;

BIOMEDICAL RESEARCH; DATABASES AS TOPIC; INFORMATION STORAGE AND RETRIEVAL; KNOWLEDGE BASES; SEMANTICS; SOFTWARE; TIME; VOCABULARY, CONTROLLED;

EID: 38449090592     PISSN: 09269630     EISSN: 18798365     Source Type: Book Series    
DOI: None     Document Type: Conference Paper

References (15)

1. Rotrosen D, Matthews JB, and Bluestone JA. The immune tolerance network: a new paradigm for developing tolerance-inducing therapies. J Allergy Clin Immunol 2002: 110 (1): 17-23.
2. Berners-Lee T, Hendler J, and Lassila O. The Semantic Web. Scientific American 2001: 35 (May): 43-52.
3. Knublauch H, Fergerson RW, Noy NF and Musen M. A. The Protégé OWL Plugin: an open development environment for semantic web applications. In: Third ISWC (ISWC 2004), Hiroshima, Japan, 2004; pp. 229-243.
4. O'Connor MJ, Knublauch H, Tu SW, Grossof B, Dean M, Grosso WE, and Musen MA. Supporting rule system interoperability on the Semantic Web with SWRL. Fourth International Semantic Web Conference (ISWC 2005), Galway, Ireland, 2005; pp. 974-986.
5. Snodgrass RT. On the semantics of 'now' in databases. ACM Trans Database Systems 1997: 22 (2): 171-214.
6. Snodgrass RT (Ed). The TSQL2 temporal query language. Kluwer Academic Publishers: Boston, 1995.
7. O'Connor MJ, Tu SW, and Musen MA. The Chronus II temporal database mediator. In: AMIA Annual Symposium, San Antonio, TX, 2002; pp. 567-571.
8. Shoham Y. Temporal logics in AI: semantical and ontological considerations. Artif Intell 1987: 33 (1): 89-104.
9. O'Connor MJ, Shankar RD, and Das AK. An ontologydriven mediator for querying time-oriented biomedical data. In: 19th IEEE Symposium on Computer-Based Medical Systems (CBMS2006), Salt Lake City, Utah, 2006; pp. 264-269.
10. Allen JF. Maintaining knowledge about temporal intervals. Comm ACM 1993: 26 (11): 832-843.
11. Shankar R, Martins SB, O'Connor MJ, Parrish D, and Das AK. Towards semantic interoperability in a clinical trials management system. In: Fifth International Semantic Web Conference (ISWC 2006), Athens, Georgia, 2006: pp. 901-912.
12. Das AK and Musen MA. Synchronus: a reusable software module for temporal integration. In: AMIA Annual Symposium, San Antonio, Texas, 2002: pp. 195-199.
13. Narayanan PS, O'Connor MJ, and Das AK. Ontologydriven mapping of temporal data in biomedical databases. In: AMIA Annual Symposium, Washington, DC, 2006: p. 1045.
14. Weng C, Kahn M, and Gennari J. Temporal knowledge representation for scheduling tasks in clinical trial protocols. In: AMIA Annual Symposium, San Antonio, Texas, November, 2002; pp. 879-83.
15. Deshpande AM, Brandt C, and Nadkarni PM. Temporal query of attribute-value patient data: utilizing the constraints of clinical studies. Int J Med Inform 2003: 70 (1): 59-77.