Polyploid origins in a circumpolar complex in Draba (Brassicaceae) inferred from cloned nuclear DNA sequences and fingerprints

Molecular Phylogenetics and Evolution

Volumn 32, Issue 3, 2004, Pages 695-710

  Grundt, Hanne Hegre ^a   Popp, Magnus ^b   Brochmann, Christian ^a   Oxelman, Bengt ^b  

^a UNIVERSITY OF OSLO   (Norway)

^b UPPSALA UNIVERSITY   (Sweden)

Author keywords

Allopolyploidy; Arctic alpine; Draba; ITS; Polyploid evolution; RAPD; RNA polymerase genes

Indexed keywords

PRIMER DNA; RIBOSOMAL SPACER DNA; RNA POLYMERASE II;

ARCTIC; ARTICLE; BRASSICACEAE; COMPARATIVE STUDY; DNA SEQUENCE; GENETICS; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYPLOIDY; RANDOM AMPLIFIED POLYMORPHIC DNA; SPECIES DIFFERENCE;

ARCTIC REGIONS; BASE SEQUENCE; BRASSICACEAE; DNA PRIMERS; DNA, RIBOSOMAL SPACER; EVOLUTION, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYPLOIDY; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; RNA POLYMERASE II; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

BRASSICACEAE; DRABA; DRABA FLADNIZENSIS; DRABA LACTEA; DRABA LONCHOCARPA; DRABA NIVALIS; DRABA PALANDERIANA; DRABA PORSILDII;

EID: 3843109162     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ympev.2004.04.006     Document Type: Article

References (56)

1. Abbott R.J, Smith L.C, Milne R.I, Crawford R.M.M, Wolff K, Balfour J. Molecular analysis of plant migration and refugia in the Arctic. Science. 289:2000;1343-1346
2. Alsos, I.G., 2003. Conservation biology of the most thermophilous plant species in the Arctic. Genetic variation, recruitment and phylogeography in a changing climate. Dr. Scient. thesis, University of Tromsø, Tromsø
3. Alsos I.G, Engelskjøn T, Taberlet P, Brochmann C. Circumpolar phylogeography of Vaccinium uliginosum inferred from cpDNA sequences. Bauhinia. 15:2001;74
4. Álvarez I, Wendel J.F. Ribosomal ITS sequences and plant phylogenetic inference. Mol. Phylogenet. Evol. 29:2003;417-434
5. The Arabidopsis Genome Initiative, 2000. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408, 796-815
6. Beilstein M.A, Windham M.D. A phylogenetic analysis of western North American Draba (Brassicaceae) based on nuclear ribosomal DNA sequences from the ITS region. Syst. Bot. 28:2003;584-592
7. Böcher T.W. Experimental and cytological studies on plant species. IX. Some arctic and montane crucifers. Biol. Skr. K. Dan. Vidensk. Selsk. 14:(7):1966;1-74
8. Brochmann C. Polyploid evolution in arctic-alpine Draba (Brassicaceae). Sommerfeltia Suppl. 4:1992;1-37
9. Brochmann C, Steen S.W. Sex and genes in the flora of Svalbard - implications for conservation biology and climate change. Norske Vidensk.-Akad. Mat.-Naturvitensk. Kl., Skr., Ny Ser. 38:1999;33-72
10. Brochmann C, Nilsson T, Gabrielsen T.M. A classical example of postglacial allopolyploid speciation re-examined using RAPD markers and nucleotide sequences: Saxifraga osloensis. Symb. Bot. Ups. 31:1996;75-89
11. Brochmann C, Soltis D.E, Soltis P.S. Electrophoretic relationships and phylogeny of Nordic polyploids in Draba (Brassicaceae). Plant Syst. Evol. 182:1992;35-70
12. Brochmann C, Soltis P.S, Soltis D.E. Multiple origins of the octoploid Scandinavian endemic Draba cacuminum: electrophoretic and morphological evidence. Nordic J. Bot. 12:1992;257-272
13. Brochmann C, Soltis P.S, Soltis D.E. Recurrent formation and polyphyly of Nordic polyploids in Draba (Brassicaceae). Am. J. Bot. 79:1992;673-688
14. Brochmann, C., Brysting, A.K., Alsos, I.G., Borgen, I., Grundt, H.H., Scheen, A.-C., Elven, R., (in press). Polyploidy in arctic plants. Bot. J. Linn. Soc
15. Clark A.G, Lanigan C.M.S. Prospects for estimating nucleotide divergence with RAPDs. Mol. Biol. Evol. 10:1993;1096-1111
16. Cody W.J. Flora of the Yukon Territory. second ed. :2000;NRC Research Press, Ottawa
17. Cook L.M, Soltis P.S, Brunsfeld S.J, Soltis D.E. Multiple independent formations of Tragopogon tetraploids (Asteraceae): evidence from RAPD markers. Mol. Ecol. 7:1998;1293-1302
18. Cronn R.C, Cedroni M, Haselkorn T, Grover C, Wendel J.F. PCR-mediated recombination in amplification products derived from polyploid cotton. Theor. Appl. Genet. 104:2002;482-489
19. Després L, Gielly L, Redoutet B, Taberlet P. Using AFLP to resolve phylogenetic relationships in a morphologically diversified plant species complex when nuclear and chloroplast sequences fail to reveal variability. Mol. Phylogenet. Evol. 27:2003;185-196
20. Ebel A. Notes on the taxonomy and geography of Brassicaceae of Altai flora. Turczaninowia. 3:2000;18-43. (In Russian)
21. Elven R. Lid Norsk flora. sixth ed. :1994;Det Norske Samlaget, Oslo
22. Emshwiller E, Doyle J.J. Origins of domestication and polyploidy in oca (Oxalis tuberosa: Oxalidaceae). 2. Chloroplast-expressed glutamine synthetase data. Am. J. Bot. 89:2002;1042-1056
23. Farris J.S, Källersjö M, Kluge A.G, Bult C. Testing significance of incongruence. Cladistics. 10:1994;315-320
24. Gabrielsen T.M, Brochmann C. Sex after all: high levels of diversity detected in the arctic clonal plant Saxifraga cernua using RAPD markers. Mol. Ecol. 7:1998;1701-1708
25. Gabrielsen T.M, Bachmann K, Jakobsen K.S, Brochmann C. Glacial survival does not matter: RAPD phylogeography of Nordic Saxifraga oppositifolia. Mol. Ecol. 6:1997;831-842
26. Gielly L, Yuan Y.M, Küpfer P, Taberlet P. Phylogenetic use of noncoding regions in the genus Gentiana L. Chloroplast trnL (UAA) intron versus nuclear ribosomal internal transcribed spacer sequences. Mol. Phylogenet. Evol. 5:1996;460-466
27. Grundt, H.H., 2003. The arctic-alpine polyploid Draba lactea and its low-ploid relatives - evolution and taxonomy. Dr. Scient. thesis, University of Oslo, Oslo
28. Hess H.E, Landolt E, Hirzel R. Flora der Schweiz und angrenzender Gebiete. 1970;Birkhäuser Verlag, Basel
29. Hombergen E.J, Bachmann K. RAPD mapping of three QTLs determining trichome formation in Microseris hybrid H27 (Asteraceae, Lactuceae). Theor. Appl. Genet. 90:1995;853-858
30. Hughes C.E, Bailey C.D, Harris S.A. Divergent and reticulate species relationships in Leucaena (Fabaceae) inferred from multiple data sources: insights into polyploid origins and NRDNA polymorphism. Am. J. Bot. 89:2002;1057-1073
31. Ingram A.L, Doyle J.J. The origin and evolution of Eragrostis tef (Poaceae) and related polyploids: evidence from nuclear waxy and plastid rps16. Am. J. Bot. 90:2003;116-122
32. Koch M, Al-Shehbaz I.A. Molecular data indicate complex intra- and intercontinental differentiation of American Draba (Brassicaceae). Ann. Mo. Bot. Gard. 89:2002;88-109
33. Koch M.A, Dobeš C, Mitchell-Olds T. Multiple hybrid formation in natural populations: concerted evolution of the internal transcribed spacer of nuclear ribosomal DNA (ITS) in North American Arabis divaricarpa (Brassicaceae). Mol. Biol. Evol. 20:2003;338-350
34. Kochert G, Stalker H.T, Gimenes M, Galgaro L, Lopes C.R, Moore K. RFLP and cytogenetic evidence on the origin and evolution of allotetraploid domesticated peanut, Arachis hypogaea (Leguminosae). Am. J. Bot. 83:1996;1282-1291
35. Mulligan G.A. Cytotaxonomic studies of Draba nivalis and its close allies in Canada and Alaska. Can. J. Bot. 52:1974;1793-1801
36. Oxelman B. RAPD patterns, nrDNA ITS sequences and morphological patterns in Silene section Sedoideae (Caryophyllaceae). Plant Syst. Evol. 201:1996;93-116
37. Oxelman, B., Yoshikawa, N., McConaughy, B., Luo, J., Denton, A.L., Hall, B.D., (in press). Gene phylogeny of RPB2 in flowering plants, with particular emphasis on asterids. Mol. Phylogenet. Evol
38. Popp M, Oxelman B. Inferring the history of the polyploid Silene aegaea (Caryophyllaceae) using plastid and homoeologous nuclear DNA sequences. Mol. Phylogenet. Evol. 20:2001;474-481
39. Popp, M., Oxelman, B., (in press). Evolution of a RNA Polymerase Gene Family in Silene (Caryophyllaceae) - incomplete concerted evolution and topological congruence among paralogues. Syst. Biol
40. Rieseberg L.H, Ellstrand N.C. What can molecular and morphological markers tell us about plant hybridization? Crit. Rev. Plant Sci. 12:1993;213-241
41. Sang T. Utility of low-copy nuclear gene sequences in plant phylogenetics. Crit. Rev. Biochem. Mol. Biol. 37:2002;121-147
42. Scheen A.-C, Elven R, Brochmann C. A molecular-morphological approach solves taxonomic controversy in arctic Draba (Brassicaceae). Can. J. Bot. 80:2002;59-71
43. Scheen, A.-C., Brochmann, C., Brysting, A.K., Elven, R., Morris, A., Soltis, D.E., Soltis, P.S., and Albert, V.A., (in press). Northern hemisphere biogeography of Cerastium (Caryophyllaceae): insights from phylogenetic analysis of non-coding plastid nucleotide sequences. Am. J. Bot
44. Soltis P.S, Soltis D.E. Multiple origins of the allotetraploid Tragopogon mirus (Compositae): rDNA evidence. Syst. Bot. 16:1991;407-413
45. Soltis D.E, Soltis P.S. Molecular data and the dynamic nature of polyploidy. Crit. Rev. Plant Sci. 12:1993;243-273
46. Soltis P.S, Plunkett G.M, Novak S.J, Soltis D.E. Genetic variation in Tragopogon species: additional origins of the allotetraploids T. mirus and T. miscellus (Compositae). Am. J. Bot. 82:1995;1329-1341
47. Swofford D.L. PAUP*. Phylogenetic Analysis Using Parsimony (* and other methods). 2002;Sinauer, Sunderland, MA
48. Tolmachev, A.I., 1939. Draba L. In: Komarov, V.L. (Ed.), Flora S.S.S.R. Vol. 8. (English translation 1970 by Lavoott, R., Israel Program for Scientific Translations, Jerusalem, pp 276-337, 486-487)
49. Vander Stappen J, Lopez S.G, Davila P, Volckaert G. Molecular evidence for the hybrid origin of Stylosanthes Sw. (Fabaceae) from the Mexican Yucatán Peninsula. Bot. J. Linn. Soc. 140:2002;1-13
50. Welsh S.L, McClelland M. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18:1990;7213-7218
51. Wendel J.F, Doyle J.J. Phylogenetic incongruence: window into genome history and molecular evolution. Soltis D.E, Soltis P.S, Doyle J.J. Molecular Systematics of Plants II. DNA Sequencing. 1998;265-296 Kluwer Academic Publishers, Boston
52. Wendel J.F, Schnabel A, Seelanen T. Bidirectional interlocus concerted evolution following allopolyploid speciation in cotton (Gossypium). Proc. Natl. Acad. Sci. USA. 92:1995;280-284
53. Widmer A, Baltisberger M. Molecular evidence for allopolyploid speciation and a single origin of the narrow endemic Draba ladina (Brassicaceae). Am. J. Bot. 86:1999;1282-1289
54. Williams J.G.K, Kubelik A.R, Livak K.J, Rafalski J.A, Tingey S.V. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18:1990;6531-6535
55. Zhukova P.G, Petrovsky V.V. A cytotaxonomical study of some species of the family Brassicaceae in northern Asia. Bot. Zh. 69:1984;236-240. (In Russian)
56. Zimmer E.A, Martin S.L, Beverly S.M, Kann Y.W, Wilson A.C. Rapid duplications and loss of genes coding for α chains of hemoglobin. Proc. Natl. Acad. Sci. USA. 77:1980;2158-2162